Strain Fitness in Sphingobium sp. HT1-2 around GFF99

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
87,782	+		GFF98	0.30	+0.2
87,803	+		GFF98	0.32	-0.8
87,813	+		GFF98	0.33	-2.0
87,813	+		GFF98	0.33	-0.0
87,813	+		GFF98	0.33	+0.4
87,813	+		GFF98	0.33	-0.0
87,821	-		GFF98	0.33	-1.1
87,821	-		GFF98	0.33	-1.9
87,832	-		GFF98	0.34	-0.8
87,848	+		GFF98	0.35	-0.6
87,856	+		GFF98	0.36	-0.9
87,872	+		GFF98	0.37	-1.8
87,883	+		GFF98	0.38	-0.4
87,883	+		GFF98	0.38	-0.8
87,883	+		GFF98	0.38	-0.2
87,883	+		GFF98	0.38	-0.6
87,883	+		GFF98	0.38	-1.9
87,891	-		GFF98	0.38	+0.4
87,891	-		GFF98	0.38	+1.1
87,891	-		GFF98	0.38	-0.0
87,901	+		GFF98	0.39	-1.2
87,904	-		GFF98	0.39	-0.5
87,926	-		GFF98	0.41	-0.5
87,928	-		GFF98	0.41	+1.7
87,933	-		GFF98	0.41	-0.1
87,939	-		GFF98	0.42	+0.6
87,953	-		GFF98	0.43	-0.5
87,967	+		GFF98	0.44	+1.5
87,967	+		GFF98	0.44	-0.0
87,967	+		GFF98	0.44	-0.8
87,972	+		GFF98	0.44	-1.8
87,973	+		GFF98	0.44	-0.2
87,975	-		GFF98	0.44	-1.2
88,029	+		GFF98	0.48	-0.3
88,034	+		GFF98	0.48	-0.1
88,037	-		GFF98	0.49	-0.6
88,056	+		GFF98	0.50	-0.5
88,056	+		GFF98	0.50	-1.0
88,056	+		GFF98	0.50	+1.0
88,056	+		GFF98	0.50	-0.4
88,056	+		GFF98	0.50	-0.2
88,064	-		GFF98	0.51	-1.9
88,064	-		GFF98	0.51	+0.2
88,064	-		GFF98	0.51	-0.6
88,064	-		GFF98	0.51	-1.9
88,064	-		GFF98	0.51	-0.7
88,064	-		GFF98	0.51	-0.5
88,064	-		GFF98	0.51	-0.2
88,064	-		GFF98	0.51	+0.5
88,126	+		GFF98	0.55	+0.5
88,140	-		GFF98	0.56	-0.9
88,142	+		GFF98	0.56	-0.0
88,147	+		GFF98	0.57	+0.2
88,147	+		GFF98	0.57	+1.1
88,147	+		GFF98	0.57	-0.4
88,147	+		GFF98	0.57	-1.0
88,152	+		GFF98	0.57	-0.8
88,152	+		GFF98	0.57	+0.0
88,152	+		GFF98	0.57	-0.6
88,152	+		GFF98	0.57	-0.8
88,155	-		GFF98	0.57	-2.0
88,155	-		GFF98	0.57	+0.3
88,156	-		GFF98	0.57	+0.1
88,160	-		GFF98	0.58	-1.0
88,160	-		GFF98	0.58	-1.6
88,185	-		GFF98	0.59	-0.1
88,193	+		GFF98	0.60	-0.2
88,193	+		GFF98	0.60	+0.5
88,201	-		GFF98	0.60	-1.6
88,208	-		GFF98	0.61	-0.0
88,208	-		GFF98	0.61	+0.5
88,222	+		GFF98	0.62	-0.4
88,240	-		GFF98	0.63	-0.1
88,240	-		GFF98	0.63	-2.0
88,242	+		GFF98	0.63	-1.0
88,242	+		GFF98	0.63	+0.8
88,242	+		GFF98	0.63	-1.8
88,242	+		GFF98	0.63	-0.1
88,247	+		GFF98	0.64	-2.2
88,250	-		GFF98	0.64	+0.4
88,250	-		GFF98	0.64	-1.7
88,261	+		GFF98	0.65	-1.6
88,263	+		GFF98	0.65	-0.2
88,279	+		GFF98	0.66	-1.2
88,281	-		GFF98	0.66	-1.4
88,287	-		GFF98	0.67	-2.0
88,328	+		GFF98	0.70	-0.8
88,328	+		GFF98	0.70	-2.2
88,336	-		GFF98	0.70	-0.4
88,336	-		GFF98	0.70	-1.4
88,341	-		GFF98	0.71	-0.2
88,343	-		GFF98	0.71	-1.5
88,351	+		GFF98	0.71	-1.8
88,367	-		GFF98	0.72	-0.4
88,367	-		GFF98	0.72	-1.5
