Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2139 and GFF2140 are separated by 107 nucleotides GFF2140 and GFF2141 are separated by 44 nucleotides GFF2141 and GFF2142 overlap by 4 nucleotides
GFF2139 - dCTP deaminase, at 387,284 to 387,850
GFF2139
GFF2140 - hypothetical protein, at 387,958 to 388,167
GFF2140
GFF2141 - hypothetical protein, at 388,212 to 388,865
GFF2141
GFF2142 - hypothetical protein, at 388,862 to 391,351
GFF2142
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1 at 387.012 kb on + strand at 387.013 kb on - strand at 387.013 kb on - strand at 387.013 kb on - strand at 387.013 kb on - strand at 387.037 kb on + strand at 387.037 kb on + strand at 387.037 kb on + strand at 387.037 kb on + strand at 387.037 kb on + strand at 387.037 kb on + strand at 387.037 kb on + strand at 387.085 kb on + strand at 387.085 kb on + strand at 387.136 kb on + strand at 387.136 kb on + strand at 387.178 kb on + strand at 387.179 kb on - strand at 387.179 kb on - strand at 387.265 kb on + strand at 387.265 kb on + strand at 387.266 kb on - strand at 387.396 kb on - strand, within GFF2139 at 387.624 kb on - strand, within GFF2139 at 387.624 kb on - strand, within GFF2139 at 387.624 kb on - strand, within GFF2139 at 387.813 kb on - strand at 387.832 kb on - strand at 387.832 kb on - strand at 387.897 kb on + strand at 387.897 kb on + strand at 387.897 kb on + strand at 387.897 kb on + strand at 387.897 kb on + strand at 387.898 kb on - strand at 387.898 kb on - strand at 387.898 kb on - strand at 387.898 kb on - strand at 387.906 kb on + strand at 387.906 kb on + strand at 387.906 kb on + strand at 387.906 kb on + strand at 387.907 kb on - strand at 387.922 kb on + strand at 387.922 kb on + strand at 388.013 kb on + strand, within GFF2140 at 388.034 kb on + strand, within GFF2140 at 388.182 kb on + strand at 388.182 kb on + strand at 388.182 kb on + strand at 388.183 kb on - strand at 388.183 kb on - strand at 388.213 kb on + strand at 388.213 kb on + strand at 388.213 kb on + strand at 388.213 kb on + strand at 388.214 kb on - strand at 388.227 kb on + strand at 388.227 kb on + strand at 388.227 kb on + strand at 388.228 kb on - strand at 388.385 kb on - strand, within GFF2141 at 388.385 kb on - strand, within GFF2141 at 388.468 kb on - strand, within GFF2141 at 388.482 kb on + strand, within GFF2141 at 388.483 kb on - strand, within GFF2141 at 388.483 kb on - strand, within GFF2141 at 388.686 kb on + strand, within GFF2141 at 388.686 kb on + strand, within GFF2141 at 388.686 kb on + strand, within GFF2141 at 388.686 kb on + strand, within GFF2141 at 388.687 kb on - strand, within GFF2141 at 388.801 kb on + strand at 388.801 kb on + strand at 388.802 kb on - strand at 388.802 kb on - strand at 388.802 kb on - strand at 388.802 kb on - strand at 388.991 kb on - strand at 389.000 kb on - strand at 389.079 kb on - strand at 389.124 kb on + strand, within GFF2142 at 389.124 kb on + strand, within GFF2142 at 389.124 kb on + strand, within GFF2142 at 389.125 kb on - strand, within GFF2142 at 389.125 kb on - strand, within GFF2142 at 389.125 kb on - strand, within GFF2142 at 389.125 kb on - strand, within GFF2142 at 389.125 kb on - strand, within GFF2142
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 387,012 + +0.6 387,013 - -0.4 387,013 - +0.4 387,013 - -0.3 387,013 - -0.1 387,037 + -0.6 387,037 + -0.2 387,037 + -0.4 387,037 + +0.2 387,037 + +0.3 387,037 + +0.4 387,037 + +0.9 387,085 + -1.1 387,085 + -0.9 387,136 + +0.6 387,136 + -0.9 387,178 + -1.7 387,179 - +0.4 387,179 - -0.8 387,265 + -0.0 387,265 + -1.0 387,266 - -1.9 387,396 - GFF2139 0.20 -1.4 387,624 - GFF2139 0.60 -0.4 387,624 - GFF2139 0.60 -1.0 387,624 - GFF2139 0.60 -1.4 387,813 - -0.9 387,832 - -1.0 387,832 - -0.7 387,897 + +0.4 387,897 + +0.2 387,897 + +0.7 387,897 + -0.7 387,897 + -0.2 387,898 - -0.1 387,898 - +1.3 387,898 - +0.4 387,898 - +0.3 387,906 + +0.7 387,906 + -0.9 387,906 + -0.9 387,906 + -0.0 387,907 - -1.0 387,922 + -0.0 387,922 + -2.3 388,013 + GFF2140 0.26 -0.8 388,034 + GFF2140 0.36 -0.2 388,182 + -1.2 388,182 + +0.7 388,182 + -0.7 388,183 - +0.4 388,183 - +0.6 388,213 + -0.2 388,213 + +0.8 388,213 + +1.6 388,213 + -1.3 388,214 - -2.4 388,227 + -0.1 388,227 + -0.4 388,227 + +0.6 388,228 - +0.8 388,385 - GFF2141 0.26 +0.1 388,385 - GFF2141 0.26 +0.3 388,468 - GFF2141 0.39 +0.4 388,482 + GFF2141 0.41 -1.0 388,483 - GFF2141 0.41 -0.4 388,483 - GFF2141 0.41 -0.2 388,686 + GFF2141 0.72 +0.2 388,686 + GFF2141 0.72 -0.9 388,686 + GFF2141 0.72 +0.6 388,686 + GFF2141 0.72 -0.7 388,687 - GFF2141 0.73 -0.7 388,801 + -0.4 388,801 + -0.2 388,802 - -0.9 388,802 - -0.8 388,802 - -0.4 388,802 - +0.2 388,991 - -0.0 389,000 - -1.1 389,079 - -2.5 389,124 + GFF2142 0.11 +0.8 389,124 + GFF2142 0.11 +0.2 389,124 + GFF2142 0.11 -0.1 389,125 - GFF2142 0.11 -0.2 389,125 - GFF2142 0.11 +0.4 389,125 - GFF2142 0.11 -0.3 389,125 - GFF2142 0.11 +1.1 389,125 - GFF2142 0.11 -0.1
Or see this region's nucleotide sequence