Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1000 and GFF1001 are separated by 109 nucleotides GFF1001 and GFF1002 overlap by 19 nucleotides GFF1002 and GFF1003 are separated by 161 nucleotides GFF1003 and GFF1004 are separated by 194 nucleotides
GFF1000 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 338,781 to 339,863
GFF1000
GFF1001 - hypothetical protein, at 339,973 to 340,404
GFF1001
GFF1002 - Putative glutamate--cysteine ligase 2, at 340,386 to 341,504
GFF1002
GFF1003 - hypothetical protein, at 341,666 to 341,941
GFF1003
GFF1004 - hypothetical protein, at 342,136 to 342,741
GFF1004
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 339.790 kb on + strand at 339.791 kb on - strand at 339.791 kb on - strand at 339.855 kb on + strand at 339.855 kb on + strand at 339.855 kb on + strand at 339.856 kb on - strand at 339.875 kb on - strand at 340.005 kb on + strand at 340.048 kb on + strand, within GFF1001 at 340.315 kb on + strand, within GFF1001 at 340.551 kb on + strand, within GFF1002 at 340.811 kb on + strand, within GFF1002 at 340.811 kb on + strand, within GFF1002 at 340.812 kb on - strand, within GFF1002 at 340.812 kb on - strand, within GFF1002 at 340.812 kb on - strand, within GFF1002 at 340.812 kb on - strand, within GFF1002 at 341.176 kb on + strand, within GFF1002 at 341.176 kb on + strand, within GFF1002 at 341.177 kb on - strand, within GFF1002 at 341.470 kb on + strand at 341.471 kb on - strand at 341.522 kb on + strand at 341.522 kb on + strand at 341.522 kb on + strand at 341.522 kb on + strand at 341.523 kb on - strand at 342.012 kb on + strand at 342.013 kb on - strand at 342.013 kb on - strand at 342.013 kb on - strand at 342.133 kb on + strand at 342.133 kb on + strand at 342.133 kb on + strand at 342.133 kb on + strand at 342.134 kb on - strand at 342.134 kb on - strand at 342.134 kb on - strand at 342.134 kb on - strand at 342.134 kb on - strand at 342.134 kb on - strand at 342.134 kb on - strand at 342.134 kb on - strand at 342.134 kb on - strand at 342.160 kb on + strand at 342.160 kb on + strand at 342.160 kb on + strand at 342.160 kb on + strand at 342.286 kb on + strand, within GFF1004 at 342.286 kb on + strand, within GFF1004 at 342.286 kb on + strand, within GFF1004 at 342.286 kb on + strand, within GFF1004 at 342.287 kb on - strand, within GFF1004 at 342.287 kb on - strand, within GFF1004 at 342.287 kb on - strand, within GFF1004 at 342.290 kb on - strand, within GFF1004 at 342.298 kb on + strand, within GFF1004 at 342.298 kb on + strand, within GFF1004 at 342.298 kb on + strand, within GFF1004 at 342.299 kb on - strand, within GFF1004 at 342.299 kb on - strand, within GFF1004 at 342.299 kb on - strand, within GFF1004 at 342.484 kb on + strand, within GFF1004 at 342.484 kb on + strand, within GFF1004 at 342.484 kb on + strand, within GFF1004 at 342.485 kb on - strand, within GFF1004 at 342.485 kb on - strand, within GFF1004
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 339,790 + -0.9 339,791 - -0.3 339,791 - -0.3 339,855 + -0.4 339,855 + -0.3 339,855 + +0.2 339,856 - +0.2 339,875 - +0.5 340,005 + -0.1 340,048 + GFF1001 0.17 -0.7 340,315 + GFF1001 0.79 +0.6 340,551 + GFF1002 0.15 -0.5 340,811 + GFF1002 0.38 +1.7 340,811 + GFF1002 0.38 -0.3 340,812 - GFF1002 0.38 +0.9 340,812 - GFF1002 0.38 +1.1 340,812 - GFF1002 0.38 -0.1 340,812 - GFF1002 0.38 +1.8 341,176 + GFF1002 0.71 +0.6 341,176 + GFF1002 0.71 +0.3 341,177 - GFF1002 0.71 -0.6 341,470 + +0.1 341,471 - +0.2 341,522 + -1.8 341,522 + +0.9 341,522 + +0.5 341,522 + -0.9 341,523 - +0.1 342,012 + -1.1 342,013 - -0.4 342,013 - +1.8 342,013 - -0.1 342,133 + -1.4 342,133 + -0.0 342,133 + +0.5 342,133 + -0.1 342,134 - -0.4 342,134 - -1.5 342,134 - +0.2 342,134 - -0.5 342,134 - +1.4 342,134 - -0.9 342,134 - +0.8 342,134 - -1.4 342,134 - -1.8 342,160 + -0.5 342,160 + -0.4 342,160 + -1.4 342,160 + -0.7 342,286 + GFF1004 0.25 -2.1 342,286 + GFF1004 0.25 -0.0 342,286 + GFF1004 0.25 +0.1 342,286 + GFF1004 0.25 -1.0 342,287 - GFF1004 0.25 -0.1 342,287 - GFF1004 0.25 +0.8 342,287 - GFF1004 0.25 +0.6 342,290 - GFF1004 0.25 -0.7 342,298 + GFF1004 0.27 -0.6 342,298 + GFF1004 0.27 +0.3 342,298 + GFF1004 0.27 +0.2 342,299 - GFF1004 0.27 +0.2 342,299 - GFF1004 0.27 -0.5 342,299 - GFF1004 0.27 +0.0 342,484 + GFF1004 0.57 -0.9 342,484 + GFF1004 0.57 -0.1 342,484 + GFF1004 0.57 -1.1 342,485 - GFF1004 0.58 +0.8 342,485 - GFF1004 0.58 -0.6
Or see this region's nucleotide sequence