Strain Fitness in Sphingobium sp. HT1-2 around GFF940

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
934,097	+		GFF938	0.31	+0.3
934,100	-		GFF938	0.32	-0.2
934,105	+		GFF938	0.33	-0.7
934,105	-		GFF938	0.33	+0.4
934,113	+		GFF938	0.35	-0.2
934,113	+		GFF938	0.35	-2.0
934,113	+		GFF938	0.35	+0.3
934,121	-		GFF938	0.37	-1.1
934,121	-		GFF938	0.37	-1.1
934,126	+		GFF938	0.38	-0.7
934,126	-		GFF938	0.38	-0.7
934,134	-		GFF938	0.40	-1.3
934,134	-		GFF938	0.40	-2.1
934,134	-		GFF938	0.40	+0.6
934,163	+		GFF938	0.48	-0.4
934,171	-		GFF938	0.50	-3.5
934,171	-		GFF938	0.50	-0.2
934,171	-		GFF938	0.50	+0.0
934,181	-		GFF938	0.52	-0.9
934,181	-		GFF938	0.52	-0.9
934,192	+		GFF938	0.55	-0.0
934,197	+		GFF938	0.56	-2.8
934,197	+		GFF938	0.56	-0.7
934,202	+		GFF938	0.57	-0.4
934,224	-		GFF938	0.63	-1.0
934,237	-		GFF938	0.66	-2.6
934,264	-		GFF938	0.73	-1.1
934,280	-		GFF938	0.77	+0.6
934,351	+				-0.7
934,369	+				+0.4
934,369	+				+0.4
934,369	+				-0.2
934,377	-				+0.1
934,441	-				-0.8
934,448	+				-0.3
934,448	+				-0.1
934,456	+				+0.4
934,456	-				-1.5
934,456	-				-1.1
934,461	+				-2.3
934,461	+				-0.6
934,461	+				-1.2
934,464	-				-0.7
934,469	-				+0.9
934,469	-				-0.3
934,475	+				-1.0
934,483	-				-0.2
934,485	+				-0.2
934,510	-				-1.5
934,514	+				-1.7
934,524	+				-0.9
934,537	-				-0.2
934,542	+				-1.1
934,542	+				+0.4
934,542	+				-1.2
934,550	-				-1.0
934,552	-				-0.7
934,574	-				-0.8
934,606	+				-0.8
934,613	+				+1.3
934,624	+				+0.4
934,624	+				-1.4
934,624	+				-0.3
934,624	+				+0.2
934,624	+				-0.3
934,640	+				-1.2
934,640	+				+1.0
934,664	+				+0.9
934,664	+				-0.7
934,671	+				-1.0
934,671	+				-0.2
934,679	-		GFF939	0.12	-0.2
934,679	-		GFF939	0.12	-0.2
934,679	-		GFF939	0.12	+1.0
934,691	+		GFF939	0.16	+0.5
934,691	+		GFF939	0.16	-0.2
934,691	+		GFF939	0.16	+1.3
934,691	+		GFF939	0.16	+0.4
934,691	+		GFF939	0.16	-0.6
934,699	-		GFF939	0.19	+0.5
934,699	-		GFF939	0.19	-1.2
934,699	-		GFF939	0.19	-1.7
934,713	+		GFF939	0.24	-0.3
934,718	+		GFF939	0.26	-0.2
934,718	-		GFF939	0.26	-0.7
934,723	+		GFF939	0.27	-0.8
934,724	+		GFF939	0.28	-0.4
934,726	-		GFF939	0.28	+0.6
934,731	-		GFF939	0.30	-0.1
934,734	+		GFF939	0.31	-1.1
934,743	-		GFF939	0.34	-1.1
934,743	-		GFF939	0.34	-1.3
934,749	+		GFF939	0.36	-0.9
934,773	+		GFF939	0.44	-1.3
934,781	-		GFF939	0.47	+0.6
934,786	-		GFF939	0.48	-0.7
934,791	+		GFF939	0.50	-0.3
934,808	+		GFF939	0.56	-0.3
934,808	+		GFF939	0.56	+0.9
934,808	+		GFF939	0.56	-0.2
934,812	+		GFF939	0.57	-0.2
934,816	-		GFF939	0.59	-0.1
