Strain Fitness in Pseudomonas sp. DMC3 around GFF279

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF277 and GFF278 are separated by 2 nucleotidesGFF278 and GFF279 are separated by 108 nucleotidesGFF279 and GFF280 are separated by 100 nucleotides GFF277 - hypothetical protein, at 309,126 to 309,611 GFF277 GFF278 - hypothetical protein, at 309,614 to 310,246 GFF278 GFF279 - hypothetical protein, at 310,355 to 311,086 GFF279 GFF280 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase, at 311,187 to 312,134 GFF280 Position (kb) 310 311 312Strain fitness (log2 ratio) -2 -1 0 1 2at 309.390 kb on - strand, within GFF277at 309.562 kb on + strand, within GFF277at 309.563 kb on - strandat 309.563 kb on - strandat 309.741 kb on - strand, within GFF278at 309.768 kb on + strand, within GFF278at 309.768 kb on + strand, within GFF278at 309.768 kb on + strand, within GFF278at 309.768 kb on + strand, within GFF278at 309.769 kb on - strand, within GFF278at 309.769 kb on - strand, within GFF278at 309.769 kb on - strand, within GFF278at 309.817 kb on - strand, within GFF278at 309.817 kb on - strand, within GFF278at 309.876 kb on + strand, within GFF278at 309.903 kb on - strand, within GFF278at 309.960 kb on - strand, within GFF278at 310.111 kb on + strand, within GFF278at 310.205 kb on + strandat 310.205 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.249 kb on + strandat 310.250 kb on - strandat 310.250 kb on - strandat 310.250 kb on - strandat 310.310 kb on + strandat 310.310 kb on + strandat 310.311 kb on - strandat 310.311 kb on - strandat 310.311 kb on - strandat 310.311 kb on - strandat 310.330 kb on + strandat 310.330 kb on + strandat 310.330 kb on + strandat 310.331 kb on - strandat 310.392 kb on + strandat 310.427 kb on + strandat 310.428 kb on - strandat 310.428 kb on - strandat 310.428 kb on - strandat 310.428 kb on - strandat 310.428 kb on - strandat 310.497 kb on - strand, within GFF279at 310.619 kb on - strand, within GFF279at 310.958 kb on + strand, within GFF279at 310.958 kb on + strand, within GFF279at 310.965 kb on - strand, within GFF279at 311.033 kb on + strandat 311.033 kb on + strandat 311.033 kb on + strandat 311.034 kb on - strandat 311.034 kb on - strandat 311.034 kb on - strandat 311.036 kb on + strandat 311.037 kb on - strandat 311.037 kb on - strandat 311.101 kb on - strandat 311.188 kb on + strandat 311.230 kb on + strandat 311.230 kb on + strandat 311.230 kb on + strandat 311.230 kb on + strandat 311.545 kb on - strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.566 kb on + strand, within GFF280at 311.566 kb on + strand, within GFF280at 311.566 kb on + strand, within GFF280at 311.567 kb on - strand, within GFF280at 311.567 kb on - strand, within GFF280at 311.567 kb on - strand, within GFF280at 311.770 kb on + strand, within GFF280at 311.884 kb on + strand, within GFF280at 311.902 kb on + strand, within GFF280at 311.903 kb on - strand, within GFF280at 311.905 kb on + strand, within GFF280at 311.906 kb on - strand, within GFF280at 311.971 kb on + strand, within GFF280at 312.034 kb on + strand, within GFF280at 312.035 kb on - strand, within GFF280at 312.035 kb on - strand, within GFF280at 312.035 kb on - strand, within GFF280at 312.046 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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309,390 - GFF277 0.54 +0.5
309,562 + GFF277 0.90 -0.4
309,563 - -0.2
309,563 - -0.2
309,741 - GFF278 0.20 +0.1
309,768 + GFF278 0.24 -0.3
309,768 + GFF278 0.24 -0.7
309,768 + GFF278 0.24 +0.3
309,768 + GFF278 0.24 +0.2
309,769 - GFF278 0.24 -0.2
309,769 - GFF278 0.24 -0.5
309,769 - GFF278 0.24 +1.1
309,817 - GFF278 0.32 -0.2
309,817 - GFF278 0.32 -1.3
309,876 + GFF278 0.41 -1.4
309,903 - GFF278 0.46 -1.0
309,960 - GFF278 0.55 +0.0
310,111 + GFF278 0.79 -0.7
310,205 + -0.8
310,205 + +0.7
310,246 + -0.6
310,246 + -0.2
310,246 + +0.0
310,246 + -0.2
310,246 + -0.6
310,246 + -0.4
310,246 + +0.4
310,246 + +0.4
310,247 - +0.1
310,247 - +0.6
310,249 + -0.1
310,250 - +0.2
310,250 - +0.9
310,250 - -0.5
310,310 + -0.0
310,310 + -0.1
310,311 - +0.9
310,311 - -1.4
310,311 - -1.0
310,311 - -0.6
310,330 + -1.0
310,330 + -0.0
310,330 + -0.5
310,331 - +0.4
310,392 + -0.2
310,427 + -0.3
310,428 - -0.4
310,428 - -0.6
310,428 - -1.3
310,428 - -0.0
310,428 - +0.7
310,497 - GFF279 0.19 +0.7
310,619 - GFF279 0.36 +0.3
310,958 + GFF279 0.82 +1.1
310,958 + GFF279 0.82 +0.2
310,965 - GFF279 0.83 -1.0
311,033 + -1.3
311,033 + +1.0
311,033 + -0.5
311,034 - +0.5
311,034 - +0.3
311,034 - +0.5
311,036 + -0.8
311,037 - -0.9
311,037 - -1.0
311,101 - +0.8
311,188 + -0.7
311,230 + -0.8
311,230 + +0.0
311,230 + +0.6
311,230 + -1.1
311,545 - GFF280 0.38 -0.3
311,563 + GFF280 0.40 +2.2
311,563 + GFF280 0.40 +0.0
311,563 + GFF280 0.40 -0.1
311,563 + GFF280 0.40 -0.1
311,563 + GFF280 0.40 -1.3
311,563 + GFF280 0.40 +0.5
311,563 + GFF280 0.40 -0.6
311,566 + GFF280 0.40 -1.0
311,566 + GFF280 0.40 +0.6
311,566 + GFF280 0.40 -0.3
311,567 - GFF280 0.40 -1.0
311,567 - GFF280 0.40 -1.9
311,567 - GFF280 0.40 -0.1
311,770 + GFF280 0.61 +1.6
311,884 + GFF280 0.74 +0.5
311,902 + GFF280 0.75 +0.2
311,903 - GFF280 0.76 +0.6
311,905 + GFF280 0.76 +0.0
311,906 - GFF280 0.76 +0.1
311,971 + GFF280 0.83 -1.2
312,034 + GFF280 0.89 +0.2
312,035 - GFF280 0.89 -0.2
312,035 - GFF280 0.89 -0.5
312,035 - GFF280 0.89 -1.5
312,046 + -0.8

Or see this region's nucleotide sequence