Strain Fitness in Pseudomonas sp. DMC3 around GFF1486

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1484 and GFF1485 are separated by 248 nucleotidesGFF1485 and GFF1486 overlap by 11 nucleotidesGFF1486 and GFF1487 are separated by 15 nucleotides GFF1484 - Translocation and assembly module subunit TamB, at 260,712 to 264,386 GFF1484 GFF1485 - Transcriptional regulator SlyA, at 264,635 to 265,117 GFF1485 GFF1486 - Toluene efflux pump outer membrane protein TtgI, at 265,107 to 266,576 GFF1486 GFF1487 - Multidrug export protein EmrA, at 266,592 to 267,794 GFF1487 Position (kb) 265 266 267Strain fitness (log2 ratio) -2 -1 0 1at 264.259 kb on - strandat 264.271 kb on + strandat 264.272 kb on - strandat 264.272 kb on - strandat 264.303 kb on + strandat 264.303 kb on + strandat 264.303 kb on + strandat 264.324 kb on + strandat 264.325 kb on - strandat 264.325 kb on - strandat 264.363 kb on - strandat 264.369 kb on + strandat 264.369 kb on + strandat 264.370 kb on - strandat 264.384 kb on + strandat 264.384 kb on + strandat 264.384 kb on + strandat 264.538 kb on + strandat 264.538 kb on + strandat 264.538 kb on + strandat 264.539 kb on - strandat 264.539 kb on - strandat 264.554 kb on + strandat 264.558 kb on + strandat 264.559 kb on - strandat 264.559 kb on - strandat 264.559 kb on - strandat 264.600 kb on + strandat 264.621 kb on + strandat 264.621 kb on + strandat 264.621 kb on + strandat 264.831 kb on + strand, within GFF1485at 265.040 kb on + strand, within GFF1485at 265.040 kb on + strand, within GFF1485at 265.041 kb on - strand, within GFF1485at 265.041 kb on - strand, within GFF1485at 265.041 kb on - strand, within GFF1485at 265.041 kb on - strand, within GFF1485at 265.095 kb on + strandat 265.095 kb on + strandat 265.095 kb on + strandat 265.095 kb on + strandat 265.096 kb on - strandat 265.096 kb on - strandat 265.096 kb on - strandat 265.115 kb on + strandat 265.180 kb on - strandat 265.503 kb on + strand, within GFF1486at 265.504 kb on - strand, within GFF1486at 265.540 kb on - strand, within GFF1486at 265.663 kb on - strand, within GFF1486at 265.663 kb on - strand, within GFF1486at 265.693 kb on - strand, within GFF1486at 265.780 kb on - strand, within GFF1486at 266.244 kb on + strand, within GFF1486at 266.244 kb on + strand, within GFF1486at 266.244 kb on + strand, within GFF1486at 266.362 kb on - strand, within GFF1486at 266.362 kb on - strand, within GFF1486at 266.362 kb on - strand, within GFF1486at 266.362 kb on - strand, within GFF1486at 266.403 kb on + strand, within GFF1486at 266.574 kb on + strandat 266.574 kb on + strandat 266.585 kb on - strandat 266.763 kb on + strand, within GFF1487at 266.763 kb on + strand, within GFF1487at 266.764 kb on - strand, within GFF1487at 266.764 kb on - strand, within GFF1487at 266.764 kb on - strand, within GFF1487at 266.764 kb on - strand, within GFF1487at 266.952 kb on + strand, within GFF1487at 266.952 kb on + strand, within GFF1487at 266.954 kb on + strand, within GFF1487at 266.954 kb on + strand, within GFF1487at 266.954 kb on + strand, within GFF1487at 266.954 kb on + strand, within GFF1487at 266.955 kb on - strand, within GFF1487at 266.955 kb on - strand, within GFF1487at 267.024 kb on + strand, within GFF1487at 267.025 kb on - strand, within GFF1487at 267.025 kb on - strand, within GFF1487at 267.025 kb on - strand, within GFF1487at 267.193 kb on + strand, within GFF1487at 267.193 kb on + strand, within GFF1487at 267.194 kb on - strand, within GFF1487at 267.194 kb on - strand, within GFF1487at 267.226 kb on - strand, within GFF1487at 267.432 kb on + strand, within GFF1487at 267.450 kb on + strand, within GFF1487at 267.450 kb on + strand, within GFF1487at 267.451 kb on - strand, within GFF1487