934,816	-		GFF939	0.59	-0.8
934,820	-		GFF939	0.60	-0.8
934,826	+		GFF939	0.62	-1.0
934,830	+		GFF939	0.63	-0.7
934,830	+		GFF939	0.63	-2.1
934,830	+		GFF939	0.63	-1.2
934,830	+		GFF939	0.63	+0.3
934,834	-		GFF939	0.65	+0.0
934,836	-		GFF939	0.65	-1.6
934,838	-		GFF939	0.66	-1.7
934,838	-		GFF939	0.66	-0.3
934,838	-		GFF939	0.66	-0.1
934,838	-		GFF939	0.66	-1.4
934,838	-		GFF939	0.66	-1.7
934,838	-		GFF939	0.66	+0.8
934,838	-		GFF939	0.66	-2.3
934,847	-		GFF939	0.69	+0.2
934,849	+		GFF939	0.70	-0.8
934,850	-		GFF939	0.70	-0.7
934,858	-		GFF939	0.73	-0.3
934,869	-		GFF939	0.76	-0.6
934,880	+		GFF939	0.80	-0.3
934,882	+		GFF939	0.81	-0.7
934,883	-		GFF939	0.81	-0.8
934,888	-		GFF939	0.83	-1.6
934,905	+		GFF939	0.89	+1.0
934,919	+				+0.8
934,927	+				+0.3
934,927	+				-0.4
934,935	+				-1.1
934,940	+				+1.3
934,940	+				+0.9
934,945	+				-0.7
934,945	+				-0.4
934,945	+				-0.7
934,945	+				-1.0
934,945	+				-0.6
934,945	+				-1.2
934,945	+				+0.6
934,945	+				-0.4
934,948	-				-1.7
934,950	+				-0.2
934,950	+				-3.2
934,950	+				-0.6
934,950	+				-0.9
934,950	+				-0.3
934,950	+				-1.1
934,950	+				-1.8
934,953	-				-0.4
934,953	-				-1.2
934,953	-				-1.3
934,953	-				-1.6
934,958	-				+0.6
934,958	-				-1.5
934,958	-				-0.5
934,958	-				-0.1
934,958	-				-0.2
934,958	-				+0.4
934,958	-				+0.0
934,965	+				+0.9
934,965	+				-0.7
934,965	+				-1.3
934,965	+				+0.5
934,965	+				-0.6
934,965	+				-1.3
934,965	+				-0.2
934,965	+				-0.1
934,965	+				-1.4
934,965	+				-1.6
934,970	+				-0.5
934,970	+				-0.2
934,973	-				+0.6
934,973	-				-1.1
934,973	-				+0.8
934,973	-				-2.1
934,973	-				-1.3
934,975	+				-0.5
934,978	-				-1.5
934,978	-				-1.3
934,978	-				-1.8
934,978	-				+0.1
934,978	-				-0.1
934,978	-				-2.0
934,993	+				-1.5
934,999	+				-0.3
934,999	+				-0.2
934,999	+				+0.7
934,999	+				-0.2
934,999	+				-0.9
934,999	+				-0.2
935,001	-				-0.2
935,007	-				-0.9
935,007	-				-0.6
935,007	-				-1.4
935,007	-				-2.1
935,008	-				+0.9
935,015	-				+1.3
935,059	+				-0.3
935,075	+				+0.0
935,102	-				-1.6
935,140	+				-1.6
935,148	+				+0.5
935,148	+				-0.8
935,148	+				-0.1
935,148	+				+0.4
935,148	+				-0.1
935,148	+				-0.2
935,154	+				-0.8
935,156	-		GFF940	0.10	-0.6
935,156	-		GFF940	0.10	-0.7
935,180	-		GFF940	0.14	+0.3
935,185	+		GFF940	0.14	-0.9
935,186	+		GFF940	0.15	-0.3
935,194	-		GFF940	0.16	-1.6
935,205	-		GFF940	0.17	+1.4
935,217	-		GFF940	0.19	-1.3
935,223	+		GFF940	0.20	+0.3
935,253	-		GFF940	0.25	-0.2
935,253	-		GFF940	0.25	-0.0
935,271	-		GFF940	0.27	-0.2
