Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2207 and GFF2208 are separated by 11 nucleotides GFF2208 and GFF2209 are separated by 10 nucleotides GFF2209 and GFF2210 are separated by 175 nucleotides
GFF2207 - 3-carboxy-cis,cis-muconate cycloisomerase, at 458,289 to 459,653
GFF2207
GFF2208 - 3-oxoadipate enol-lactonase 2, at 459,665 to 460,456
GFF2208
GFF2209 - hypothetical protein, at 460,467 to 460,859
GFF2209
GFF2210 - Porin-like protein NicP, at 461,035 to 462,294
GFF2210
Position (kb) 460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.588 kb on + strand at 459.701 kb on + strand at 459.702 kb on - strand at 459.866 kb on + strand, within GFF2208 at 459.867 kb on - strand, within GFF2208 at 460.214 kb on + strand, within GFF2208 at 460.367 kb on + strand, within GFF2208 at 460.367 kb on + strand, within GFF2208 at 460.485 kb on + strand at 460.486 kb on - strand at 460.486 kb on - strand at 460.776 kb on + strand, within GFF2209 at 460.837 kb on + strand at 460.837 kb on + strand at 460.838 kb on - strand at 460.838 kb on - strand at 460.838 kb on - strand at 460.838 kb on - strand at 460.874 kb on - strand at 460.965 kb on - strand at 461.289 kb on - strand, within GFF2210 at 461.289 kb on - strand, within GFF2210 at 461.331 kb on - strand, within GFF2210 at 461.331 kb on - strand, within GFF2210 at 461.343 kb on - strand, within GFF2210 at 461.427 kb on - strand, within GFF2210 at 461.444 kb on + strand, within GFF2210 at 461.444 kb on + strand, within GFF2210 at 461.445 kb on - strand, within GFF2210 at 461.445 kb on - strand, within GFF2210 at 461.445 kb on - strand, within GFF2210 at 461.585 kb on + strand, within GFF2210 at 461.585 kb on + strand, within GFF2210 at 461.586 kb on - strand, within GFF2210 at 461.597 kb on + strand, within GFF2210 at 461.597 kb on + strand, within GFF2210 at 461.598 kb on - strand, within GFF2210 at 461.598 kb on - strand, within GFF2210 at 461.771 kb on + strand, within GFF2210 at 461.771 kb on + strand, within GFF2210 at 461.771 kb on + strand, within GFF2210 at 461.772 kb on - strand, within GFF2210 at 461.772 kb on - strand, within GFF2210 at 461.772 kb on - strand, within GFF2210
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 459,588 + +0.6 459,701 + -0.1 459,702 - -0.0 459,866 + GFF2208 0.25 -0.4 459,867 - GFF2208 0.26 -0.2 460,214 + GFF2208 0.69 +0.7 460,367 + GFF2208 0.89 -0.7 460,367 + GFF2208 0.89 +0.2 460,485 + -0.8 460,486 - -0.1 460,486 - +0.6 460,776 + GFF2209 0.79 -1.0 460,837 + -2.1 460,837 + -0.3 460,838 - +1.6 460,838 - -0.7 460,838 - -1.2 460,838 - +0.2 460,874 - -0.5 460,965 - +0.5 461,289 - GFF2210 0.20 -1.1 461,289 - GFF2210 0.20 +1.5 461,331 - GFF2210 0.23 -1.4 461,331 - GFF2210 0.23 +1.3 461,343 - GFF2210 0.24 +0.2 461,427 - GFF2210 0.31 -0.1 461,444 + GFF2210 0.32 -0.7 461,444 + GFF2210 0.32 +0.1 461,445 - GFF2210 0.33 +0.1 461,445 - GFF2210 0.33 +0.5 461,445 - GFF2210 0.33 -0.2 461,585 + GFF2210 0.44 -0.8 461,585 + GFF2210 0.44 -0.1 461,586 - GFF2210 0.44 +0.4 461,597 + GFF2210 0.45 -0.2 461,597 + GFF2210 0.45 -0.3 461,598 - GFF2210 0.45 -1.2 461,598 - GFF2210 0.45 -0.5 461,771 + GFF2210 0.58 +0.4 461,771 + GFF2210 0.58 -0.7 461,771 + GFF2210 0.58 +0.2 461,772 - GFF2210 0.58 -0.7 461,772 - GFF2210 0.58 -0.3 461,772 - GFF2210 0.58 +1.8
Or see this region's nucleotide sequence