Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF930 and GFF931 are separated by 140 nucleotides GFF931 and GFF932 are separated by 90 nucleotides
GFF930 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 925,937 to 927,082
GFF930
GFF931 - Ferredoxin, 2Fe-2S, at 927,223 to 927,537
GFF931
GFF932 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 927,628 to 928,836
GFF932
Position (kb) 927
928 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 926.224 kb on + strand, within GFF930 at 926.246 kb on + strand, within GFF930 at 926.249 kb on - strand, within GFF930 at 926.249 kb on - strand, within GFF930 at 926.280 kb on + strand, within GFF930 at 926.280 kb on + strand, within GFF930 at 926.280 kb on + strand, within GFF930 at 926.288 kb on - strand, within GFF930 at 926.288 kb on - strand, within GFF930 at 926.303 kb on + strand, within GFF930 at 926.303 kb on + strand, within GFF930 at 926.311 kb on - strand, within GFF930 at 926.311 kb on - strand, within GFF930 at 926.318 kb on + strand, within GFF930 at 926.318 kb on + strand, within GFF930 at 926.318 kb on + strand, within GFF930 at 926.318 kb on + strand, within GFF930 at 926.325 kb on + strand, within GFF930 at 926.326 kb on - strand, within GFF930 at 926.326 kb on - strand, within GFF930 at 926.326 kb on - strand, within GFF930 at 926.337 kb on + strand, within GFF930 at 926.337 kb on + strand, within GFF930 at 926.384 kb on - strand, within GFF930 at 926.485 kb on + strand, within GFF930 at 926.487 kb on - strand, within GFF930 at 926.493 kb on - strand, within GFF930 at 926.565 kb on + strand, within GFF930 at 926.570 kb on + strand, within GFF930 at 926.570 kb on + strand, within GFF930 at 926.614 kb on + strand, within GFF930 at 926.641 kb on + strand, within GFF930 at 926.651 kb on - strand, within GFF930 at 926.656 kb on - strand, within GFF930 at 926.699 kb on + strand, within GFF930 at 926.715 kb on - strand, within GFF930 at 926.735 kb on + strand, within GFF930 at 926.735 kb on + strand, within GFF930 at 926.742 kb on - strand, within GFF930 at 926.743 kb on - strand, within GFF930 at 926.743 kb on - strand, within GFF930 at 926.768 kb on + strand, within GFF930 at 926.773 kb on + strand, within GFF930 at 926.776 kb on - strand, within GFF930 at 926.818 kb on + strand, within GFF930 at 926.852 kb on + strand, within GFF930 at 926.865 kb on - strand, within GFF930 at 926.880 kb on + strand, within GFF930 at 926.895 kb on + strand, within GFF930 at 926.962 kb on + strand, within GFF930 at 926.962 kb on + strand, within GFF930 at 926.970 kb on - strand at 927.108 kb on - strand at 927.127 kb on - strand at 927.127 kb on - strand at 927.137 kb on - strand at 927.142 kb on - strand at 927.154 kb on + strand at 927.162 kb on + strand at 927.167 kb on + strand at 927.179 kb on + strand at 927.179 kb on + strand at 927.198 kb on + strand at 927.203 kb on + strand at 927.211 kb on - strand at 927.213 kb on + strand at 927.219 kb on + strand at 927.254 kb on + strand at 927.262 kb on - strand, within GFF931 at 927.273 kb on + strand, within GFF931 at 927.279 kb on + strand, within GFF931 at 927.285 kb on + strand, within GFF931 at 927.296 kb on + strand, within GFF931 at 927.310 kb on + strand, within GFF931 at 927.318 kb on + strand, within GFF931 at 927.318 kb on - strand, within GFF931 at 927.326 kb on - strand, within GFF931 at 927.331 kb on + strand, within GFF931 at 927.334 kb on - strand, within GFF931 at 927.336 kb on + strand, within GFF931 