935,281	+		GFF940	0.29	+0.2
935,281	+		GFF940	0.29	-1.1
935,289	+		GFF940	0.30	-0.2
935,297	-		GFF940	0.31	+0.3
935,297	-		GFF940	0.31	+0.7
935,297	-		GFF940	0.31	-0.8
935,297	-		GFF940	0.31	-0.5
935,308	+		GFF940	0.33	-0.8
935,329	+		GFF940	0.36	-1.0
935,354	-		GFF940	0.40	-1.0
935,371	+		GFF940	0.43	-0.2
935,374	+		GFF940	0.43	+0.5
935,374	+		GFF940	0.43	-0.3
935,379	-		GFF940	0.44	-0.8
935,382	-		GFF940	0.44	-0.8
935,385	+		GFF940	0.45	-0.2
935,385	+		GFF940	0.45	+0.3
935,402	+		GFF940	0.47	+0.7
935,402	+		GFF940	0.47	-0.1
935,402	+		GFF940	0.47	-1.5
935,402	+		GFF940	0.47	+0.0
935,403	-		GFF940	0.47	-1.4
935,403	-		GFF940	0.47	-0.6
935,410	-		GFF940	0.48	-0.7
935,410	-		GFF940	0.48	-1.3
935,410	-		GFF940	0.48	+0.1
935,410	-		GFF940	0.48	-0.3
935,415	-		GFF940	0.49	+1.2
935,425	+		GFF940	0.51	-1.1
935,425	+		GFF940	0.51	-0.6
935,425	+		GFF940	0.51	-0.3
935,428	-		GFF940	0.51	-1.2
935,428	-		GFF940	0.51	-0.5
935,430	+		GFF940	0.52	-0.5
935,430	+		GFF940	0.52	+0.4
935,430	+		GFF940	0.52	-0.6
935,430	+		GFF940	0.52	+0.6
935,430	+		GFF940	0.52	-1.4
935,430	+		GFF940	0.52	-0.7
935,430	+		GFF940	0.52	-0.8
935,430	+		GFF940	0.52	-0.6
935,430	+		GFF940	0.52	-1.5
935,430	+		GFF940	0.52	+0.8
935,430	+		GFF940	0.52	-1.3
935,430	+		GFF940	0.52	-0.8
935,430	+		GFF940	0.52	-0.2
935,430	+		GFF940	0.52	+0.1
935,430	+		GFF940	0.52	-0.4
935,430	+		GFF940	0.52	-2.1
935,430	+		GFF940	0.52	-0.1
935,430	+		GFF940	0.52	-1.3
935,430	+		GFF940	0.52	-0.1
935,430	+		GFF940	0.52	+0.9
935,430	+		GFF940	0.52	-1.5
935,430	+		GFF940	0.52	-1.2
935,430	-		GFF940	0.52	-1.0
935,433	-		GFF940	0.52	+0.2
935,433	-		GFF940	0.52	-0.8
935,438	-		GFF940	0.53	-0.9
935,438	-		GFF940	0.53	-1.2
935,438	-		GFF940	0.53	-1.5
935,438	-		GFF940	0.53	+0.0
935,438	-		GFF940	0.53	-0.5
935,438	-		GFF940	0.53	+0.7
935,438	-		GFF940	0.53	-0.1
935,438	-		GFF940	0.53	-1.4
935,438	-		GFF940	0.53	-0.6
935,438	-		GFF940	0.53	-1.9
935,438	-		GFF940	0.53	-0.9
935,438	-		GFF940	0.53	+1.1
935,438	-		GFF940	0.53	+0.3
935,438	-		GFF940	0.53	-0.7
935,438	-		GFF940	0.53	-2.8
935,438	-		GFF940	0.53	+0.6
935,438	-		GFF940	0.53	-0.9
935,438	-		GFF940	0.53	+0.5
935,449	+		GFF940	0.54	-1.8
935,458	-		GFF940	0.56	-0.3
935,471	+		GFF940	0.58	-1.1
935,479	-		GFF940	0.59	+0.5
935,479	-		GFF940	0.59	-2.0
935,479	-		GFF940	0.59	+0.2
935,479	-		GFF940	0.59	-0.6
935,481	+		GFF940	0.59	-0.1
935,489	-		GFF940	0.60	-0.3
935,489	-		GFF940	0.60	+0.7
935,506	+		GFF940	0.63	-0.5
935,514	-		GFF940	0.64	-1.0
935,528	-		GFF940	0.66	-0.6
935,530	+		GFF940	0.67	-1.3
