Strain Fitness in Pseudomonas sp. DMC3 around GFF1104

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1103 and GFF1104 are separated by 443 nucleotidesGFF1104 and GFF1105 are separated by 6 nucleotides GFF1103 - hypothetical protein, at 446,840 to 447,247 GFF1103 GFF1104 - hypothetical protein, at 447,691 to 448,050 GFF1104 GFF1105 - hypothetical protein, at 448,057 to 449,730 GFF1105 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1 2at 446.738 kb on - strandat 446.802 kb on + strandat 446.803 kb on - strandat 446.815 kb on + strandat 446.816 kb on - strandat 446.939 kb on - strand, within GFF1103at 446.970 kb on - strand, within GFF1103at 446.970 kb on - strand, within GFF1103at 447.050 kb on + strand, within GFF1103at 447.050 kb on + strand, within GFF1103at 447.084 kb on + strand, within GFF1103at 447.084 kb on + strand, within GFF1103at 447.150 kb on + strand, within GFF1103at 447.150 kb on + strand, within GFF1103at 447.150 kb on + strand, within GFF1103at 447.150 kb on + strand, within GFF1103at 447.151 kb on - strand, within GFF1103at 447.207 kb on + strandat 447.208 kb on - strandat 447.208 kb on - strandat 447.270 kb on + strandat 447.270 kb on + strandat 447.287 kb on + strandat 447.287 kb on + strandat 447.287 kb on + strandat 447.288 kb on - strandat 447.288 kb on - strandat 447.333 kb on + strandat 447.364 kb on + strandat 447.364 kb on + strandat 447.365 kb on - strandat 447.365 kb on - strandat 447.365 kb on - strandat 447.377 kb on - strandat 447.417 kb on - strandat 447.521 kb on + strandat 447.661 kb on - strandat 447.661 kb on - strandat 447.796 kb on + strand, within GFF1104at 447.797 kb on - strand, within GFF1104at 447.797 kb on - strand, within GFF1104at 447.866 kb on - strand, within GFF1104at 447.975 kb on - strand, within GFF1104at 447.975 kb on - strand, within GFF1104at 448.013 kb on + strand, within GFF1104at 448.041 kb on - strandat 448.198 kb on + strandat 448.198 kb on + strandat 448.199 kb on - strandat 448.223 kb on - strandat 448.253 kb on + strand, within GFF1105at 448.277 kb on - strand, within GFF1105at 448.291 kb on - strand, within GFF1105at 448.320 kb on - strand, within GFF1105at 448.428 kb on + strand, within GFF1105at 448.430 kb on + strand, within GFF1105at 448.430 kb on + strand, within GFF1105at 448.430 kb on + strand, within GFF1105at 448.430 kb on + strand, within GFF1105at 448.430 kb on + strand, within GFF1105at 448.431 kb on - strand, within GFF1105at 448.431 kb on - strand, within GFF1105at 448.431 kb on - strand, within GFF1105at 448.437 kb on + strand, within GFF1105at 448.438 kb on - strand, within GFF1105at 448.438 kb on - strand, within GFF1105at 448.443 kb on + strand, within GFF1105at 448.443 kb on + strand, within GFF1105at 448.450 kb on + strand, within GFF1105at 448.450 kb on + strand, within GFF1105at 448.450 kb on + strand, within GFF1105at 448.451 kb on - strand, within GFF1105at 448.451 kb on - strand, within GFF1105at 448.470 kb on + strand, within GFF1105at 448.470 kb on + strand, within GFF1105at 448.470 kb on + strand, within GFF1105at 448.471 kb on - strand, within GFF1105at 448.474 kb on + strand, within GFF1105at 448.554 kb on + strand, within GFF1105at 448.554 kb on + strand, within GFF1105at 448.554 kb on + strand, within GFF1105at 448.558 kb on + strand, within GFF1105at 448.574 kb on + strand, within GFF1105at 448.574 kb on + strand, within GFF1105at 448.574 kb on + strand, within GFF1105at 448.574 kb on + strand, within GFF1105at 448.574 kb on + strand, within GFF1105at 448.574 kb on + strand, within GFF1105at 448.575 kb on - strand, within GFF1105at 448.575 kb on - strand, within GFF1105at 448.576 kb on + strand, within GFF1105at 448.576 kb on + strand, within GFF1105at 448.577 kb on - strand, within GFF1105at 448.577 kb on - strand, within GFF1105at 448.588 kb on - strand, within GFF1105at 448.590 kb on - strand, within GFF1105at 448.623 kb on - strand, within GFF1105at 448.623 kb on - strand, within GFF1105at 448.668 kb on - strand, within GFF1105at 448.668 kb on - strand, within GFF1105at 448.688 kb on + strand, within GFF1105at 448.699 kb on - strand, within GFF1105at 448.833 kb on - strand, within GFF1105at 448.884 kb on + strand, within GFF1105at 448.884 kb on + strand, within GFF1105at 448.885 kb on - strand, within GFF1105at 448.888 kb on + strand, within GFF1105at 448.981 kb on - strand, within GFF1105at 448.981 kb on - strand, within GFF1105at 448.982 kb on + strand, within GFF1105at 448.982 kb on + strand, within GFF1105at 448.982 kb on + strand, within GFF1105at 448.983 kb on - strand, within GFF1105at 448.983 kb on - strand, within GFF1105at 448.983 kb on - strand, within GFF1105at 449.017 kb on + strand, within GFF1105at 449.033 kb on + strand, within GFF1105at 449.033 kb on + strand, within GFF1105at 449.034 kb on - strand, within GFF1105