at 927.336 kb on + strand, within GFF931 at 927.339 kb on - strand, within GFF931 at 927.339 kb on - strand, within GFF931 at 927.344 kb on - strand, within GFF931 at 927.344 kb on - strand, within GFF931 at 927.344 kb on - strand, within GFF931 at 927.344 kb on - strand, within GFF931 at 927.365 kb on - strand, within GFF931 at 927.376 kb on + strand, within GFF931 at 927.400 kb on - strand, within GFF931 at 927.402 kb on + strand, within GFF931 at 927.402 kb on + strand, within GFF931 at 927.410 kb on - strand, within GFF931 at 927.419 kb on - strand, within GFF931 at 927.439 kb on + strand, within GFF931 at 927.457 kb on + strand, within GFF931 at 927.501 kb on - strand, within GFF931 at 927.569 kb on + strand at 927.584 kb on + strand at 927.597 kb on - strand at 927.621 kb on + strand at 927.639 kb on + strand at 927.639 kb on + strand at 927.639 kb on + strand at 927.640 kb on + strand at 927.640 kb on + strand at 927.648 kb on - strand at 927.648 kb on - strand at 927.716 kb on - strand at 927.716 kb on - strand at 927.718 kb on - strand at 927.731 kb on - strand at 927.785 kb on - strand, within GFF932 at 927.788 kb on + strand, within GFF932 at 927.791 kb on + strand, within GFF932 at 927.804 kb on - strand, within GFF932 at 927.814 kb on - strand, within GFF932 at 927.865 kb on + strand, within GFF932 at 927.865 kb on + strand, within GFF932 at 927.873 kb on - strand, within GFF932 at 927.926 kb on + strand, within GFF932 at 927.942 kb on - strand, within GFF932 at 927.944 kb on - strand, within GFF932 at 928.036 kb on + strand, within GFF932 at 928.044 kb on - strand, within GFF932 at 928.048 kb on + strand, within GFF932 at 928.048 kb on + strand, within GFF932 at 928.048 kb on + strand, within GFF932 at 928.048 kb on + strand, within GFF932 at 928.049 kb on - strand, within GFF932 at 928.056 kb on - strand, within GFF932 at 928.056 kb on - strand, within GFF932 at 928.056 kb on - strand, within GFF932 at 928.056 kb on - strand, within GFF932 at 928.056 kb on - strand, within GFF932 at 928.066 kb on - strand, within GFF932 at 928.077 kb on + strand, within GFF932 at 928.094 kb on + strand, within GFF932 at 928.112 kb on + strand, within GFF932 at 928.114 kb on - strand, within GFF932 at 928.147 kb on - strand, within GFF932 at 928.149 kb on - strand, within GFF932 at 928.156 kb on + strand, within GFF932 at 928.166 kb on + strand, within GFF932 at 928.174 kb on - strand, within GFF932 at 928.180 kb on + strand, within GFF932 at 928.188 kb on - strand, within GFF932 at 928.188 kb on - strand, within GFF932 at 928.188 kb on - strand, within GFF932 at 928.193 kb on - strand, within GFF932 at 928.195 kb on - strand, within GFF932 at 928.202 kb on + strand, within GFF932 at 928.202 kb on + strand, within GFF932 at 928.210 kb on - strand, within GFF932 at 928.210 kb on - strand, within GFF932 at 928.210 kb on - strand, within GFF932 at 928.210 kb on - strand, within GFF932 at 928.211 kb on - strand, within GFF932 at 928.215 kb on + strand, within GFF932 at 928.215 kb on + strand, within GFF932 at 928.321 kb on + strand, within GFF932 at 928.321 kb on + strand, within GFF932 at 928.321 kb on + strand, within GFF932 at 928.321 kb on + strand, within GFF932 at 928.321 kb on + strand, within GFF932 at 928.321 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.326 kb on + strand, within GFF932 at 928.329 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.334 kb on - strand, within GFF932 at 928.347 kb on - strand, within GFF932 at 928.347 kb on - strand, within GFF932 at 928.367 kb on + strand, within GFF932 at 928.367 kb on + strand, within GFF932 at 928.367 kb on + strand, within GFF932 at 928.367 kb on + strand, within GFF932 at 928.367 kb on + strand, within GFF932 at 928.375 kb on - strand, within GFF932 at 928.375 kb on - strand, within GFF932 at 928.375 kb on - strand, within GFF932 at 928.375 kb on - strand, within GFF932 at 928.377 kb on + strand, within GFF932 at 928.377 kb on + strand, within GFF932 at 928.388 kb on + strand, within GFF932 at 928.398 kb on + strand, within GFF932 at 928.403 kb on - strand, within GFF932 at 928.413 kb on - strand, within GFF932 at 928.413 kb on - strand, within GFF932 at 928.453 kb on + strand, within GFF932 at 928.453 kb on + strand, within GFF932 at 928.465 kb on + strand, within GFF932 at 928.498 kb on + strand, within GFF932 at 928.503 kb on + strand, within GFF932 at 928.506 kb on - strand, within GFF932 at 928.506 kb on - strand, within GFF932 at 928.511 kb on - strand, within GFF932 at 928.514 kb on + strand, within GFF932 at 928.519 kb on + strand, within GFF932 at 928.524 kb on + strand, within GFF932 at 928.532 kb on - strand, within GFF932 at 928.532 kb on - strand, within GFF932
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 926,224 + GFF930 0.25 -1.3 926,246 + GFF930 0.27 -0.3 926,249 - GFF930 0.27 +0.3 926,249 - GFF930 0.27 -0.1 926,280 + GFF930 0.30 -1.0 926,280 + GFF930 0.30 +0.0 926,280 + GFF930 0.30 +2.2 926,288 - GFF930 0.31 +0.3 926,288 - GFF930 0.31 -0.3 926,303 + GFF930 0.32 +0.1 926,303 + GFF930 0.32 -2.4 926,311 - GFF930 0.33 -1.0 926,311 - GFF930 0.33 +0.8 926,318 + GFF930 0.33 -1.1 926,318 + GFF930 0.33 -1.2 926,318 + GFF930 0.33 +1.1 926,318 + GFF930 0.33 +1.1 926,325 + GFF930 0.34 +1.4 926,326 - GFF930 0.34 +0.7 926,326 - GFF930 0.34 -0.1 926,326 - GFF930 0.34 +0.9 926,337 + GFF930 0.35 +0.4 926,337 + GFF930 0.35 -0.8 926,384 - GFF930 0.39 -1.3 926,485 + GFF930 0.48 +0.1 926,487 - GFF930 0.48 +0.6 926,493 - GFF930 0.49 -1.2 926,565 + GFF930 0.55 +1.4 926,570 + GFF930 0.55 -0.8 926,570 + GFF930 0.55 -0.4 926,614 + GFF930 0.59 +0.8 926,641 + GFF930 0.61 +0.9 926,651 - GFF930 0.62 -0.3 926,656 - GFF930 0.63 +0.7 926,699 + GFF930 0.66 +0.7 926,715 - GFF930 0.68 +1.6 926,735 + GFF930 0.70 +0.6 926,735 + GFF930 0.70 -0.4 926,742 - GFF930 0.70 -0.8 926,743 - GFF930 0.70 +0.0 926,743 - GFF930 0.70 -1.0 926,768 + GFF930 0.73 -0.1 926,773 + GFF930 0.73 +0.7 926,776 - GFF930 0.73 -1.7 926,818 + GFF930 0.77 -0.7 926,852 + GFF930 0.80 +0.4 926,865 - GFF930 0.81 +0.5 926,880 + GFF930 0.82 +0.3 926,895 + GFF930 0.84 +0.4 926,962 + GFF930 0.89 -2.7 926,962 + GFF930 0.89 +1.2 926,970 - -0.1 927,108 - +0.6 927,127 - -0.5 927,127 - -0.1 927,137 - -1.5 927,142 - +1.0 927,154 + +1.0 927,162 + -0.9 927,167 + +1.6 927,179 + +0.2 927,179 + +0.3 927,198 + -1.3 927,203 + +1.2 927,211 - -0.4 927,213 + -0.5 927,219 + -0.5 927,254 + -0.4 927,262 - GFF931 0.12 -0.5 927,273 + GFF931 0.16 +0.6 927,279 + GFF931 0.18 +1.6 927,285 + GFF931 0.20 +0.6 927,296 + GFF931 0.23 -1.0 927,310 + GFF931 0.28 +0.7 927,318 + GFF931 0.30 +0.6 927,318 - GFF931 0.30 -0.7 927,326 - GFF931 0.33 -0.7 927,331 + GFF931 0.34 +1.0 927,334 - GFF931 0.35 -2.1 927,336 + GFF931 0.36 +0.1 927,336 + GFF931 0.36 -0.8 927,339 - GFF931 0.37 -0.7 927,339 - GFF931 0.37 -0.3 927,344 - GFF931 0.38 -2.2 927,344 - GFF931 0.38 +0.8 927,344 - GFF931 0.38 -0.8 927,344 - GFF931 0.38 +0.2 927,365 - GFF931 0.45 +0.6 