Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1059 and GFF1060 are separated by 148 nucleotides GFF1060 and GFF1061 are separated by 161 nucleotides GFF1061 and GFF1062 overlap by 4 nucleotides
GFF1059 - Aldehyde reductase YahK, at 401,646 to 402,695
GFF1059
GFF1060 - hypothetical protein, at 402,844 to 403,071
GFF1060
GFF1061 - hypothetical protein, at 403,233 to 403,445
GFF1061
GFF1062 - D-amino acid dehydrogenase 1, at 403,442 to 404,695
GFF1062
Position (kb) 403
404 Strain fitness (log2 ratio) -1
0
1 at 402.280 kb on + strand, within GFF1059 at 402.280 kb on + strand, within GFF1059 at 402.281 kb on - strand, within GFF1059 at 402.281 kb on - strand, within GFF1059 at 402.281 kb on - strand, within GFF1059 at 402.281 kb on - strand, within GFF1059 at 402.355 kb on + strand, within GFF1059 at 402.356 kb on - strand, within GFF1059 at 402.356 kb on - strand, within GFF1059 at 402.463 kb on + strand, within GFF1059 at 402.536 kb on + strand, within GFF1059 at 402.606 kb on + strand at 402.607 kb on - strand at 402.687 kb on + strand at 402.687 kb on + strand at 402.688 kb on - strand at 402.688 kb on - strand at 402.688 kb on - strand at 402.895 kb on + strand, within GFF1060 at 402.895 kb on + strand, within GFF1060 at 403.205 kb on + strand at 403.206 kb on - strand at 403.377 kb on + strand, within GFF1061 at 403.377 kb on + strand, within GFF1061 at 403.444 kb on - strand at 403.547 kb on + strand at 403.547 kb on + strand at 403.548 kb on - strand at 403.548 kb on - strand at 403.887 kb on - strand, within GFF1062 at 404.008 kb on - strand, within GFF1062 at 404.440 kb on - strand, within GFF1062 at 404.440 kb on - strand, within GFF1062
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 402,280 + GFF1059 0.60 -1.0 402,280 + GFF1059 0.60 +0.1 402,281 - GFF1059 0.60 +0.9 402,281 - GFF1059 0.60 +0.1 402,281 - GFF1059 0.60 +1.5 402,281 - GFF1059 0.60 -0.6 402,355 + GFF1059 0.68 +0.9 402,356 - GFF1059 0.68 +0.7 402,356 - GFF1059 0.68 -1.2 402,463 + GFF1059 0.78 +0.1 402,536 + GFF1059 0.85 -0.1 402,606 + -1.0 402,607 - -0.8 402,687 + -0.5 402,687 + -0.5 402,688 - +0.6 402,688 - -0.8 402,688 - -0.1 402,895 + GFF1060 0.22 +0.1 402,895 + GFF1060 0.22 -0.8 403,205 + +1.3 403,206 - -0.4 403,377 + GFF1061 0.68 +1.2 403,377 + GFF1061 0.68 +0.6 403,444 - -0.1 403,547 + +1.5 403,547 + -1.1 403,548 - -0.3 403,548 - -0.1 403,887 - GFF1062 0.35 -0.0 404,008 - GFF1062 0.45 +0.4 404,440 - GFF1062 0.80 -0.4 404,440 - GFF1062 0.80 +1.0
Or see this region's nucleotide sequence