Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF273 and GFF274 are separated by 181 nucleotides GFF274 and GFF275 are separated by 123 nucleotides GFF275 and GFF276 are separated by 135 nucleotides
GFF273 - putative FAD-linked oxidoreductase, at 304,824 to 306,242
GFF273
GFF274 - D-3-phosphoglycerate dehydrogenase, at 306,424 to 307,653
GFF274
GFF275 - hypothetical protein, at 307,777 to 308,202
GFF275
GFF276 - Membrane-bound lytic murein transglycosylase F, at 308,338 to 308,901
GFF276
Position (kb) 306
307
308 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 305.650 kb on + strand, within GFF273 at 305.836 kb on + strand, within GFF273 at 305.941 kb on + strand, within GFF273 at 305.942 kb on - strand, within GFF273 at 305.942 kb on - strand, within GFF273 at 305.942 kb on - strand, within GFF273 at 306.133 kb on + strand at 306.133 kb on + strand at 306.134 kb on - strand at 306.134 kb on - strand at 306.295 kb on + strand at 306.296 kb on - strand at 306.300 kb on + strand at 306.300 kb on + strand at 306.301 kb on - strand at 306.301 kb on - strand at 306.301 kb on - strand at 306.301 kb on - strand at 306.301 kb on - strand at 306.301 kb on - strand at 306.301 kb on - strand at 306.305 kb on + strand at 306.306 kb on - strand at 306.306 kb on - strand at 306.409 kb on + strand at 306.417 kb on + strand at 306.461 kb on + strand at 306.518 kb on - strand at 306.532 kb on + strand at 306.740 kb on - strand, within GFF274 at 306.740 kb on - strand, within GFF274 at 306.961 kb on + strand, within GFF274 at 306.961 kb on + strand, within GFF274 at 306.961 kb on + strand, within GFF274 at 306.962 kb on - strand, within GFF274 at 306.962 kb on - strand, within GFF274 at 306.962 kb on - strand, within GFF274 at 306.962 kb on - strand, within GFF274 at 306.962 kb on - strand, within GFF274 at 306.962 kb on - strand, within GFF274 at 306.997 kb on - strand, within GFF274 at 307.380 kb on + strand, within GFF274 at 307.381 kb on - strand, within GFF274 at 307.585 kb on + strand at 307.585 kb on + strand at 307.677 kb on + strand at 307.677 kb on + strand at 307.677 kb on + strand at 307.677 kb on + strand at 307.677 kb on + strand at 307.678 kb on - strand at 307.678 kb on - strand at 307.708 kb on + strand at 308.284 kb on + strand at 308.284 kb on + strand at 308.284 kb on + strand at 308.285 kb on - strand at 308.370 kb on - strand at 308.439 kb on - strand, within GFF276 at 308.455 kb on - strand, within GFF276 at 308.455 kb on - strand, within GFF276 at 308.455 kb on - strand, within GFF276 at 308.470 kb on + strand, within GFF276 at 308.471 kb on - strand, within GFF276 at 308.471 kb on - strand, within GFF276 at 308.471 kb on - strand, within GFF276 at 308.540 kb on + strand, within GFF276 at 308.541 kb on - strand, within GFF276 at 308.602 kb on + strand, within GFF276 at 308.602 kb on + strand, within GFF276 at 308.603 kb on - strand, within GFF276 at 308.603 kb on - strand, within GFF276 at 308.624 kb on + strand, within GFF276 at 308.624 kb on + strand, within GFF276 at 308.625 kb on - strand, within GFF276 at 308.625 kb on - strand, within GFF276 at 308.625 kb on - strand, within GFF276 at 308.625 kb on - strand, within GFF276 at 308.625 kb on - strand, within GFF276 at 308.625 kb on - strand, within GFF276
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 305,650 + GFF273 0.58 -1.0 305,836 + GFF273 0.71 -0.6 305,941 + GFF273 0.79 +0.0 305,942 - GFF273 0.79 -0.0 305,942 - GFF273 0.79 +1.1 305,942 - GFF273 0.79 -1.0 306,133 + +0.2 306,133 + -1.1 306,134 - -1.4 306,134 - -0.4 306,295 + -0.5 306,296 - +1.1 306,300 + -1.7 306,300 + -0.7 306,301 - -3.0 306,301 - -2.8 306,301 - -1.7 306,301 - -1.7 306,301 - -1.5 306,301 - -1.8 306,301 - +1.2 306,305 + -0.1 306,306 - -1.4 306,306 - -2.5 306,409 + -0.5 306,417 + -1.4 306,461 + -1.3 306,518 - -2.1 306,532 + -3.6 306,740 - GFF274 0.26 -3.4 306,740 - GFF274 0.26 -0.4 306,961 + GFF274 0.44 -1.3 306,961 + GFF274 0.44 -1.0 306,961 + GFF274 0.44 -3.9 306,962 - GFF274 0.44 -1.0 306,962 - GFF274 0.44 -3.6 306,962 - GFF274 0.44 -0.7 306,962 - GFF274 0.44 -3.5 306,962 - GFF274 0.44 -2.4 306,962 - GFF274 0.44 -2.7 306,997 - GFF274 0.47 -1.8 307,380 + GFF274 0.78 +0.9 307,381 - GFF274 0.78 -4.2 307,585 + -2.7 307,585 + -1.0 307,677 + -0.5 307,677 + +0.4 307,677 + -0.1 307,677 + -0.7 307,677 + +0.7 307,678 - -1.0 307,678 - -0.1 307,708 + +0.8 308,284 + +0.2 308,284 + -0.9 308,284 + +0.1 308,285 - +0.2 308,370 - +0.5 308,439 - GFF276 0.18 -0.6 308,455 - GFF276 0.21 +0.6 308,455 - GFF276 0.21 -0.7 308,455 - GFF276 0.21 +1.2 308,470 + GFF276 0.23 -0.3 308,471 - GFF276 0.24 +0.1 308,471 - GFF276 0.24 -0.4 308,471 - GFF276 0.24 -1.2 308,540 + GFF276 0.36 +0.2 308,541 - GFF276 0.36 +1.6 308,602 + GFF276 0.47 -0.1 308,602 + GFF276 0.47 -0.6 308,603 - GFF276 0.47 +0.2 308,603 - GFF276 0.47 +0.4 308,624 + GFF276 0.51 +0.2 308,624 + GFF276 0.51 +0.4 308,625 - GFF276 0.51 +0.9 308,625 - GFF276 0.51 +0.6 308,625 - GFF276 0.51 -1.1 308,625 - GFF276 0.51 -0.6 308,625 - GFF276 0.51 +0.3 308,625 - GFF276 0.51 -0.5
Or see this region's nucleotide sequence