Strain Fitness in Pseudomonas sp. DMC3 around GFF1115

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1114 and GFF1115 are separated by 28 nucleotidesGFF1115 and GFF1116 are separated by 491 nucleotides GFF1114 - Zinc-type alcohol dehydrogenase-like protein, at 455,263 to 456,237 GFF1114 GFF1115 - hypothetical protein, at 456,266 to 456,607 GFF1115 GFF1116 - hypothetical protein, at 457,099 to 457,473 GFF1116 Position (kb) 456 457Strain fitness (log2 ratio) -2 -1 0 1 2at 455.370 kb on + strand, within GFF1114at 455.370 kb on + strand, within GFF1114at 455.370 kb on + strand, within GFF1114at 455.370 kb on + strand, within GFF1114at 455.370 kb on + strand, within GFF1114at 455.370 kb on + strand, within GFF1114at 455.371 kb on - strand, within GFF1114at 455.371 kb on - strand, within GFF1114at 455.371 kb on - strand, within GFF1114at 455.521 kb on + strand, within GFF1114at 455.521 kb on + strand, within GFF1114at 455.534 kb on + strand, within GFF1114at 455.534 kb on + strand, within GFF1114at 455.535 kb on - strand, within GFF1114at 455.555 kb on - strand, within GFF1114at 455.555 kb on - strand, within GFF1114at 455.843 kb on - strand, within GFF1114at 455.857 kb on + strand, within GFF1114at 455.857 kb on + strand, within GFF1114at 455.857 kb on + strand, within GFF1114at 455.858 kb on - strand, within GFF1114at 455.858 kb on - strand, within GFF1114at 455.858 kb on - strand, within GFF1114at 455.858 kb on - strand, within GFF1114at 456.134 kb on - strand, within GFF1114at 456.134 kb on - strand, within GFF1114at 456.272 kb on + strandat 456.394 kb on + strand, within GFF1115at 456.395 kb on - strand, within GFF1115at 456.533 kb on + strand, within GFF1115at 456.598 kb on - strandat 456.613 kb on + strandat 456.613 kb on + strandat 456.613 kb on + strandat 456.614 kb on - strandat 456.614 kb on - strandat 456.614 kb on - strandat 456.677 kb on + strandat 456.678 kb on - strandat 456.736 kb on + strandat 456.736 kb on + strandat 456.737 kb on - strandat 456.746 kb on - strandat 456.746 kb on - strandat 456.746 kb on - strandat 456.827 kb on + strandat 456.827 kb on + strandat 456.873 kb on + strandat 456.873 kb on + strandat 456.924 kb on + strandat 456.924 kb on + strandat 456.924 kb on + strandat 456.924 kb on + strandat 456.924 kb on + strandat 456.925 kb on - strandat 456.935 kb on - strandat 456.987 kb on - strandat 457.141 kb on + strand, within GFF1116at 457.141 kb on + strand, within GFF1116at 457.141 kb on + strand, within GFF1116at 457.142 kb on - strand, within GFF1116at 457.142 kb on - strand, within GFF1116at 457.142 kb on - strand, within GFF1116at 457.142 kb on - strand, within GFF1116at 457.166 kb on - strand, within GFF1116at 457.166 kb on - strand, within GFF1116at 457.166 kb on - strand, within GFF1116at 457.166 kb on - strand, within GFF1116at 457.233 kb on + strand, within GFF1116at 457.233 kb on + strand, within GFF1116at 457.312 kb on + strand, within GFF1116at 457.312 kb on + strand, within GFF1116at 457.388 kb on + strand, within GFF1116at 457.389 kb on - strand, within GFF1116at 457.389 kb on - strand, within GFF1116at 457.389 kb on - strand, within GFF1116at 457.389 kb on - strand, within GFF1116at 457.399 kb on - strand, within GFF1116at 457.399 kb on - strand, within GFF1116

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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455,370 + GFF1114 0.11 +0.4
455,370 + GFF1114 0.11 +0.1
455,370 + GFF1114 0.11 +0.5
455,370 + GFF1114 0.11 -0.6
455,370 + GFF1114 0.11 +0.3
455,370 + GFF1114 0.11 -0.0
455,371 - GFF1114 0.11 +0.0
455,371 - GFF1114 0.11 +0.5
455,371 - GFF1114 0.11 -0.3
455,521 + GFF1114 0.26 -0.3
455,521 + GFF1114 0.26 -0.4
455,534 + GFF1114 0.28 -0.4
455,534 + GFF1114 0.28 +1.5
455,535 - GFF1114 0.28 -0.2
455,555 - GFF1114 0.30 +1.1
455,555 - GFF1114 0.30 -0.2
455,843 - GFF1114 0.59 -0.5
455,857 + GFF1114 0.61 -0.7
455,857 + GFF1114 0.61 -0.3
455,857 + GFF1114 0.61 +0.1
455,858 - GFF1114 0.61 +0.1
455,858 - GFF1114 0.61 +0.2
455,858 - GFF1114 0.61 +0.2
455,858 - GFF1114 0.61 +0.7
456,134 - GFF1114 0.89 +0.5
456,134 - GFF1114 0.89 -0.8
456,272 + -0.2
456,394 + GFF1115 0.37 +0.4
456,395 - GFF1115 0.38 +1.2
456,533 + GFF1115 0.78 +0.5
456,598 - -0.8
456,613 + -1.3
456,613 + -0.4
456,613 + -0.4
456,614 - -0.7
456,614 - -0.4
456,614 - +1.6
456,677 + +0.0
456,678 - -0.5
456,736 + -2.4
456,736 + +0.3
456,737 - +0.6
456,746 - -0.5
456,746 - +0.2
456,746 - +0.9
456,827 + -0.2
456,827 + +1.3
456,873 + +0.4
456,873 + +1.9
456,924 + +1.2
456,924 + -0.2
456,924 + +0.0
456,924 + +0.8
456,924 + +1.3
456,925 - +0.2
456,935 - -0.4
456,987 - -0.1
457,141 + GFF1116 0.11 +1.0
457,141 + GFF1116 0.11 +0.5
457,141 + GFF1116 0.11 -0.8
457,142 - GFF1116 0.11 -1.0
457,142 - GFF1116 0.11 +0.2
457,142 - GFF1116 0.11 -0.8
457,142 - GFF1116 0.11 -2.1
457,166 - GFF1116 0.18 -0.7
457,166 - GFF1116 0.18 +1.1
457,166 - GFF1116 0.18 +0.6
457,166 - GFF1116 0.18 -0.1
457,233 + GFF1116 0.36 +1.2
457,233 + GFF1116 0.36 -0.4
457,312 + GFF1116 0.57 -0.6
457,312 + GFF1116 0.57 -0.4
457,388 + GFF1116 0.77 -0.6
457,389 - GFF1116 0.77 -0.5
457,389 - GFF1116 0.77 +0.1
457,389 - GFF1116 0.77 -0.3
457,389 - GFF1116 0.77 -0.5
457,399 - GFF1116 0.80 -0.4
457,399 - GFF1116 0.80 +0.2

Or see this region's nucleotide sequence