88,374	+		GFF98	0.73	-0.7
88,379	+		GFF98	0.73	-0.2
88,414	-		GFF98	0.76	-0.4
88,424	+		GFF98	0.77	+0.6
88,432	-		GFF98	0.77	-0.9
88,441	+		GFF98	0.78	-1.9
88,473	+		GFF98	0.80	-0.1
88,476	+		GFF98	0.80	+0.6
88,478	+		GFF98	0.80	+1.1
88,478	+		GFF98	0.80	-0.5
88,484	-		GFF98	0.81	-0.5
88,486	+		GFF98	0.81	+0.7
88,486	+		GFF98	0.81	+0.7
88,486	+		GFF98	0.81	-0.6
88,486	-		GFF98	0.81	+0.6
88,486	-		GFF98	0.81	+0.4
88,492	-		GFF98	0.81	-1.0
88,493	+		GFF98	0.81	-1.5
88,493	+		GFF98	0.81	-0.3
88,493	+		GFF98	0.81	-1.2
88,494	-		GFF98	0.82	+0.8
88,494	-		GFF98	0.82	+0.5
88,501	-		GFF98	0.82	-0.2
88,501	-		GFF98	0.82	-0.6
88,501	-		GFF98	0.82	-1.7
88,501	-		GFF98	0.82	-1.0
88,501	-		GFF98	0.82	+1.0
88,503	+		GFF98	0.82	+0.1
88,524	+		GFF98	0.84	-0.1
88,547	+		GFF98	0.85	-0.6
88,547	+		GFF98	0.85	-1.0
88,547	+		GFF98	0.85	+0.3
88,547	+		GFF98	0.85	-0.7
88,561	+		GFF98	0.86	-0.1
88,561	+		GFF98	0.86	-0.2
88,561	+		GFF98	0.86	+0.4
88,561	+		GFF98	0.86	-1.1
88,561	+		GFF98	0.86	-0.3
88,561	-		GFF98	0.86	-1.4
88,569	-		GFF98	0.87	+1.0
88,569	-		GFF98	0.87	+1.1
88,569	-		GFF98	0.87	-1.0
88,586	-		GFF98	0.88	-2.0
88,592	+		GFF98	0.89	-1.8
88,598	+		GFF98	0.89	+0.2
88,600	-		GFF98	0.89	-2.2
88,638	-				-2.0
88,642	+				-1.5
88,656	+				+0.4
88,663	+				-0.5
88,693	-				-2.2
88,771	-				-1.3
88,788	+				-0.3
88,834	-				-0.9
88,835	-				+1.9
88,857	+				-0.1
88,868	+		GFF99	0.10	+0.9
88,873	+		GFF99	0.10	+0.0
88,945	-		GFF99	0.16	+0.9
89,018	-		GFF99	0.22	-1.5
89,062	+		GFF99	0.26	-1.4
89,085	+		GFF99	0.28	-0.8
89,085	+		GFF99	0.28	-1.7
89,106	-		GFF99	0.30	-2.0
89,106	-		GFF99	0.30	+1.6
89,108	+		GFF99	0.30	+0.6
89,110	+		GFF99	0.30	-0.9
89,116	-		GFF99	0.31	-0.4
89,118	+		GFF99	0.31	-1.9
89,118	+		GFF99	0.31	+0.8
89,118	+		GFF99	0.31	+1.8
89,121	-		GFF99	0.31	-0.8
89,123	+		GFF99	0.31	-0.9
89,123	+		GFF99	0.31	+0.5
89,123	+		GFF99	0.31	+0.4
89,123	+		GFF99	0.31	-0.8
89,123	+		GFF99	0.31	-0.2
89,123	+		GFF99	0.31	+0.5
89,126	-		GFF99	0.31	+0.2
89,126	-		GFF99	0.31	-0.7
89,126	-		GFF99	0.31	-1.2
89,126	-		GFF99	0.31	-1.4
89,126	-		GFF99	0.31	-1.3
89,128	+		GFF99	0.32	+1.1
89,131	-		GFF99	0.32	-0.1
89,131	-		GFF99	0.32	-2.5
89,131	-		GFF99	0.32	+0.0
89,131	-		GFF99	0.32	-0.3
89,131	-		GFF99	0.32	-2.6
89,189	-		GFF99	0.37	+1.5
89,189	-		GFF99	0.37	-1.2
89,190	+		GFF99	0.37	+0.4
89,200	+		GFF99	0.38	-1.8
89,203	+		GFF99	0.38	-0.6
89,211	-		GFF99	0.38	-1.0
89,272	-		GFF99	0.44	-1.3
89,272	-		GFF99	0.44	+0.5
89,277	+		GFF99	0.44	-1.0
89,292	+		GFF99	0.45	-0.0
89,322	+		GFF99	0.48	+0.2
89,338	+		GFF99	0.49	-0.0
89,338	+		GFF99	0.49	+0.7
89,370	+		GFF99	0.52	+0.8