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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446,738 - -0.9
446,802 + -0.4
446,803 - -0.5
446,815 + +1.9
446,816 - +0.5
446,939 - GFF1103 0.24 +0.6
446,970 - GFF1103 0.32 -0.8
446,970 - GFF1103 0.32 -0.3
447,050 + GFF1103 0.51 -0.0
447,050 + GFF1103 0.51 +2.6
447,084 + GFF1103 0.60 -0.3
447,084 + GFF1103 0.60 +1.0
447,150 + GFF1103 0.76 -1.0
447,150 + GFF1103 0.76 +0.3
447,150 + GFF1103 0.76 +0.3
447,150 + GFF1103 0.76 +1.2
447,151 - GFF1103 0.76 +0.1
447,207 + +0.0
447,208 - -0.7
447,208 - +1.2
447,270 + -0.2
447,270 + +0.6
447,287 + +0.1
447,287 + +0.6
447,287 + +1.5
447,288 - -0.3
447,288 - +0.8
447,333 + -0.6
447,364 + -0.1
447,364 + +0.2
447,365 - -0.4
447,365 - -0.0
447,365 - -0.2
447,377 - +0.0
447,417 - -0.2
447,521 + -0.8
447,661 - -1.0
447,661 - +0.4
447,796 + GFF1104 0.29 +2.0
447,797 - GFF1104 0.29 -0.9
447,797 - GFF1104 0.29 -0.1
447,866 - GFF1104 0.49 -1.1
447,975 - GFF1104 0.79 +1.2
447,975 - GFF1104 0.79 -0.0
448,013 + GFF1104 0.89 +0.6
448,041 - -0.6
448,198 + -0.1
448,198 + -0.6
448,199 - +0.2
448,223 - +0.3
448,253 + GFF1105 0.12 +0.1
448,277 - GFF1105 0.13 +0.4
448,291 - GFF1105 0.14 +0.1
448,320 - GFF1105 0.16 +2.4
448,428 + GFF1105 0.22 -1.3
448,430 + GFF1105 0.22 +0.2
448,430 + GFF1105 0.22 -0.1
448,430 + GFF1105 0.22 -0.0
448,430 + GFF1105 0.22 -0.1
448,430 + GFF1105 0.22 +0.3
448,431 - GFF1105 0.22 +0.1
448,431 - GFF1105 0.22 +0.3
448,431 - GFF1105 0.22 -0.8
448,437 + GFF1105 0.23 -0.1
448,438 - GFF1105 0.23 +0.5
448,438 - GFF1105 0.23 +1.1
448,443 + GFF1105 0.23 -0.2
448,443 + GFF1105 0.23 -0.1
448,450 + GFF1105 0.23 -0.8
448,450 + GFF1105 0.23 +0.3
448,450 + GFF1105 0.23 -0.5
448,451 - GFF1105 0.24 +0.4
448,451 - GFF1105 0.24 -1.3
448,470 + GFF1105 0.25 +0.9
448,470 + GFF1105 0.25 +0.1
448,470 + GFF1105 0.25 +1.2
448,471 - GFF1105 0.25 -0.5
448,474 + GFF1105 0.25 -1.2
448,554 + GFF1105 0.30 +0.5
448,554 + GFF1105 0.30 -0.0
448,554 + GFF1105 0.30 -0.2
448,558 + GFF1105 0.30 +0.6
448,574 + GFF1105 0.31 -0.7
448,574 + GFF1105 0.31 +0.5
448,574 + GFF1105 0.31 +0.5
448,574 + GFF1105 0.31 +0.6
448,574 + GFF1105 0.31 +0.0
448,574 + GFF1105 0.31 -0.2
448,575 - GFF1105 0.31 -1.3
448,575 - GFF1105 0.31 -0.5
448,576 + GFF1105 0.31 -1.3
448,576 + GFF1105 0.31 +0.2
448,577 - GFF1105 0.31 -0.5
448,577 - GFF1105 0.31 -0.3
448,588 - GFF1105 0.32 +0.2
448,590 - GFF1105 0.32 -0.8
448,623 - GFF1105 0.34 +0.6
448,623 - GFF1105 0.34 -2.2
448,668 - GFF1105 0.36 +0.2
448,668 - GFF1105 0.36 -0.5
448,688 + GFF1105 0.38 -0.1
448,699 - GFF1105 0.38 +1.0
448,833 - GFF1105 0.46 -0.1
448,884 + GFF1105 0.49 -1.0
448,884 + GFF1105 0.49 +0.3
448,885 - GFF1105 0.49 +0.1
448,888 + GFF1105 0.50 +0.5
448,981 - GFF1105 0.55 -1.3
448,981 - GFF1105 0.55 +0.4
448,982 + GFF1105 0.55 +0.1
448,982 + GFF1105 0.55 +0.5
448,982 + GFF1105 0.55 -0.8
448,983 - GFF1105 0.55 +0.2
448,983 - GFF1105 0.55 +0.0
448,983 - GFF1105 0.55 +0.3
449,017 + GFF1105 0.57 -1.1
449,033 + GFF1105 0.58 +0.2
449,033 + GFF1105 0.58 -1.2
449,034 - GFF1105 0.58 -0.6

Or see this region's nucleotide sequence