Strain Fitness in Pseudomonas sp. DMC3 around GFF219

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF217 and GFF218 are separated by 132 nucleotidesGFF218 and GFF219 are separated by 9 nucleotidesGFF219 and GFF220 are separated by 61 nucleotidesGFF220 and GFF221 are separated by 23 nucleotidesGFF221 and GFF222 are separated by 74 nucleotides GFF217 - hypothetical protein, at 245,731 to 246,054 GFF217 GFF218 - tRNA (guanine-N(7)-)-methyltransferase, at 246,187 to 246,912 GFF218 GFF219 - Thiazole synthase, at 246,922 to 247,716 GFF219 GFF220 - hypothetical protein, at 247,778 to 248,026 GFF220 GFF221 - hypothetical protein, at 248,050 to 248,430 GFF221 GFF222 - Biosynthetic peptidoglycan transglycosylase, at 248,505 to 249,227 GFF222 Position (kb) 246 247 248Strain fitness (log2 ratio) -2 -1 0 1at 245.944 kb on + strand, within GFF217at 245.944 kb on + strand, within GFF217at 245.944 kb on + strand, within GFF217at 245.944 kb on + strand, within GFF217at 245.944 kb on + strand, within GFF217at 245.944 kb on + strand, within GFF217at 245.989 kb on + strand, within GFF217at 245.989 kb on + strand, within GFF217at 245.990 kb on - strand, within GFF217at 245.990 kb on - strand, within GFF217at 245.990 kb on - strand, within GFF217at 245.990 kb on - strand, within GFF217at 246.017 kb on + strand, within GFF217at 246.347 kb on + strand, within GFF218at 246.348 kb on - strand, within GFF218at 246.348 kb on - strand, within GFF218at 246.536 kb on + strand, within GFF218at 246.554 kb on + strand, within GFF218at 246.773 kb on + strand, within GFF218at 246.773 kb on + strand, within GFF218at 246.773 kb on + strand, within GFF218at 246.774 kb on - strand, within GFF218at 246.774 kb on - strand, within GFF218at 246.774 kb on - strand, within GFF218at 246.923 kb on + strandat 246.923 kb on + strandat 246.923 kb on + strandat 246.924 kb on - strandat 246.924 kb on - strandat 246.924 kb on - strandat 246.924 kb on - strandat 246.924 kb on - strandat 246.962 kb on + strandat 247.082 kb on - strand, within GFF219at 247.190 kb on + strand, within GFF219at 247.190 kb on + strand, within GFF219at 247.191 kb on - strand, within GFF219at 247.203 kb on + strand, within GFF219at 247.298 kb on + strand, within GFF219at 247.299 kb on - strand, within GFF219at 247.470 kb on - strand, within GFF219at 247.470 kb on - strand, within GFF219at 247.499 kb on + strand, within GFF219at 247.499 kb on + strand, within GFF219at 247.499 kb on + strand, within GFF219at 247.500 kb on - strand, within GFF219at 247.635 kb on - strand, within GFF219at 247.635 kb on - strand, within GFF219at 247.667 kb on + strandat 247.667 kb on + strandat 247.667 kb on + strandat 247.668 kb on - strandat 247.671 kb on + strandat 247.671 kb on + strandat 247.671 kb on + strandat 247.672 kb on - strandat 247.672 kb on - strandat 247.672 kb on - strandat 247.672 kb on - strandat 247.730 kb on + strandat 247.731 kb on - strandat 248.015 kb on + strandat 248.015 kb on + strandat 248.015 kb on + strandat 248.031 kb on + strandat 248.032 kb on - strandat 248.042 kb on - strandat 248.060 kb on - strandat 248.171 kb on + strand, within GFF221at 248.171 kb on + strand, within GFF221at 248.171 kb on + strand, within