Strain Fitness in Pseudomonas sp. DMC3 around GFF1598

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1596 and GFF1597 are separated by 181 nucleotidesGFF1597 and GFF1598 overlap by 11 nucleotidesGFF1598 and GFF1599 are separated by 84 nucleotides GFF1596 - hypothetical protein, at 379,030 to 380,142 GFF1596 GFF1597 - hypothetical protein, at 380,324 to 381,040 GFF1597 GFF1598 - hypothetical protein, at 381,030 to 381,587 GFF1598 GFF1599 - hypothetical protein, at 381,672 to 382,445 GFF1599 Position (kb) 381 382Strain fitness (log2 ratio) -1 0 1at 380.065 kb on + strandat 380.067 kb on + strandat 380.281 kb on + strandat 380.411 kb on + strand, within GFF1597at 380.412 kb on - strand, within GFF1597at 380.479 kb on + strand, within GFF1597at 380.526 kb on - strand, within GFF1597at 380.526 kb on - strand, within GFF1597at 380.526 kb on - strand, within GFF1597at 380.526 kb on - strand, within GFF1597at 380.526 kb on - strand, within GFF1597at 380.531 kb on + strand, within GFF1597at 380.531 kb on + strand, within GFF1597at 380.531 kb on + strand, within GFF1597at 380.532 kb on - strand, within GFF1597at 380.532 kb on - strand, within GFF1597at 380.606 kb on + strand, within GFF1597at 380.606 kb on + strand, within GFF1597at 380.607 kb on - strand, within GFF1597at 380.607 kb on - strand, within GFF1597at 380.681 kb on + strand, within GFF1597at 380.682 kb on - strand, within GFF1597at 380.705 kb on + strand, within GFF1597at 380.705 kb on + strand, within GFF1597at 380.706 kb on - strand, within GFF1597at 380.741 kb on + strand, within GFF1597at 380.742 kb on - strand, within GFF1597at 380.859 kb on + strand, within GFF1597at 380.859 kb on + strand, within GFF1597at 380.859 kb on + strand, within GFF1597at 380.859 kb on + strand, within GFF1597at 380.859 kb on + strand, within GFF1597at 380.860 kb on - strand, within GFF1597at 380.860 kb on - strand, within GFF1597at 380.860 kb on - strand, within GFF1597at 380.860 kb on - strand, within GFF1597at 380.860 kb on - strand, within GFF1597at 380.860 kb on - strand, within GFF1597at 380.860 kb on - strand, within GFF1597at 380.860 kb on - strand, within GFF1597at 380.897 kb on + strand, within GFF1597at 380.897 kb on + strand, within GFF1597at 380.943 kb on - strand, within GFF1597at 380.964 kb on - strand, within GFF1597at 381.385 kb on + strand, within GFF1598at 381.386 kb on - strand, within GFF1598at 381.386 kb on - strand, within GFF1598at 381.386 kb on - strand, within GFF1598at 381.386 kb on - strand, within GFF1598at 381.479 kb on + strand, within GFF1598at 381.479 kb on + strand, within GFF1598at 381.673 kb on + strandat 381.823 kb on + strand, within GFF1599at 381.824 kb on - strand, within GFF1599at 381.824 kb on - strand, within GFF1599at 381.824 kb on - strand, within GFF1599at 381.824 kb on - strand, within GFF1599at 381.824 kb on - strand, within GFF1599at 381.850 kb on - strand, within GFF1599at 382.073 kb on - strand, within