Strain Fitness in Pseudomonas sp. DMC3 around GFF3035

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3034 and GFF3035 are separated by 156 nucleotidesGFF3035 and GFF3036 are separated by 192 nucleotides GFF3034 - hypothetical protein, at 434,926 to 435,918 GFF3034 GFF3035 - Quinolone resistance transporter, at 436,075 to 437,397 GFF3035 GFF3036 - L-arabonate dehydratase, at 437,590 to 439,326 GFF3036 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1 2at 435.120 kb on - strand, within GFF3034at 435.120 kb on - strand, within GFF3034at 435.134 kb on + strand, within GFF3034at 435.135 kb on - strand, within GFF3034at 435.275 kb on + strand, within GFF3034at 435.308 kb on + strand, within GFF3034at 435.308 kb on + strand, within GFF3034at 435.314 kb on + strand, within GFF3034at 435.314 kb on + strand, within GFF3034at 435.314 kb on + strand, within GFF3034at 435.314 kb on + strand, within GFF3034at 435.314 kb on + strand, within GFF3034at 435.315 kb on - strand, within GFF3034at 435.401 kb on + strand, within GFF3034at 435.401 kb on + strand, within GFF3034at 435.401 kb on + strand, within GFF3034at 435.402 kb on - strand, within GFF3034at 435.501 kb on - strand, within GFF3034at 435.501 kb on - strand, within GFF3034at 435.737 kb on + strand, within GFF3034at 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.918 kb on + strandat 435.919 kb on - strandat 435.919 kb on - strandat 435.919 kb on - strandat 435.919 kb on - strandat 435.919 kb on - strandat 435.919 kb on - strandat 435.919 kb on - strandat 435.919 kb on - strandat 435.919 kb on - strandat 435.919 kb on - strandat 435.964 kb on + strandat 435.965 kb on - strandat 435.986 kb on - strandat 436.058 kb on + strandat 436.058 kb on + strandat 436.059 kb on - strandat 436.069 kb on + strandat 436.069 kb on + strandat 436.069 kb on + strandat 436.069 kb on + strandat 436.069 kb on + strandat 436.070 kb on - strandat 436.070 kb on - strandat 436.070 kb on - strandat 436.070 kb on - strandat 436.070 kb on - strandat 436.070 kb on - strandat 436.203 kb on - strandat 436.229 kb on + strand, within GFF3035at 436.230 kb on - strand, within GFF3035at 436.230 kb on - strand, within GFF3035at 436.265 kb on + strand, within GFF3035at 436.266 kb on - strand, within GFF3035at 436.463 kb on + strand, within GFF3035at 436.463 kb on + strand, within GFF3035at 436.464 kb on - strand, within GFF3035at 436.464 kb on - strand, within GFF3035at 436.464 kb on - strand, within GFF3035at 436.547 kb on + strand, within GFF3035at 436.548 kb on - strand, within GFF3035at 436.631 kb on + strand, within GFF3035at 436.631 kb on + strand, within GFF3035at 436.632 kb on - strand, within GFF3035at 436.632 kb on - strand, within GFF3035at 436.632 kb on - strand, within GFF3035at 436.632 kb on - strand, within GFF3035at 436.632 kb on - strand, within GFF3035at 436.655 kb on + strand, within GFF3035at 436.655 kb on + strand, within GFF3035at 437.021 kb on + strand, within GFF3035at 437.021 kb on + strand, within GFF3035at 437.021 kb on + strand, within GFF3035at 437.021 kb on + strand, within GFF3035at 437.021 kb on + strand, within GFF3035at 437.021 kb on + strand, within GFF3035at 437.021 kb on + strand, within GFF3035at 437.021 kb on + strand, within GFF3035at 437.021 kb on + strand, within GFF3035at 437.022 kb on - strand, within GFF3035at 437.022 kb on - strand, within GFF3035at 437.022 kb on - strand, within GFF3035at 437.022 kb on - strand, within GFF3035at 437.022 kb on - strand, within GFF3035at 437.024 kb on + strand, within GFF3035at 437.025 kb on - strand, within GFF3035at 437.081 kb on + strand, within GFF3035at 437.081 kb on + strand, within GFF3035at 437.081 kb on + strand, within GFF3035at 437.081 kb on + strand, within GFF3035at 437.081 kb on + strand, within GFF3035at 437.081 kb on + strand, within GFF3035at 437.081 kb on + strand, within GFF3035at 437.082 kb on - strand, within GFF3035at 437.246 kb on + strand, within GFF3035at 437.247 kb on - strand, within GFF3035at 437.318 kb on + strandat 437.319 kb on - strandat 437.319 kb on - strandat 437.330 kb on + strandat 437.331 kb on - strandat 437.423 kb on + strandat 437.425 kb on + strandat 437.426 kb on - strandat 437.659 kb on + strandat 437.659 kb on + strandat 437.660 kb on - strandat 438.280 kb on + strand, within GFF3036at 438.280 kb on + strand, within GFF3036at 438.281 kb on - strand, within GFF3036at 438.281 kb on - strand, within GFF3036at 438.281 kb on - strand, within GFF3036at 438.281 kb on - strand, within GFF3036at 438.378 kb on + strand, within GFF3036

