Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1595 and GFF1596 are separated by 211 nucleotides GFF1596 and GFF1597 are separated by 181 nucleotides GFF1597 and GFF1598 overlap by 11 nucleotides
GFF1595 - Lysine/arginine/ornithine-binding periplasmic protein, at 378,039 to 378,818
GFF1595
GFF1596 - hypothetical protein, at 379,030 to 380,142
GFF1596
GFF1597 - hypothetical protein, at 380,324 to 381,040
GFF1597
GFF1598 - hypothetical protein, at 381,030 to 381,587
GFF1598
Position (kb) 379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 378.033 kb on + strand at 378.034 kb on - strand at 378.034 kb on - strand at 378.034 kb on - strand at 378.034 kb on - strand at 378.036 kb on + strand at 378.036 kb on + strand at 378.036 kb on + strand at 378.036 kb on + strand at 378.037 kb on - strand at 378.037 kb on - strand at 378.037 kb on - strand at 378.037 kb on - strand at 378.037 kb on - strand at 378.049 kb on + strand at 378.049 kb on + strand at 378.050 kb on - strand at 378.231 kb on - strand, within GFF1595 at 378.360 kb on + strand, within GFF1595 at 378.360 kb on + strand, within GFF1595 at 378.360 kb on + strand, within GFF1595 at 378.360 kb on + strand, within GFF1595 at 378.361 kb on - strand, within GFF1595 at 378.361 kb on - strand, within GFF1595 at 378.361 kb on - strand, within GFF1595 at 378.361 kb on - strand, within GFF1595 at 378.364 kb on - strand, within GFF1595 at 378.364 kb on - strand, within GFF1595 at 378.364 kb on - strand, within GFF1595 at 378.462 kb on - strand, within GFF1595 at 378.654 kb on + strand, within GFF1595 at 378.654 kb on + strand, within GFF1595 at 378.655 kb on - strand, within GFF1595 at 378.669 kb on + strand, within GFF1595 at 378.669 kb on + strand, within GFF1595 at 378.768 kb on + strand at 378.769 kb on - strand at 378.789 kb on + strand at 378.789 kb on + strand at 378.789 kb on + strand at 378.790 kb on - strand at 378.790 kb on - strand at 378.790 kb on - strand at 378.790 kb on - strand at 378.790 kb on - strand at 378.790 kb on - strand at 378.790 kb on - strand at 378.790 kb on - strand at 378.790 kb on - strand at 378.805 kb on + strand at 378.805 kb on + strand at 378.805 kb on + strand at 378.805 kb on + strand at 378.805 kb on + strand at 378.805 kb on + strand at 378.805 kb on + strand at 378.805 kb on + strand at 378.806 kb on - strand at 378.806 kb on - strand at 378.807 kb on + strand at 378.807 kb on + strand at 378.808 kb on - strand at 378.808 kb on - strand at 378.808 kb on - strand at 378.816 kb on + strand at 378.817 kb on - strand at 378.819 kb on + strand at 378.820 kb on - strand at 378.880 kb on + strand at 378.880 kb on + strand at 378.880 kb on + strand at 378.881 kb on - strand at 378.881 kb on - strand at 378.881 kb on - strand at 378.886 kb on + strand at 378.887 kb on - strand at 378.887 kb on - strand at 378.929 kb on - strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.944 