GFF1599at 382.222 kb on + strand, within GFF1599at 382.222 kb on + strand, within GFF1599at 382.222 kb on + strand, within GFF1599at 382.222 kb on + strand, within GFF1599at 382.223 kb on - strand, within GFF1599at 382.223 kb on - strand, within GFF1599at 382.223 kb on - strand, within GFF1599at 382.226 kb on + strand, within GFF1599at 382.226 kb on + strand, within GFF1599at 382.226 kb on + strand, within GFF1599at 382.227 kb on - strand, within GFF1599at 382.227 kb on - strand, within GFF1599at 382.227 kb on - strand, within GFF1599at 382.227 kb on - strand, within GFF1599at 382.481 kb on - strandat 382.481 kb on - strandat 382.553 kb on - strandat 382.553 kb on - strandat 382.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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380,065 + -0.9
380,067 + +0.5
380,281 + +0.2
380,411 + GFF1597 0.12 +0.3
380,412 - GFF1597 0.12 -1.1
380,479 + GFF1597 0.22 -0.5
380,526 - GFF1597 0.28 -0.2
380,526 - GFF1597 0.28 -0.1
380,526 - GFF1597 0.28 +0.2
380,526 - GFF1597 0.28 +0.6
380,526 - GFF1597 0.28 +0.6
380,531 + GFF1597 0.29 -1.2
380,531 + GFF1597 0.29 -0.6
380,531 + GFF1597 0.29 +0.2
380,532 - GFF1597 0.29 -1.2
380,532 - GFF1597 0.29 +0.0
380,606 + GFF1597 0.39 +0.7
380,606 + GFF1597 0.39 +0.8
380,607 - GFF1597 0.39 -0.7
380,607 - GFF1597 0.39 +0.5
380,681 + GFF1597 0.50 +0.9
380,682 - GFF1597 0.50 -0.4
380,705 + GFF1597 0.53 +0.9
380,705 + GFF1597 0.53 -1.0
380,706 - GFF1597 0.53 +0.0
380,741 + GFF1597 0.58 +0.1
380,742 - GFF1597 0.58 -0.7
380,859 + GFF1597 0.75 -0.4
380,859 + GFF1597 0.75 -0.8
380,859 + GFF1597 0.75 +0.2
380,859 + GFF1597 0.75 -0.5
380,859 + GFF1597 0.75 -0.8
380,860 - GFF1597 0.75 -1.1
380,860 - GFF1597 0.75 -1.5
380,860 - GFF1597 0.75 -0.8
380,860 - GFF1597 0.75 +0.5
380,860 - GFF1597 0.75 +0.1
380,860 - GFF1597 0.75 -0.8
380,860 - GFF1597 0.75 -0.1
380,860 - GFF1597 0.75 -0.8
380,897 + GFF1597 0.80 +0.4
380,897 + GFF1597 0.80 -0.5
380,943 - GFF1597 0.86 -0.0
380,964 - GFF1597 0.89 -0.1
381,385 + GFF1598 0.64 -0.8
381,386 - GFF1598 0.64 -1.0
381,386 - GFF1598 0.64 -0.1
381,386 - GFF1598 0.64 -0.5
381,386 - GFF1598 0.64 +0.3
381,479 + GFF1598 0.80 -1.6
381,479 + GFF1598 0.80 -0.9
381,673 + -0.8
381,823 + GFF1599 0.20 -0.0
381,824 - GFF1599 0.20 +0.6
381,824 - GFF1599 0.20 +0.4
381,824 - GFF1599 0.20 -0.0
381,824 - GFF1599 0.20 -0.6
381,824 - GFF1599 0.20 +0.6
381,850 - GFF1599 0.23 +0.3
382,073 - GFF1599 0.52 -1.0
382,222 + GFF1599 0.71 +0.3
382,222 + GFF1599 0.71 +0.5
382,222 + GFF1599 0.71 -0.1
382,222 + GFF1599 0.71 -0.5
382,223 - GFF1599 0.71 -0.9
382,223 - GFF1599 0.71 +0.3
382,223 - GFF1599 0.71 +0.6
382,226 + GFF1599 0.72 -0.3
382,226 + GFF1599 0.72 +0.3
382,226 + GFF1599 0.72 -0.1
382,227 - GFF1599 0.72 +0.2
382,227 - GFF1599 0.72 -1.2
382,227 - GFF1599 0.72 -1.2
382,227 - GFF1599 0.72 +0.0
382,481 - -0.3
382,481 - -0.0
382,553 - +0.3
382,553 - +0.2
382,553 - -0.3

Or see this region's nucleotide sequence