927,376 + GFF931 0.49 +0.2 927,400 - GFF931 0.56 -0.0 927,402 + GFF931 0.57 +0.9 927,402 + GFF931 0.57 -1.1 927,410 - GFF931 0.59 +0.1 927,419 - GFF931 0.62 +0.6 927,439 + GFF931 0.69 -0.8 927,457 + GFF931 0.74 -0.7 927,501 - GFF931 0.88 +1.4 927,569 + +0.0 927,584 + +0.4 927,597 - -0.0 927,621 + -0.7 927,639 + +0.1 927,639 + -0.5 927,639 + -1.8 927,640 + +1.0 927,640 + -1.3 927,648 - -0.0 927,648 - -1.1 927,716 - +0.2 927,716 - +0.2 927,718 - -0.2 927,731 - +1.3 927,785 - GFF932 0.13 -1.7 927,788 + GFF932 0.13 -2.1 927,791 + GFF932 0.13 -1.4 927,804 - GFF932 0.15 -1.8 927,814 - GFF932 0.15 +0.8 927,865 + GFF932 0.20 -0.7 927,865 + GFF932 0.20 +0.5 927,873 - GFF932 0.20 -1.0 927,926 + GFF932 0.25 -0.7 927,942 - GFF932 0.26 -0.9 927,944 - GFF932 0.26 -0.5 928,036 + GFF932 0.34 -1.1 928,044 - GFF932 0.34 -2.0 928,048 + GFF932 0.35 -0.8 928,048 + GFF932 0.35 -0.9 928,048 + GFF932 0.35 +1.0 928,048 + GFF932 0.35 -1.8 928,049 - GFF932 0.35 +0.6 928,056 - GFF932 0.35 -1.1 928,056 - GFF932 0.35 -1.0 928,056 - GFF932 0.35 -0.1 928,056 - GFF932 0.35 -0.8 928,056 - GFF932 0.35 +0.4 928,066 - GFF932 0.36 -1.6 928,077 + GFF932 0.37 -1.1 928,094 + GFF932 0.39 -0.5 928,112 + GFF932 0.40 -0.3 928,114 - GFF932 0.40 -0.5 928,147 - GFF932 0.43 +0.4 928,149 - GFF932 0.43 -1.4 928,156 + GFF932 0.44 -0.1 928,166 + GFF932 0.44 +0.3 928,174 - GFF932 0.45 +1.1 928,180 + GFF932 0.46 +1.6 928,188 - GFF932 0.46 +1.5 928,188 - GFF932 0.46 -2.5 928,188 - GFF932 0.46 +0.2 928,193 - GFF932 0.47 +1.7 928,195 - GFF932 0.47 -0.1 928,202 + GFF932 0.47 -0.7 928,202 + GFF932 0.47 -0.7 928,210 - GFF932 0.48 -1.2 928,210 - GFF932 0.48 +0.6 928,210 - GFF932 0.48 +1.1 928,210 - GFF932 0.48 -1.1 928,211 - GFF932 0.48 +0.4 928,215 + GFF932 0.49 -1.9 928,215 + GFF932 0.49 +1.4 928,321 + GFF932 0.57 -0.6 928,321 + GFF932 0.57 +0.1 928,321 + GFF932 0.57 -0.7 928,321 + GFF932 0.57 +1.2 928,321 + GFF932 0.57 -0.5 928,321 + GFF932 0.57 -0.3 928,326 + GFF932 0.58 -0.6 928,326 + GFF932 0.58 -1.3 928,326 + GFF932 0.58 -0.8 928,326 + GFF932 0.58 -0.8 928,326 + GFF932 0.58 +1.4 928,326 + GFF932 0.58 -0.3 928,326 + GFF932 0.58 +0.3 928,326 + GFF932 0.58 +1.6 928,326 + GFF932 0.58 +1.0 928,326 + GFF932 0.58 +1.5 928,329 - GFF932 0.58 +0.1 928,334 - GFF932 0.58 +0.2 928,334 - GFF932 0.58 +0.5 928,334 - GFF932 0.58 +2.8 928,334 - GFF932 0.58 -1.4 928,334 - GFF932 0.58 +0.4 928,334 - GFF932 0.58 -0.5 928,334 - GFF932 0.58 +0.5 928,334 - GFF932 0.58 -1.7 928,334 - GFF932 0.58 -0.3 928,334 - GFF932 0.58 -0.9 928,334 - GFF932 0.58 -1.0 928,334 - GFF932 0.58 -0.1 928,334 - GFF932 0.58 -1.4 928,334 - GFF932 0.58 -0.9 928,347 - GFF932 0.59 -0.1 928,347 - GFF932 0.59 -1.1 928,367 + GFF932 0.61 -0.7 928,367 + GFF932 0.61 -0.8 928,367 + GFF932 0.61 -0.3 928,367 + GFF932 0.61 -2.6 928,367 + GFF932 0.61 +0.2 928,375 - GFF932 0.62 +0.7 928,375 - GFF932 0.62 +1.3 928,375 - GFF932 0.62 +0.3 928,375 - GFF932 0.62 +1.7 928,377 + GFF932 0.62 -1.2 928,377 + GFF932 0.62 -0.3 928,388 + GFF932 0.63 -1.3 928,398 + GFF932 0.64 -0.4 928,403 - GFF932 0.64 -0.6 928,413 - GFF932 0.65 +1.2 928,413 - GFF932 0.65 -0.9 928,453 + GFF932 0.68 -1.5 928,453 + GFF932 0.68 +1.9 928,465 + GFF932 0.69 +0.2 928,498 + GFF932 0.72 +0.2 928,503 + GFF932 0.72 -1.2 928,506 - GFF932 0.73 -1.6 928,506 - GFF932 0.73 +0.5 928,511 - GFF932 0.73 -0.1 928,514 + GFF932 0.73 -1.1 928,519 + GFF932 0.74 +1.6 928,524 + GFF932 0.74 +1.5 928,532 - GFF932 0.75 -1.4 928,532 - GFF932 0.75 -0.8
Or see this region's nucleotide sequence