Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1621 and GFF1622 are separated by 65 nucleotides GFF1622 and GFF1623 are separated by 110 nucleotides GFF1623 and GFF1624 are separated by 260 nucleotides
GFF1621 - Colistin resistance protein EmrA, at 405,948 to 407,090
GFF1621
GFF1622 - hypothetical protein, at 407,156 to 407,350
GFF1622
GFF1623 - RNA 2',3'-cyclic phosphodiesterase, at 407,461 to 407,997
GFF1623
GFF1624 - Putrescine-binding periplasmic protein SpuD, at 408,258 to 409,355
GFF1624
Position (kb) 407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 406.734 kb on + strand, within GFF1621 at 406.734 kb on + strand, within GFF1621 at 406.734 kb on + strand, within GFF1621 at 406.735 kb on - strand, within GFF1621 at 406.735 kb on - strand, within GFF1621 at 406.841 kb on - strand, within GFF1621 at 406.848 kb on - strand, within GFF1621 at 406.895 kb on + strand, within GFF1621 at 406.895 kb on + strand, within GFF1621 at 406.895 kb on + strand, within GFF1621 at 406.896 kb on - strand, within GFF1621 at 406.896 kb on - strand, within GFF1621 at 406.896 kb on - strand, within GFF1621 at 407.138 kb on - strand at 407.154 kb on - strand at 407.154 kb on - strand at 407.154 kb on - strand at 407.256 kb on + strand, within GFF1622 at 407.256 kb on + strand, within GFF1622 at 407.257 kb on - strand, within GFF1622 at 407.257 kb on - strand, within GFF1622 at 407.257 kb on - strand, within GFF1622 at 407.382 kb on + strand at 407.382 kb on + strand at 407.382 kb on + strand at 407.384 kb on + strand at 407.384 kb on + strand at 407.384 kb on + strand at 407.385 kb on - strand at 407.419 kb on + strand at 407.420 kb on - strand at 407.420 kb on - strand at 407.596 kb on - strand, within GFF1623 at 407.680 kb on - strand, within GFF1623 at 407.680 kb on - strand, within GFF1623 at 407.680 kb on - strand, within GFF1623 at 407.780 kb on + strand, within GFF1623 at 407.780 kb on + strand, within GFF1623 at 407.781 kb on - strand, within GFF1623 at 407.791 kb on + strand, within GFF1623 at 408.211 kb on + strand at 408.222 kb on + strand at 408.259 kb on + strand at 408.259 kb on + strand at 408.259 kb on + strand at 408.260 kb on - strand at 408.260 kb on - strand at 408.260 kb on - strand at 408.260 kb on - strand at 408.260 kb on - strand at 408.260 kb on - strand at 408.334 kb on + strand at 408.334 kb on + strand at 408.334 kb on + strand at 408.334 kb on + strand at 408.334 kb on + strand at 408.334 kb on + strand at 408.334 kb on + strand at 408.334 kb on + strand at 408.334 kb on + strand at 408.335 kb on - strand at 408.335 kb on - strand at 408.335 kb on - strand at 408.335 kb on - strand at 408.335 kb on - strand at 408.335 kb on - strand at 408.365 kb on - strand at 408.494 kb on - strand, within GFF1624 at 408.494 kb on - strand, within GFF1624 at 408.574 kb on + strand, within GFF1624 at 408.575 kb on - strand, within GFF1624 at 408.685 kb on + strand, within GFF1624 at 408.685 kb on + strand, within GFF1624 at 408.703 kb on + strand, within GFF1624 at 408.703 kb on + strand, within GFF1624 at 408.704 kb on - strand, within GFF1624 at 408.712 kb on + strand, within GFF1624 at 408.712 kb on + strand, within GFF1624 at 408.790 kb on + strand, within GFF1624 at 408.790 kb on + strand, within GFF1624 