kb on + strand at 378.994 kb on + strand at 378.995 kb on - strand at 378.995 kb on - strand at 378.995 kb on - strand at 379.124 kb on - strand at 379.124 kb on - strand at 379.124 kb on - strand at 379.124 kb on - strand at 379.124 kb on - strand at 379.124 kb on - strand at 379.124 kb on - strand at 379.124 kb on - strand at 379.124 kb on - strand at 379.562 kb on - strand, within GFF1596 at 379.900 kb on + strand, within GFF1596 at 379.900 kb on + strand, within GFF1596 at 379.901 kb on - strand, within GFF1596 at 379.901 kb on - strand, within GFF1596 at 380.065 kb on + strand at 380.067 kb on + strand at 380.281 kb on + strand at 380.411 kb on + strand, within GFF1597 at 380.412 kb on - strand, within GFF1597 at 380.479 kb on + strand, within GFF1597 at 380.526 kb on - strand, within GFF1597 at 380.526 kb on - strand, within GFF1597 at 380.526 kb on - strand, within GFF1597 at 380.526 kb on - strand, within GFF1597 at 380.526 kb on - strand, within GFF1597 at 380.531 kb on + strand, within GFF1597 at 380.531 kb on + strand, within GFF1597 at 380.531 kb on + strand, within GFF1597 at 380.532 kb on - strand, within GFF1597 at 380.532 kb on - strand, within GFF1597 at 380.606 kb on + strand, within GFF1597 at 380.606 kb on + strand, within GFF1597 at 380.607 kb on - strand, within GFF1597 at 380.607 kb on - strand, within GFF1597 at 380.681 kb on + strand, within GFF1597 at 380.682 kb on - strand, within GFF1597 at 380.705 kb on + strand, within GFF1597 at 380.705 kb on + strand, within GFF1597 at 380.706 kb on - strand, within GFF1597 at 380.741 kb on + strand, within GFF1597 at 380.742 kb on - strand, within GFF1597 at 380.859 kb on + strand, within GFF1597 at 380.859 kb on + strand, within GFF1597 at 380.859 kb on + strand, within GFF1597 at 380.859 kb on + strand, within GFF1597 at 380.859 kb on + strand, within GFF1597 at 380.860 kb on - strand, within GFF1597 at 380.860 kb on - strand, within GFF1597 at 380.860 kb on - strand, within GFF1597 at 380.860 kb on - strand, within GFF1597 at 380.860 kb on - strand, within GFF1597 at 380.860 kb on - strand, within GFF1597 at 380.860 kb on - strand, within GFF1597 at 380.860 kb on - strand, within GFF1597 at 380.897 kb on + strand, within GFF1597 at 380.897 kb on + strand, within GFF1597 at 380.943 kb on - strand, within GFF1597 at 380.964 kb on - strand, within GFF1597
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 378,033 + -0.6 378,034 - -1.4 378,034 - -0.5 378,034 - +0.1 378,034 - +0.1 378,036 + +0.2 378,036 + -0.1 378,036 + +0.7 378,036 + -0.6 378,037 - -0.2 378,037 - +0.7 378,037 - -0.0 378,037 - -0.3 378,037 - +0.4 378,049 + -1.6 378,049 + -0.1 378,050 - +0.5 378,231 - GFF1595 0.25 -0.7 378,360 + GFF1595 0.41 +0.2 378,360 + GFF1595 0.41 -0.1 378,360 + GFF1595 0.41 -0.8 378,360 + GFF1595 0.41 -0.3 378,361 - GFF1595 0.41 +0.0 378,361 - GFF1595 0.41 -3.4 378,361 - GFF1595 0.41 +0.5 378,361 - GFF1595 0.41 -0.4 378,364 - GFF1595 0.42 +0.2 378,364 - GFF1595 0.42 +0.4 378,364 - GFF1595 0.42 +1.1 378,462 - GFF1595 0.54 +1.1 378,654 + GFF1595 0.79 +0.9 378,654 + GFF1595 0.79 -0.2 378,655 - GFF1595 0.79 -0.8 378,669 + GFF1595 0.81 +0.5 378,669 + GFF1595 0.81 -0.5 378,768 + +0.2 378,769 - +0.8 378,789 + +0.1 378,789 + +0.3 378,789 + +0.5 378,790 - +0.2 378,790 - -0.1 378,790 - -0.2 378,790 - -2.4 378,790 - -0.5 378,790 - +0.9 378,790 - -1.8 378,790 - -0.4 378,790 - -0.7 378,805 + -0.1 378,805 + +0.3 378,805 + +0.8 378,805 + +1.5 378,805 + -0.8 378,805 + -0.9 378,805 + -0.6 378,805 + +0.3 378,806 - -1.0 378,806 - -0.4 378,807 + -0.6 378,807 + -0.1 378,808 - -1.4 378,808 - -0.5 378,808 - -0.8 378,816 + +1.7 378,817 - +0.2 378,819 + -0.6 378,820 - +0.3 378,880 + +0.3 378,880 + -0.4 378,880 + -0.5 378,881 - -0.2 378,881 - +0.6 378,881 - +1.2 378,886 + -3.2 378,887 - +0.2 378,887 - -0.8 378,929 - +0.0 378,942 + +0.7 378,942 + -0.5 378,942 + +3.3 378,942 + +0.5 378,942 + -0.6 378,942 + -2.0 378,942 + -0.2 378,942 + -0.5 378,942 + -0.1 378,942 + +0.7 378,942 + -0.4 378,943 - -0.4 378,943 - -0.8 378,943 - -0.4 378,943 - -0.9 378,943 - -1.2 378,943 - -0.8 378,943 - +0.2 378,943 - -0.7 378,943 - +0.3 378,943 - -0.7 378,943 - -0.0 378,943 - -1.0 378,943 - -0.1 378,943 - +0.3 378,943 - +0.0 378,944 + +0.4 378,994 + +0.4 378,995 - -0.2 378,995 - +0.2 378,995 - -0.3 379,124 - -0.8 379,124 - +0.3 379,124 - -2.2 379,124 - -0.7 379,124 - +0.2 379,124 - +0.4 379,124 - -0.5 379,124 - -0.7 379,124 - -1.2 379,562 - GFF1596 0.48 -0.7 379,900 + GFF1596 0.78 +1.2 379,900 + GFF1596 0.78 -0.5 379,901 - GFF1596 0.78 -1.1 379,901 - GFF1596 0.78 -2.0 380,065 + -0.9 380,067 + +0.5 380,281 + +0.2 380,411 + GFF1597 0.12 +0.3 380,412 - GFF1597 0.12 -1.1 380,479 + GFF1597 0.22 -0.5 380,526 - GFF1597 0.28 -0.2 380,526 - GFF1597 0.28 -0.1 380,526 - GFF1597 0.28 +0.2 380,526 - GFF1597 0.28 +0.6 380,526 - GFF1597 0.28 +0.6 380,531 + GFF1597 0.29 -1.2 380,531 + GFF1597 0.29 -0.6 380,531 + GFF1597 0.29 +0.2 380,532 - GFF1597 0.29 -1.2 380,532 - GFF1597 0.29 +0.0 380,606 + GFF1597 0.39 +0.7 380,606 + GFF1597 0.39 +0.8 380,607 - GFF1597 0.39 -0.7 380,607 - GFF1597 0.39 +0.5 380,681 + GFF1597 0.50 +0.9 380,682 - GFF1597 0.50 -0.4 380,705 + GFF1597 0.53 +0.9 380,705 + GFF1597 0.53 -1.0 380,706 - GFF1597 0.53 +0.0 380,741 + GFF1597 0.58 +0.1 380,742 - GFF1597 0.58 -0.7 380,859 + GFF1597 0.75 -0.4 380,859 + GFF1597 0.75 -0.8 380,859 + GFF1597 0.75 +0.2 380,859 + GFF1597 0.75 -0.5 380,859 + GFF1597 0.75 -0.8 380,860 - GFF1597 0.75 -1.1 380,860 - GFF1597 0.75 -1.5 380,860 - GFF1597 0.75 -0.8 380,860 - GFF1597 0.75 +0.5 380,860 - GFF1597 0.75 +0.1 380,860 - GFF1597 0.75 -0.8 380,860 - GFF1597 0.75 -0.1 380,860 - GFF1597 0.75 -0.8 380,897 + GFF1597 0.80 +0.4 380,897 + GFF1597 0.80 -0.5 380,943 - GFF1597 0.86 -0.0 380,964 - GFF1597 0.89 -0.1
Or see this region's nucleotide sequence