Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3050 and GFF3051 are separated by 6 nucleotides GFF3051 and GFF3052 are separated by 17 nucleotides GFF3052 and GFF3053 are separated by 201 nucleotides GFF3053 and GFF3054 overlap by 4 nucleotides
GFF3050 - hypothetical protein, at 452,679 to 453,587
GFF3050
GFF3051 - hypothetical protein, at 453,594 to 454,403
GFF3051
GFF3052 - Vitamin B12 import ATP-binding protein BtuD, at 454,421 to 455,575
GFF3052
GFF3053 - Methionine aminopeptidase, at 455,777 to 456,568
GFF3053
GFF3054 - hypothetical protein, at 456,565 to 456,792
GFF3054
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1 at 453.531 kb on + strand at 453.531 kb on + strand at 453.532 kb on - strand at 453.537 kb on + strand at 453.537 kb on + strand at 453.538 kb on - strand at 453.538 kb on - strand at 453.586 kb on - strand at 453.912 kb on + strand, within GFF3051 at 453.912 kb on + strand, within GFF3051 at 453.912 kb on + strand, within GFF3051 at 453.970 kb on - strand, within GFF3051 at 454.496 kb on + strand at 454.523 kb on - strand at 454.709 kb on + strand, within GFF3052 at 455.115 kb on - strand, within GFF3052 at 455.124 kb on - strand, within GFF3052 at 455.124 kb on - strand, within GFF3052 at 455.358 kb on + strand, within GFF3052 at 455.359 kb on - strand, within GFF3052 at 455.525 kb on + strand at 455.525 kb on + strand at 455.525 kb on + strand at 455.526 kb on - strand at 455.527 kb on + strand at 455.527 kb on + strand at 455.597 kb on - strand at 455.671 kb on - strand at 455.748 kb on + strand at 455.775 kb on + strand at 455.776 kb on - strand at 455.776 kb on - strand at 455.857 kb on + strand, within GFF3053 at 455.857 kb on + strand, within GFF3053 at 455.857 kb on + strand, within GFF3053 at 455.857 kb on + strand, within GFF3053 at 455.858 kb on - strand, within GFF3053 at 455.858 kb on - strand, within GFF3053 at 455.858 kb on - strand, within GFF3053 at 456.010 kb on - strand, within GFF3053 at 456.177 kb on + strand, within GFF3053 at 456.178 kb on - strand, within GFF3053 at 456.178 kb on - strand, within GFF3053 at 456.228 kb on + strand, within GFF3053 at 456.228 kb on + strand, within GFF3053 at 456.228 kb on + strand, within GFF3053 at 456.228 kb on + strand, within GFF3053 at 456.228 kb on + strand, within GFF3053 at 456.228 kb on + strand, within GFF3053 at 456.228 kb on + strand, within GFF3053 at 456.228 kb on + strand, within GFF3053 at 456.228 kb on + strand, within GFF3053 at 456.229 kb on - strand, within GFF3053 at 456.229 kb on - strand, within GFF3053 at 456.229 kb on - strand, within GFF3053 at 456.229 kb on - strand, within GFF3053 at 456.229 kb on - strand, within GFF3053 at 456.420 kb on + strand, within GFF3053 at 456.420 kb on + strand, within GFF3053 at 456.421 kb on - strand, within GFF3053 at 456.421 kb on - strand, within GFF3053 at 456.421 kb on - strand, within GFF3053 at 456.421 kb on - strand, within GFF3053
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 453,531 + +0.1 453,531 + +0.3 453,532 - +0.5 453,537 + -0.9 453,537 + -0.3 453,538 - -0.1 453,538 - -1.2 453,586 - +0.2 453,912 + GFF3051 0.39 +0.4 453,912 + GFF3051 0.39 +0.1 453,912 + GFF3051 0.39 +0.7 453,970 - GFF3051 0.46 -0.5 454,496 + -0.8 454,523 - -0.3 454,709 + GFF3052 0.25 +0.7 455,115 - GFF3052 0.60 +1.0 455,124 - GFF3052 0.61 +0.8 455,124 - GFF3052 0.61 -0.3 455,358 + GFF3052 0.81 -0.3 455,359 - GFF3052 0.81 -0.0 455,525 + -0.3 455,525 + -0.4 455,525 + -0.8 455,526 - -1.1 455,527 + -0.6 455,527 + -0.2 455,597 - -0.6 455,671 - -1.0 455,748 + +1.2 455,775 + +0.0 455,776 - -0.3 455,776 - +1.2 455,857 + GFF3053 0.10 -2.7 455,857 + GFF3053 0.10 -0.0 455,857 + GFF3053 0.10 +0.4 455,857 + GFF3053 0.10 +1.0 455,858 - GFF3053 0.10 +0.8 455,858 - GFF3053 0.10 -0.9 455,858 - GFF3053 0.10 -1.0 456,010 - GFF3053 0.29 -0.1 456,177 + GFF3053 0.51 -0.1 456,178 - GFF3053 0.51 +0.9 456,178 - GFF3053 0.51 -0.7 456,228 + GFF3053 0.57 -2.0 456,228 + GFF3053 0.57 -1.0 456,228 + GFF3053 0.57 +0.0 456,228 + GFF3053 0.57 -0.9 456,228 + GFF3053 0.57 -0.6 456,228 + GFF3053 0.57 +0.2 456,228 + GFF3053 0.57 -0.6 456,228 + GFF3053 0.57 -0.1 456,228 + GFF3053 0.57 +0.4 456,229 - GFF3053 0.57 -1.0 456,229 - GFF3053 0.57 +0.6 456,229 - GFF3053 0.57 +0.3 456,229 - GFF3053 0.57 +0.8 456,229 - GFF3053 0.57 -0.5 456,420 + GFF3053 0.81 +0.4 456,420 + GFF3053 0.81 +0.1 456,421 - GFF3053 0.81 -1.0 456,421 - GFF3053 0.81 +1.4 456,421 - GFF3053 0.81 +0.9 456,421 - GFF3053 0.81 +0.0
Or see this region's nucleotide sequence