Strain Fitness in Pseudomonas sp. DMC3 around GFF2191

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2190 and GFF2191 are separated by 150 nucleotidesGFF2191 and GFF2192 are separated by 301 nucleotides GFF2190 - putative signaling protein, at 437,809 to 440,091 GFF2190 GFF2191 - hypothetical protein, at 440,242 to 440,610 GFF2191 GFF2192 - Hexuronate transporter, at 440,912 to 442,261 GFF2192 Position (kb) 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1at 439.508 kb on + strand, within GFF2190at 439.508 kb on + strand, within GFF2190at 439.508 kb on + strand, within GFF2190at 439.509 kb on - strand, within GFF2190at 439.509 kb on - strand, within GFF2190at 439.625 kb on + strand, within GFF2190at 439.625 kb on + strand, within GFF2190at 439.625 kb on + strand, within GFF2190at 439.626 kb on - strand, within GFF2190at 439.626 kb on - strand, within GFF2190at 439.628 kb on + strand, within GFF2190at 439.628 kb on + strand, within GFF2190at 439.629 kb on - strand, within GFF2190at 439.629 kb on - strand, within GFF2190at 439.667 kb on + strand, within GFF2190at 439.667 kb on + strand, within GFF2190at 439.667 kb on + strand, within GFF2190at 439.668 kb on - strand, within GFF2190at 439.668 kb on - strand, within GFF2190at 439.668 kb on - strand, within GFF2190at 439.668 kb on - strand, within GFF2190at 439.683 kb on + strand, within GFF2190at 439.688 kb on - strand, within GFF2190at 439.749 kb on + strand, within GFF2190at 439.749 kb on + strand, within GFF2190at 439.749 kb on + strand, within GFF2190at 439.994 kb on + strandat 439.994 kb on + strandat 440.091 kb on + strandat 440.091 kb on + strandat 440.091 kb on + strandat 440.092 kb on - strandat 440.092 kb on - strandat 440.154 kb on + strandat 440.154 kb on + strandat 440.154 kb on + strandat 440.155 kb on - strandat 440.156 kb on + strandat 440.156 kb on + strandat 440.156 kb on + strandat 440.156 kb on + strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.157 kb on - strandat 440.184 kb on - strandat 440.223 kb on + strandat 440.224 kb on - strandat 440.224 kb on - strandat 440.236 kb on + strandat 440.390 kb on + strand, within GFF2191at 440.390 kb on + strand, within GFF2191at 440.391 kb on - strand, within GFF2191at 440.391 kb on - strand, within GFF2191at 440.667 kb on + strandat 440.667 kb on + strandat 440.668 kb on - strandat 440.668 kb on - strandat 440.774 kb on + strandat 440.774 kb on + strandat 440.846 kb on + strandat 440.846 kb on + strandat 440.847 kb on - strandat 440.891 kb on + strandat 440.891 kb on + strandat 440.891 kb on + strandat 440.892 kb on - strandat 440.892 kb on - strandat 440.897 kb on + strandat 440.898 kb on - strandat 440.898 kb on - strandat 440.898 kb on - strandat 440.898 kb on - strandat 441.090 kb on - strand, within GFF2192at 441.260 kb on + strand, within GFF2192at 441.260 kb on + strand, within GFF2192at 441.260 kb on + strand, within GFF2192at 441.260 kb on + strand, within GFF2192at 441.261 kb on - strand, within GFF2192at 441.261 kb on - strand, within GFF2192at 441.261 kb on - strand, within GFF2192at 441.261 kb on - strand, within GFF2192at 441.261 kb on - strand, within GFF2192at 441.261 kb on - strand, within GFF2192at 441.608 kb on + strand, within GFF2192at 441.608 kb on + strand, within GFF2192at 441.609 kb on - strand, within GFF2192at 441.609 kb on - strand, within GFF2192at 441.609 kb on - strand, within GFF2192

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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439,508 + GFF2190 0.74 +0.5
439,508 + GFF2190 0.74 +0.2
439,508 + GFF2190 0.74 -0.3
439,509 - GFF2190 0.74 -0.7
439,509 - GFF2190 0.74 -0.5
439,625 + GFF2190 0.80 +0.3
439,625 + GFF2190 0.80 -0.9
439,625 + GFF2190 0.80 -1.1
439,626 - GFF2190 0.80 +1.2
439,626 - GFF2190 0.80 +0.8
439,628 + GFF2190 0.80 +0.5
439,628 + GFF2190 0.80 -1.9
439,629 - GFF2190 0.80 -0.4
439,629 - GFF2190 0.80 +0.7
439,667 + GFF2190 0.81 +0.6
439,667 + GFF2190 0.81 -0.8
439,667 + GFF2190 0.81 +0.8
439,668 - GFF2190 0.81 -0.0
439,668 - GFF2190 0.81 -0.6
439,668 - GFF2190 0.81 -1.7
439,668 - GFF2190 0.81 -0.7
439,683 + GFF2190 0.82 +0.9
439,688 - GFF2190 0.82 -0.7
439,749 + GFF2190 0.85 -1.9
439,749 + GFF2190 0.85 -0.8
439,749 + GFF2190 0.85 +0.4
439,994 + +0.2
439,994 + +1.0
440,091 + +0.9
440,091 + +0.7
440,091 + +0.2
440,092 - -0.2
440,092 - +0.0
440,154 + -1.1
440,154 + -0.9
440,154 + -0.3
440,155 - +0.6
440,156 + -0.4
440,156 + -0.0
440,156 + -0.4
440,156 + +0.4
440,157 - -0.3
440,157 - +0.3
440,157 - -0.5
440,157 - -1.0
440,157 - +0.4
440,157 - -0.3
440,157 - -1.5
440,157 - -0.6
440,157 - -0.3
440,157 - -0.5
440,157 - -0.4
440,184 - -0.0
440,223 + +0.8
440,224 - -1.9
440,224 - -0.2
440,236 + -0.7
440,390 + GFF2191 0.40 -0.5
440,390 + GFF2191 0.40 -1.1
440,391 - GFF2191 0.40 -2.2
440,391 - GFF2191 0.40 -0.7
440,667 + -0.5
440,667 + +0.4
440,668 - -0.6
440,668 - -0.0
440,774 + +0.3
440,774 + -0.7
440,846 + -0.7
440,846 + +0.2
440,847 - +0.1
440,891 + +1.3
440,891 + +0.6
440,891 + -0.3
440,892 - -0.6
440,892 - -0.3
440,897 + -0.7
440,898 - +0.4
440,898 - -0.0
440,898 - +0.1
440,898 - +0.9
441,090 - GFF2192 0.13 -1.0
441,260 + GFF2192 0.26 +0.7
441,260 + GFF2192 0.26 -0.2
441,260 + GFF2192 0.26 +0.6
441,260 + GFF2192 0.26 +0.7
441,261 - GFF2192 0.26 -1.0
441,261 - GFF2192 0.26 -0.8
441,261 - GFF2192 0.26 -2.1
441,261 - GFF2192 0.26 -0.9
441,261 - GFF2192 0.26 +1.0
441,261 - GFF2192 0.26 -2.1
441,608 + GFF2192 0.52 -0.6
441,608 + GFF2192 0.52 -2.9
441,609 - GFF2192 0.52 -0.4
441,609 - GFF2192 0.52 +0.4
441,609 - GFF2192 0.52 -0.0

Or see this region's nucleotide sequence