Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1949 and GFF1950 are separated by 128 nucleotides GFF1950 and GFF1951 are separated by 8 nucleotides GFF1951 and GFF1952 are separated by 57 nucleotides
GFF1949 - Valine--tRNA ligase, at 169,844 to 172,690
GFF1949
GFF1950 - hypothetical protein, at 172,819 to 173,217
GFF1950
GFF1951 - DNA polymerase III subunit chi, at 173,226 to 173,654
GFF1951
GFF1952 - Cytosol aminopeptidase, at 173,712 to 175,202
GFF1952
Position (kb) 173
174 Strain fitness (log2 ratio) -1
0
1
2 at 172.737 kb on - strand at 172.820 kb on + strand at 172.820 kb on + strand at 173.109 kb on + strand, within GFF1950 at 173.260 kb on + strand at 173.260 kb on + strand at 173.261 kb on - strand at 173.548 kb on + strand, within GFF1951 at 173.549 kb on - strand, within GFF1951 at 173.549 kb on - strand, within GFF1951 at 173.635 kb on + strand at 173.635 kb on + strand at 173.635 kb on + strand at 173.635 kb on + strand at 173.635 kb on + strand at 173.635 kb on + strand at 173.636 kb on - strand at 173.636 kb on - strand at 173.636 kb on - strand at 173.636 kb on - strand at 173.636 kb on - strand at 173.636 kb on - strand at 173.636 kb on - strand at 173.636 kb on - strand at 173.636 kb on - strand at 173.636 kb on - strand at 173.737 kb on + strand at 174.060 kb on + strand, within GFF1952 at 174.060 kb on + strand, within GFF1952 at 174.060 kb on + strand, within GFF1952 at 174.060 kb on + strand, within GFF1952 at 174.061 kb on - strand, within GFF1952 at 174.061 kb on - strand, within GFF1952 at 174.061 kb on - strand, within GFF1952 at 174.122 kb on - strand, within GFF1952 at 174.122 kb on - strand, within GFF1952 at 174.341 kb on - strand, within GFF1952 at 174.341 kb on - strand, within GFF1952 at 174.452 kb on - strand, within GFF1952 at 174.452 kb on - strand, within GFF1952 at 174.452 kb on - strand, within GFF1952 at 174.503 kb on - strand, within GFF1952 at 174.503 kb on - strand, within GFF1952 at 174.503 kb on - strand, within GFF1952
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 172,737 - +1.0 172,820 + -0.5 172,820 + -0.2 173,109 + GFF1950 0.73 -0.2 173,260 + -1.6 173,260 + +0.3 173,261 - +0.5 173,548 + GFF1951 0.75 +0.2 173,549 - GFF1951 0.75 +0.5 173,549 - GFF1951 0.75 +1.0 173,635 + -1.6 173,635 + +0.5 173,635 + -0.1 173,635 + +0.9 173,635 + -0.4 173,635 + +0.6 173,636 - -0.6 173,636 - -0.5 173,636 - +2.0 173,636 - -1.0 173,636 - -1.2 173,636 - +0.3 173,636 - +1.0 173,636 - -0.7 173,636 - +0.5 173,636 - +0.2 173,737 + -0.6 174,060 + GFF1952 0.23 -1.2 174,060 + GFF1952 0.23 -1.1 174,060 + GFF1952 0.23 -0.7 174,060 + GFF1952 0.23 +0.5 174,061 - GFF1952 0.23 -1.0 174,061 - GFF1952 0.23 +0.1 174,061 - GFF1952 0.23 -0.7 174,122 - GFF1952 0.27 +0.4 174,122 - GFF1952 0.27 -1.6 174,341 - GFF1952 0.42 -1.3 174,341 - GFF1952 0.42 +0.4 174,452 - GFF1952 0.50 +0.4 174,452 - GFF1952 0.50 +0.4 174,452 - GFF1952 0.50 +0.2 174,503 - GFF1952 0.53 -0.1 174,503 - GFF1952 0.53 -0.4 174,503 - GFF1952 0.53 -0.8
Or see this region's nucleotide sequence