935,548	+		GFF940	0.69	-0.6
935,556	-		GFF940	0.71	-1.0
935,573	+		GFF940	0.73	-1.1
935,607	-		GFF940	0.78	+0.7
935,614	+		GFF940	0.79	-1.4
935,624	+		GFF940	0.81	+1.3
935,632	-		GFF940	0.82	+0.3
935,636	+		GFF940	0.83	-0.5
935,636	+		GFF940	0.83	-2.8
935,636	+		GFF940	0.83	+0.5
935,644	-		GFF940	0.84	+0.7
935,644	-		GFF940	0.84	+0.6
935,644	-		GFF940	0.84	-0.7
935,644	-		GFF940	0.84	+0.9
935,651	+		GFF940	0.85	-1.7
935,661	+		GFF940	0.87	-1.0
935,661	+		GFF940	0.87	+1.2
935,661	+		GFF940	0.87	+0.9
935,669	-		GFF940	0.88	-0.7
935,669	-		GFF940	0.88	-2.3
935,669	-		GFF940	0.88	+0.8
935,671	+		GFF940	0.88	-1.4
935,671	+		GFF940	0.88	+0.7
935,671	+		GFF940	0.88	-0.3
935,671	+		GFF940	0.88	-0.9
935,679	-		GFF940	0.89	-1.2
935,679	-		GFF940	0.89	-0.7
935,679	-		GFF940	0.89	+0.1
935,679	-		GFF940	0.89	-0.6
935,723	-				-1.4
935,728	+				-0.8
935,736	-				-0.0
935,736	-				+0.1
935,736	-				-0.0
935,738	+				-0.7
935,738	+				+1.4
935,738	+				+0.4
935,738	+				+0.7
935,744	+				-1.1
935,746	-				-0.3
935,746	-				-0.8
935,746	-				+0.5
935,746	-				-0.5
935,746	-				-0.6
935,746	-				+0.7
935,746	-				+1.0
935,746	-				-0.3
935,751	-				-1.7
935,751	-				+0.2
935,752	-				+0.2
935,752	-				+0.2
935,759	+				-0.2
935,759	+				-0.9
935,767	-				-0.2
935,767	-				-0.3
935,767	-				-1.8
935,810	-				-0.7
935,812	+				-1.5
935,812	+				-1.9
935,812	+				+0.2
935,818	-				-0.3
935,818	-				-0.5
935,820	-				-0.3
935,858	+				+1.4
935,872	-				+1.4
935,874	-				-0.9
935,887	-				-1.6
935,908	+				-1.9
935,908	+				-0.2
935,908	+				-1.0
935,916	-				-0.1
935,916	-				-2.0
935,939	+				-0.2
935,944	+				-0.8
935,962	+				-1.2
935,970	+				-1.2
935,970	+				-1.2
936,057	+		GFF941	0.14	-1.6
936,060	-		GFF941	0.15	-0.6
936,060	-		GFF941	0.15	+0.3
936,065	-		GFF941	0.15	-0.2
936,069	+		GFF941	0.15	-0.5
936,072	-		GFF941	0.15	+0.6
936,095	+		GFF941	0.16	-1.3
936,095	+		GFF941	0.16	-0.8
936,097	+		GFF941	0.16	-0.2
936,104	-		GFF941	0.17	-0.2
936,127	-		GFF941	0.18	+0.1
936,136	+		GFF941	0.19	-0.1
936,139	-		GFF941	0.19	+0.5
936,141	+		GFF941	0.19	-1.7
936,144	-		GFF941	0.19	-2.1
936,144	-		GFF941	0.19	-1.1
936,144	-		GFF941	0.19	-1.0
936,149	+		GFF941	0.19	-0.2
936,157	-		GFF941	0.20	-1.1
936,164	-		GFF941	0.20	+0.4
936,172	+		GFF941	0.20	-1.1
936,175	-		GFF941	0.21	-1.6
936,191	-		GFF941	0.21	-1.2
936,225	+		GFF941	0.23	+0.2
936,225	+		GFF941	0.23	+1.8
936,225	+		GFF941	0.23	-0.7
936,225	+		GFF941	0.23	-1.0
936,226	-		GFF941	0.23	-1.7
936,232	-		GFF941	0.24	-0.3
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