at 408.790 kb on + strand, within GFF1624 at 408.790 kb on + strand, within GFF1624 at 408.790 kb on + strand, within GFF1624 at 408.790 kb on + strand, within GFF1624 at 408.790 kb on + strand, within GFF1624 at 408.790 kb on + strand, within GFF1624 at 408.791 kb on - strand, within GFF1624 at 408.882 kb on + strand, within GFF1624 at 408.882 kb on + strand, within GFF1624 at 408.882 kb on + strand, within GFF1624 at 408.882 kb on + strand, within GFF1624 at 408.882 kb on + strand, within GFF1624 at 408.883 kb on - strand, within GFF1624 at 408.883 kb on - strand, within GFF1624 at 408.883 kb on - strand, within GFF1624 at 408.883 kb on - strand, within GFF1624 at 408.970 kb on + strand, within GFF1624 at 408.970 kb on + strand, within GFF1624 at 408.971 kb on - strand, within GFF1624 at 408.971 kb on - strand, within GFF1624 at 408.971 kb on - strand, within GFF1624
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 406,734 + GFF1621 0.69 +0.3 406,734 + GFF1621 0.69 +0.0 406,734 + GFF1621 0.69 +0.3 406,735 - GFF1621 0.69 +0.6 406,735 - GFF1621 0.69 +0.5 406,841 - GFF1621 0.78 +0.2 406,848 - GFF1621 0.79 -0.0 406,895 + GFF1621 0.83 +0.0 406,895 + GFF1621 0.83 -0.9 406,895 + GFF1621 0.83 -0.7 406,896 - GFF1621 0.83 -0.8 406,896 - GFF1621 0.83 -0.2 406,896 - GFF1621 0.83 -0.4 407,138 - +0.3 407,154 - -0.1 407,154 - -1.6 407,154 - -0.9 407,256 + GFF1622 0.51 -0.7 407,256 + GFF1622 0.51 +1.1 407,257 - GFF1622 0.52 +0.5 407,257 - GFF1622 0.52 -0.1 407,257 - GFF1622 0.52 +0.4 407,382 + +0.5 407,382 + -0.2 407,382 + -1.7 407,384 + +0.7 407,384 + -0.5 407,384 + -0.3 407,385 - +0.1 407,419 + +0.5 407,420 - -1.6 407,420 - +0.6 407,596 - GFF1623 0.25 +1.7 407,680 - GFF1623 0.41 -1.1 407,680 - GFF1623 0.41 +0.3 407,680 - GFF1623 0.41 +0.2 407,780 + GFF1623 0.59 -0.7 407,780 + GFF1623 0.59 +1.5 407,781 - GFF1623 0.60 +1.3 407,791 + GFF1623 0.61 -0.8 408,211 + +0.3 408,222 + -0.5 408,259 + +0.7 408,259 + +0.3 408,259 + -0.5 408,260 - -0.1 408,260 - +0.1 408,260 - -0.5 408,260 - +0.7 408,260 - +0.2 408,260 - -0.4 408,334 + -1.4 408,334 + -0.2 408,334 + -0.2 408,334 + -2.8 408,334 + +0.4 408,334 + -0.1 408,334 + -0.2 408,334 + +0.5 408,334 + -0.6 408,335 - +0.1 408,335 - +0.0 408,335 - -1.1 408,335 - +0.3 408,335 - +0.5 408,335 - +0.4 408,365 - -1.7 408,494 - GFF1624 0.21 +0.5 408,494 - GFF1624 0.21 +0.3 408,574 + GFF1624 0.29 -0.5 408,575 - GFF1624 0.29 +0.5 408,685 + GFF1624 0.39 -0.0 408,685 + GFF1624 0.39 +0.6 408,703 + GFF1624 0.41 -0.5 408,703 + GFF1624 0.41 -0.2 408,704 - GFF1624 0.41 -0.5 408,712 + GFF1624 0.41 -0.3 408,712 + GFF1624 0.41 +1.1 408,790 + GFF1624 0.48 -0.5 408,790 + GFF1624 0.48 -0.0 408,790 + GFF1624 0.48 +0.2 408,790 + GFF1624 0.48 +0.0 408,790 + GFF1624 0.48 -1.3 408,790 + GFF1624 0.48 +0.5 408,790 + GFF1624 0.48 +0.3 408,790 + GFF1624 0.48 +0.7 408,791 - GFF1624 0.49 -0.4 408,882 + GFF1624 0.57 +0.2 408,882 + GFF1624 0.57 -0.2 408,882 + GFF1624 0.57 +0.3 408,882 + GFF1624 0.57 +1.5 408,882 + GFF1624 0.57 -0.1 408,883 - GFF1624 0.57 -0.3 408,883 - GFF1624 0.57 -0.6 408,883 - GFF1624 0.57 +1.0 408,883 - GFF1624 0.57 +1.2 408,970 + GFF1624 0.65 -0.3 408,970 + GFF1624 0.65 -0.2 408,971 - GFF1624 0.65 -0.1 408,971 - GFF1624 0.65 +0.5 408,971 - GFF1624 0.65 -0.5
Or see this region's nucleotide sequence