GFF221at 248.171 kb on + strand, within GFF221at 248.172 kb on - strand, within GFF221at 248.297 kb on + strand, within GFF221at 248.297 kb on + strand, within GFF221at 248.297 kb on + strand, within GFF221at 248.297 kb on + strand, within GFF221at 248.298 kb on - strand, within GFF221at 248.298 kb on - strand, within GFF221at 248.298 kb on - strand, within GFF221at 248.298 kb on - strand, within GFF221at 248.298 kb on - strand, within GFF221at 248.327 kb on + strand, within GFF221at 248.327 kb on + strand, within GFF221at 248.466 kb on + strandat 248.466 kb on + strandat 248.466 kb on + strandat 248.466 kb on + strandat 248.467 kb on - strandat 248.467 kb on - strandat 248.467 kb on - strandat 248.467 kb on - strandat 248.467 kb on - strandat 248.467 kb on - strandat 248.468 kb on + strandat 248.468 kb on + strandat 248.468 kb on + strandat 248.469 kb on - strandat 248.504 kb on + strandat 248.504 kb on + strandat 248.505 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
245,944 + GFF217 0.66 +0.4
245,944 + GFF217 0.66 -1.0
245,944 + GFF217 0.66 -1.7
245,944 + GFF217 0.66 +1.4
245,944 + GFF217 0.66 -0.2
245,944 + GFF217 0.66 -0.3
245,989 + GFF217 0.80 +0.9
245,989 + GFF217 0.80 +0.0
245,990 - GFF217 0.80 -0.2
245,990 - GFF217 0.80 +0.3
245,990 - GFF217 0.80 -0.3
245,990 - GFF217 0.80 +0.4
246,017 + GFF217 0.88 +0.8
246,347 + GFF218 0.22 -0.6
246,348 - GFF218 0.22 -0.7
246,348 - GFF218 0.22 -0.7
246,536 + GFF218 0.48 +0.0
246,554 + GFF218 0.51 -0.5
246,773 + GFF218 0.81 -0.3
246,773 + GFF218 0.81 +1.4
246,773 + GFF218 0.81 -1.4
246,774 - GFF218 0.81 -0.3
246,774 - GFF218 0.81 +0.0
246,774 - GFF218 0.81 -2.3
246,923 + -0.7
246,923 + -0.5
246,923 + +0.2
246,924 - -0.2
246,924 - -1.5
246,924 - -1.3
246,924 - -0.5
246,924 - -0.6
246,962 + +0.5
247,082 - GFF219 0.20 -0.7
247,190 + GFF219 0.34 -1.3
247,190 + GFF219 0.34 +0.6
247,191 - GFF219 0.34 +1.2
247,203 + GFF219 0.35 -0.7
247,298 + GFF219 0.47 +0.5
247,299 - GFF219 0.47 +0.5
247,470 - GFF219 0.69 +1.4
247,470 - GFF219 0.69 +0.0
247,499 + GFF219 0.73 +0.3
247,499 + GFF219 0.73 +0.6
247,499 + GFF219 0.73 +1.4
247,500 - GFF219 0.73 +1.7
247,635 - GFF219 0.90 +0.5
247,635 - GFF219 0.90 +0.5
247,667 + +0.2
247,667 + +1.2
247,667 + -1.4
247,668 - +0.6
247,671 + -0.2
247,671 + -0.8
247,671 + -0.4
247,672 - -0.2
247,672 - -0.1
247,672 - -0.7
247,672 - -0.1
247,730 + +0.3
247,731 - -0.8
248,015 + +0.6
248,015 + +0.2
248,015 + -0.4
248,031 + -1.1
248,032 - -0.1
248,042 - +0.2
248,060 - -1.1
248,171 + GFF221 0.32 +0.6
248,171 + GFF221 0.32 -1.2
248,171 + GFF221 0.32 +0.5
248,171 + GFF221 0.32 -1.4
248,172 - GFF221 0.32 +1.2
248,297 + GFF221 0.65 -1.2
248,297 + GFF221 0.65 +0.5
248,297 + GFF221 0.65 +0.5
248,297 + GFF221 0.65 -0.8
248,298 - GFF221 0.65 +0.3
248,298 - GFF221 0.65 -1.2
248,298 - GFF221 0.65 +0.2
248,298 - GFF221 0.65 +1.1
248,298 - GFF221 0.65 +0.5
248,327 + GFF221 0.73 -1.4
248,327 + GFF221 0.73 +1.4
248,466 + -0.2
248,466 + +0.6
248,466 + -0.7
248,466 + -0.5
248,467 - +0.2
248,467 - +1.2
248,467 - -0.7
248,467 - -1.1
248,467 - -1.6
248,467 - -1.6
248,468 + +1.1
248,468 + -0.2
248,468 + -0.0
248,469 - +0.2
248,504 + -0.1
248,504 + +0.2
248,505 - -0.5

Or see this region's nucleotide sequence