89,370	+		GFF99	0.52	-0.1
89,370	+		GFF99	0.52	-0.5
89,370	+		GFF99	0.52	-0.5
89,370	+		GFF99	0.52	-1.9
89,370	+		GFF99	0.52	+0.2
89,378	+		GFF99	0.52	-2.0
89,378	+		GFF99	0.52	+0.6
89,378	-		GFF99	0.52	-0.3
89,378	-		GFF99	0.52	-0.2
89,378	-		GFF99	0.52	-0.2
89,378	-		GFF99	0.52	+0.8
89,378	-		GFF99	0.52	+0.6
89,378	-		GFF99	0.52	-2.3
89,378	-		GFF99	0.52	+0.1
89,378	-		GFF99	0.52	-0.8
89,386	-		GFF99	0.53	-1.0
89,386	-		GFF99	0.53	-1.5
89,386	-		GFF99	0.53	-1.2
89,395	+		GFF99	0.54	+1.5
89,403	+		GFF99	0.54	+0.3
89,438	+		GFF99	0.57	+1.1
89,453	-		GFF99	0.59	-0.2
89,471	-		GFF99	0.60	-1.0
89,480	+		GFF99	0.61	+1.2
89,485	+		GFF99	0.61	-0.6
89,485	+		GFF99	0.61	-0.4
89,490	+		GFF99	0.62	-1.4
89,490	+		GFF99	0.62	-1.5
89,490	+		GFF99	0.62	-0.5
89,490	+		GFF99	0.62	-0.0
89,490	+		GFF99	0.62	-2.2
89,490	+		GFF99	0.62	-0.4
89,495	+		GFF99	0.62	-2.3
89,498	-		GFF99	0.62	-1.0
89,498	-		GFF99	0.62	-1.3
89,498	-		GFF99	0.62	-0.4
89,498	-		GFF99	0.62	-1.6
89,508	-		GFF99	0.63	-0.1
89,508	-		GFF99	0.63	+1.2
89,508	-		GFF99	0.63	-0.8
89,522	-		GFF99	0.64	-0.1
89,538	-		GFF99	0.66	-1.2
89,539	-		GFF99	0.66	-0.4
89,541	+		GFF99	0.66	-0.3
89,541	+		GFF99	0.66	-1.2
89,558	+		GFF99	0.67	-1.7
89,558	+		GFF99	0.67	+1.3
89,558	+		GFF99	0.67	-1.2
89,559	-		GFF99	0.67	-1.3
89,566	-		GFF99	0.68	-1.2
89,576	+		GFF99	0.69	-1.1
89,576	+		GFF99	0.69	-1.6
89,594	+		GFF99	0.70	+0.2
89,594	+		GFF99	0.70	-0.1
89,602	-		GFF99	0.71	-0.2
89,615	+		GFF99	0.72	-0.5
89,623	-		GFF99	0.73	+0.3
89,710	+		GFF99	0.80	-0.6
89,710	+		GFF99	0.80	-0.7
89,731	+		GFF99	0.82	-1.4
89,750	+		GFF99	0.83	-0.1
89,750	+		GFF99	0.83	-0.9
89,758	-		GFF99	0.84	-1.1
89,777	+		GFF99	0.85	+1.5
89,795	-		GFF99	0.87	-1.8
89,795	-		GFF99	0.87	+0.8
89,802	-		GFF99	0.87	-0.3
89,820	-		GFF99	0.89	+0.9
89,829	-		GFF99	0.90	+0.2
89,859	-				-0.2
89,861	-				-0.6
89,872	+				-0.8
89,872	+				+0.5
89,872	+				-1.4
89,872	+				-1.1
89,880	-				+0.4
89,880	-				+0.1
89,891	-				+0.4
89,909	+				+0.9
89,909	+				-0.3
89,909	+				-1.6
89,917	-				+0.0
89,917	-				-1.2
89,918	+				-0.4
89,926	-				-1.6
89,968	+				-1.6
89,968	+				-1.6
89,968	+				-1.3
89,968	+				+0.0
89,975	+				-2.3
89,975	-				+0.1
89,976	-				-0.2
89,976	-				+0.2
89,977	+				-2.1
89,977	+				-1.2
89,977	+				-0.4
89,977	+				-0.1
89,977	+				+0.1
89,985	-				+0.5
89,985	-				+0.2
89,985	-				-0.9
89,985	-				-0.4
89,985	-				-1.0
90,045	-				-2.6
90,045	-				-0.3
90,046	-				-1.7
90,049	-				+0.2
90,066	-				+0.5
90,083	-				-0.4
90,092	+				-2.0
90,094	+				-1.3
90,100	+				+1.0
90,100	-				+0.0
90,101	-				+1.2
90,113	+				-0.2
90,123	-				+0.6