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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435,120 - GFF3034 0.20 +0.9
435,120 - GFF3034 0.20 +0.2
435,134 + GFF3034 0.21 +0.0
435,135 - GFF3034 0.21 -0.9
435,275 + GFF3034 0.35 +0.1
435,308 + GFF3034 0.38 +0.4
435,308 + GFF3034 0.38 +0.5
435,314 + GFF3034 0.39 -0.6
435,314 + GFF3034 0.39 -0.2
435,314 + GFF3034 0.39 -1.3
435,314 + GFF3034 0.39 +0.1
435,314 + GFF3034 0.39 -0.6
435,315 - GFF3034 0.39 +0.4
435,401 + GFF3034 0.48 +0.1
435,401 + GFF3034 0.48 -1.2
435,401 + GFF3034 0.48 +0.4
435,402 - GFF3034 0.48 -0.1
435,501 - GFF3034 0.58 +1.2
435,501 - GFF3034 0.58 -0.1
435,737 + GFF3034 0.82 -1.0
435,918 + -1.2
435,918 + +0.2
435,918 + +0.3
435,918 + -0.5
435,918 + +0.5
435,918 + -1.5
435,918 + -0.6
435,918 + +0.5
435,918 + -0.2
435,918 + +0.5
435,918 + -1.2
435,918 + -0.4
435,918 + -0.9
435,918 + -1.1
435,918 + -0.6
435,919 - +0.5
435,919 - -0.6
435,919 - -1.6
435,919 - -2.0
435,919 - -0.3
435,919 - -1.7
435,919 - -0.2
435,919 - -2.4
435,919 - +1.4
435,919 - -1.3
435,964 + +0.4
435,965 - +1.3
435,986 - -0.6
436,058 + +0.2
436,058 + +0.6
436,059 - -0.4
436,069 + +0.1
436,069 + -0.6
436,069 + +0.5
436,069 + -0.4
436,069 + -0.6
436,070 - +0.1
436,070 - +1.4
436,070 - +0.1
436,070 - -0.2
436,070 - +0.3
436,070 - +1.4
436,203 - -0.3
436,229 + GFF3035 0.12 +2.0
436,230 - GFF3035 0.12 +0.3
436,230 - GFF3035 0.12 -0.4
436,265 + GFF3035 0.14 -0.8
436,266 - GFF3035 0.14 -2.3
436,463 + GFF3035 0.29 +0.2
436,463 + GFF3035 0.29 +0.2
436,464 - GFF3035 0.29 +0.1
436,464 - GFF3035 0.29 +2.1
436,464 - GFF3035 0.29 +0.8
436,547 + GFF3035 0.36 +0.2
436,548 - GFF3035 0.36 -0.8
436,631 + GFF3035 0.42 +0.3
436,631 + GFF3035 0.42 -0.3
436,632 - GFF3035 0.42 -0.2
436,632 - GFF3035 0.42 -1.0
436,632 - GFF3035 0.42 -2.2
436,632 - GFF3035 0.42 +0.9
436,632 - GFF3035 0.42 -1.1
436,655 + GFF3035 0.44 +1.3
436,655 + GFF3035 0.44 +1.3
437,021 + GFF3035 0.72 +0.3
437,021 + GFF3035 0.72 -0.1
437,021 + GFF3035 0.72 +0.0
437,021 + GFF3035 0.72 +0.3
437,021 + GFF3035 0.72 +0.7
437,021 + GFF3035 0.72 +0.7
437,021 + GFF3035 0.72 -0.9
437,021 + GFF3035 0.72 +0.3
437,021 + GFF3035 0.72 +0.4
437,022 - GFF3035 0.72 -0.2
437,022 - GFF3035 0.72 +0.7
437,022 - GFF3035 0.72 +1.2
437,022 - GFF3035 0.72 +1.4
437,022 - GFF3035 0.72 +0.9
437,024 + GFF3035 0.72 +0.6
437,025 - GFF3035 0.72 +0.7
437,081 + GFF3035 0.76 +0.3
437,081 + GFF3035 0.76 -0.5
437,081 + GFF3035 0.76 -1.7
437,081 + GFF3035 0.76 +1.2
437,081 + GFF3035 0.76 -0.5
437,081 + GFF3035 0.76 +1.3
437,081 + GFF3035 0.76 -0.5
437,082 - GFF3035 0.76 +1.5
437,246 + GFF3035 0.89 +0.6
437,247 - GFF3035 0.89 -0.3
437,318 + -1.0
437,319 - -0.1
437,319 - -0.2
437,330 + +0.1
437,331 - +0.5
437,423 + +0.4
437,425 + +0.4
437,426 - -2.2
437,659 + +0.4
437,659 + -0.4
437,660 - -0.7
438,280 + GFF3036 0.40 +0.4
438,280 + GFF3036 0.40 +1.6
438,281 - GFF3036 0.40 +0.5
438,281 - GFF3036 0.40 -0.1
438,281 - GFF3036 0.40 +1.3
438,281 - GFF3036 0.40 -1.9
438,378 + GFF3036 0.45 +0.0

Or see this region's nucleotide sequence