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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264,259 - +0.1
264,271 + -1.0
264,272 - -0.3
264,272 - +0.8
264,303 + +0.3
264,303 + -0.1
264,303 + +0.8
264,324 + +0.5
264,325 - +0.6
264,325 - -0.5
264,363 - -0.4
264,369 + +0.2
264,369 + +0.4
264,370 - -0.7
264,384 + -0.8
264,384 + +0.5
264,384 + -1.1
264,538 + -0.8
264,538 + +0.5
264,538 + -2.3
264,539 - +0.2
264,539 - -0.5
264,554 + -2.1
264,558 + -0.3
264,559 - -0.3
264,559 - -0.4
264,559 - -0.4
264,600 + -0.6
264,621 + -0.3
264,621 + -0.1
264,621 + -0.3
264,831 + GFF1485 0.41 -1.1
265,040 + GFF1485 0.84 -0.2
265,040 + GFF1485 0.84 -0.6
265,041 - GFF1485 0.84 -1.6
265,041 - GFF1485 0.84 -0.3
265,041 - GFF1485 0.84 +0.5
265,041 - GFF1485 0.84 -1.3
265,095 + -0.5
265,095 + -0.5
265,095 + +1.5
265,095 + +0.8
265,096 - -0.3
265,096 - -2.4
265,096 - -0.4
265,115 + -0.0
265,180 - -0.1
265,503 + GFF1486 0.27 +0.5
265,504 - GFF1486 0.27 +0.8
265,540 - GFF1486 0.29 +1.5
265,663 - GFF1486 0.38 +0.1
265,663 - GFF1486 0.38 -0.5
265,693 - GFF1486 0.40 +0.9
265,780 - GFF1486 0.46 +1.2
266,244 + GFF1486 0.77 -1.5
266,244 + GFF1486 0.77 +0.1
266,244 + GFF1486 0.77 -0.3
266,362 - GFF1486 0.85 +0.6
266,362 - GFF1486 0.85 +0.2
266,362 - GFF1486 0.85 +1.0
266,362 - GFF1486 0.85 +0.4
266,403 + GFF1486 0.88 +0.9
266,574 + -0.0
266,574 + -0.0
266,585 - -0.1
266,763 + GFF1487 0.14 -0.9
266,763 + GFF1487 0.14 -0.5
266,764 - GFF1487 0.14 +0.0
266,764 - GFF1487 0.14 -2.1
266,764 - GFF1487 0.14 +0.4
266,764 - GFF1487 0.14 -0.5
266,952 + GFF1487 0.30 +0.6
266,952 + GFF1487 0.30 +0.3
266,954 + GFF1487 0.30 +0.3
266,954 + GFF1487 0.30 +0.7
266,954 + GFF1487 0.30 -0.4
266,954 + GFF1487 0.30 -0.2
266,955 - GFF1487 0.30 -0.7
266,955 - GFF1487 0.30 +0.3
267,024 + GFF1487 0.36 +0.8
267,025 - GFF1487 0.36 -1.2
267,025 - GFF1487 0.36 -0.8
267,025 - GFF1487 0.36 -0.5
267,193 + GFF1487 0.50 +0.5
267,193 + GFF1487 0.50 +0.7
267,194 - GFF1487 0.50 -2.1
267,194 - GFF1487 0.50 +0.2
267,226 - GFF1487 0.53 -1.1
267,432 + GFF1487 0.70 -0.5
267,450 + GFF1487 0.71 +1.5
267,450 + GFF1487 0.71 -0.3
267,451 - GFF1487 0.71 -0.5

Or see this region's nucleotide sequence