Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2009 and GFF2010 overlap by 4 nucleotides GFF2010 and GFF2011 overlap by 4 nucleotides GFF2011 and GFF2012 overlap by 4 nucleotides
GFF2009 - putative biofilm formation methyltransferase WspC, at 247,304 to 248,578
GFF2009
GFF2010 - hypothetical protein, at 248,575 to 249,258
GFF2010
GFF2011 - Sensor histidine kinase RcsC, at 249,255 to 251,525
GFF2011
GFF2012 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 251,522 to 252,532
GFF2012
Position (kb) 249
250
251
252 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 248.330 kb on + strand, within GFF2009 at 248.330 kb on + strand, within GFF2009 at 248.367 kb on - strand, within GFF2009 at 248.367 kb on - strand, within GFF2009 at 248.438 kb on + strand, within GFF2009 at 248.438 kb on + strand, within GFF2009 at 248.438 kb on + strand, within GFF2009 at 248.438 kb on + strand, within GFF2009 at 248.438 kb on + strand, within GFF2009 at 248.438 kb on + strand, within GFF2009 at 248.439 kb on - strand, within GFF2009 at 248.439 kb on - strand, within GFF2009 at 248.488 kb on - strand at 248.570 kb on - strand at 248.713 kb on + strand, within GFF2010 at 248.713 kb on + strand, within GFF2010 at 248.714 kb on - strand, within GFF2010 at 248.895 kb on - strand, within GFF2010 at 248.895 kb on - strand, within GFF2010 at 248.895 kb on - strand, within GFF2010 at 249.074 kb on + strand, within GFF2010 at 249.166 kb on + strand, within GFF2010 at 249.609 kb on + strand, within GFF2011 at 249.609 kb on + strand, within GFF2011 at 249.609 kb on + strand, within GFF2011 at 250.719 kb on + strand, within GFF2011 at 250.719 kb on + strand, within GFF2011 at 250.881 kb on - strand, within GFF2011 at 251.394 kb on + strand at 251.394 kb on + strand at 251.395 kb on - strand at 251.445 kb on + strand at 251.445 kb on + strand at 251.445 kb on + strand at 251.446 kb on - strand at 251.448 kb on + strand at 251.448 kb on + strand at 251.449 kb on - strand at 251.449 kb on - strand at 251.748 kb on + strand, within GFF2012 at 251.948 kb on - strand, within GFF2012 at 251.980 kb on - strand, within GFF2012 at 252.208 kb on + strand, within GFF2012 at 252.209 kb on - strand, within GFF2012 at 252.209 kb on - strand, within GFF2012 at 252.209 kb on - strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.267 kb on - strand, within GFF2012 at 252.267 kb on - strand, within GFF2012 at 252.308 kb on + strand, within GFF2012 at 252.309 kb on - strand, within GFF2012 at 252.309 kb on - strand, within GFF2012 at 252.336 kb on + strand, within GFF2012 at 252.373 kb on + strand, within GFF2012 at 252.374 kb on - strand, within GFF2012 at 252.395 kb on + strand, within GFF2012
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 248,330 + GFF2009 0.80 -0.4 248,330 + GFF2009 0.80 +0.9 248,367 - GFF2009 0.83 +0.4 248,367 - GFF2009 0.83 +0.3 248,438 + GFF2009 0.89 +1.9 248,438 + GFF2009 0.89 +0.0 248,438 + GFF2009 0.89 -0.2 248,438 + GFF2009 0.89 -0.8 248,438 + GFF2009 0.89 +0.1 248,438 + GFF2009 0.89 +0.8 248,439 - GFF2009 0.89 -0.3 248,439 - GFF2009 0.89 +0.5 248,488 - -0.5 248,570 - -0.7 248,713 + GFF2010 0.20 +0.8 248,713 + GFF2010 0.20 -0.4 248,714 - GFF2010 0.20 +0.9 248,895 - GFF2010 0.47 -0.6 248,895 - GFF2010 0.47 +0.9 248,895 - GFF2010 0.47 -0.6 249,074 + GFF2010 0.73 +0.3 249,166 + GFF2010 0.86 +0.2 249,609 + GFF2011 0.16 -0.3 249,609 + GFF2011 0.16 +0.2 249,609 + GFF2011 0.16 +0.6 250,719 + GFF2011 0.64 +0.9 250,719 + GFF2011 0.64 -0.6 250,881 - GFF2011 0.72 +1.0 251,394 + +0.8 251,394 + -1.2 251,395 - +0.3 251,445 + -0.2 251,445 + +0.1 251,445 + +1.1 251,446 - -0.0 251,448 + +0.2 251,448 + +0.4 251,449 - -0.8 251,449 - +0.2 251,748 + GFF2012 0.22 -2.6 251,948 - GFF2012 0.42 -1.1 251,980 - GFF2012 0.45 -0.3 252,208 + GFF2012 0.68 -1.9 252,209 - GFF2012 0.68 +0.4 252,209 - GFF2012 0.68 -0.4 252,209 - GFF2012 0.68 -0.4 252,266 + GFF2012 0.74 -2.8 252,266 + GFF2012 0.74 -2.4 252,266 + GFF2012 0.74 -1.6 252,266 + GFF2012 0.74 -2.6 252,266 + GFF2012 0.74 -2.4 252,267 - GFF2012 0.74 -1.1 252,267 - GFF2012 0.74 -1.0 252,308 + GFF2012 0.78 -3.7 252,309 - GFF2012 0.78 -0.2 252,309 - GFF2012 0.78 -0.4 252,336 + GFF2012 0.81 -1.9 252,373 + GFF2012 0.84 -4.8 252,374 - GFF2012 0.84 -0.4 252,395 + GFF2012 0.86 -1.8
Or see this region's nucleotide sequence