Strain Fitness in Sphingobium sp. HT1-2 around GFF930

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
924,937	+				+0.3
924,939	-				-0.1
924,939	-				+0.9
924,944	-				-1.4
924,946	+				+0.2
924,948	+				-0.3
924,962	+				+0.6
924,968	+				-0.1
924,975	-				-0.2
925,001	+				+0.3
925,011	+				-1.3
925,019	-				+1.5
925,019	-				+0.8
925,020	+				-1.2
925,021	-				-1.7
925,027	+				-0.9
925,027	+				+0.0
925,027	+				-2.0
925,027	+				+0.9
925,027	+				-0.7
925,027	+				+0.1
925,028	-				-0.1
925,035	-				-0.1
925,035	-				+0.2
925,035	-				-1.2
925,070	+				+0.8
925,086	-				-0.7
925,098	-				+0.7
925,105	+				-0.7
925,105	+				+0.6
925,105	+				+0.3
925,105	+				+1.6
925,105	+				+0.5
925,105	+				-2.8
925,105	+				+1.3
925,105	-				-1.4
925,105	-				-0.1
925,113	-				+1.3
925,113	-				-0.1
925,113	-				-1.1
925,113	-				-1.2
925,113	-				-1.4
925,113	-				-2.0
925,113	-				-1.3
925,113	-				+1.9
925,113	-				+0.1
925,113	-				-1.6
925,113	-				-1.9
925,113	-				-0.4
925,113	-				-1.4
925,116	-		GFF929	0.10	-1.1
925,121	-		GFF929	0.11	-1.4
925,128	-		GFF929	0.11	+0.3
925,131	+		GFF929	0.12	-1.0
925,132	+		GFF929	0.12	-0.7
925,132	+		GFF929	0.12	-1.4
925,132	+		GFF929	0.12	-0.7
925,140	-		GFF929	0.13	+1.0
925,160	-		GFF929	0.15	-0.1
925,165	-		GFF929	0.16	-0.1
925,172	-		GFF929	0.16	-2.1
925,179	-		GFF929	0.17	-0.8
925,219	-		GFF929	0.21	-0.3
925,278	+		GFF929	0.28	-0.1
925,286	-		GFF929	0.29	-0.6
925,286	-		GFF929	0.29	-1.7
925,286	-		GFF929	0.29	-0.1
925,295	+		GFF929	0.30	+0.5
925,295	+		GFF929	0.30	-1.8
925,328	-		GFF929	0.33	-0.6
925,379	-		GFF929	0.39	-0.6
925,386	+		GFF929	0.40	-1.0
925,407	+		GFF929	0.42	+0.1
925,436	-		GFF929	0.45	+1.5
925,503	+		GFF929	0.52	+0.8
925,511	-		GFF929	0.53	-0.5
925,511	-		GFF929	0.53	-1.7
925,511	-		GFF929	0.53	+0.9
925,512	+		GFF929	0.53	-0.7
925,512	-		GFF929	0.53	+1.2
925,519	+		GFF929	0.54	-0.3
925,525	+		GFF929	0.55	-0.6
925,530	+		GFF929	0.55	-1.3
925,533	-		GFF929	0.56	-0.0
925,554	+		GFF929	0.58	+0.8
925,555	-		GFF929	0.58	-1.4
925,565	+		GFF929	0.59	-1.3
925,568	-		GFF929	0.60	+0.4
925,573	-		GFF929	0.60	-0.3
925,573	-		GFF929	0.60	-0.1
925,586	+		GFF929	0.62	+0.2
925,605	+		GFF929	0.64	-0.2
925,613	-		GFF929	0.64	-1.2
925,623	+		GFF929	0.66	+0.4
925,624	+		GFF929	0.66	+0.6
925,624	+		GFF929	0.66	-1.9
925,632	-		GFF929	0.67	+0.1
925,632	-		GFF929	0.67	+0.2
925,633	+		GFF929	0.67	-1.4
925,641	-		GFF929	0.68	-0.7
925,645	-		GFF929	0.68	+0.8
925,645	-		GFF929	0.68	-0.7
925,658	+		GFF929	0.69	-0.6
925,658	+		GFF929	0.69	-0.6
925,658	+		GFF929	0.69	-1.6
925,666	-		GFF929	0.70	+0.3
925,666	-		GFF929	0.70	+0.4
925,666	-		GFF929	0.70	+0.7
925,668	+		GFF929	0.70	+0.6
925,668	+		GFF929	0.70	-0.6
925,676	-		GFF929	0.71	-0.7
925,701	+		GFF929	0.74	+0.3
925,709	-		GFF929	0.75	-1.0
925,710	-		GFF929	0.75	-0.4
925,711	+		GFF929	0.75	-0.7
925,711	+		GFF929	0.75	+1.3
925,711	+		GFF929	0.75	-1.1
925,711	+		GFF929	0.75	+0.3
925,711	+		GFF929	0.75	-0.3
925,711	+		GFF929	0.75	-0.4
925,711	+		GFF929	0.75	-1.0
925,711	+		GFF929	0.75	+0.6
925,711	+		GFF929	0.75	-0.2
925,711	+		GFF929	0.75	+0.6
925,719	-		GFF929	0.76	-0.2
925,719	-		GFF929	0.76	-0.4
925,719	-		GFF929	0.76	+1.1
925,719	-		GFF929	0.76	-0.6
925,719	-		GFF929	0.76	-0.3
925,719	-		GFF929	0.76	-1.1
925,719	-		GFF929	0.76	-1.3
925,719	-		GFF929	0.76	-0.2
925,719	-		GFF929	0.76	+0.5
925,734	+		GFF929	0.78	-1.6
925,753	-		GFF929	0.80	-0.5
925,758	-		GFF929	0.80	+0.9
925,791	+		GFF929	0.84	-0.2
925,808	+		GFF929	0.86	-0.9
925,816	-		GFF929	0.87	-0.2
925,825	+		GFF929	0.88	+0.3
925,825	+		GFF929	0.88	-0.3
925,825	+		GFF929	0.88	+1.6
925,825	+		GFF929	0.88	-1.3
925,825	+		GFF929	0.88	-0.2
925,825	+		GFF929	0.88	+0.8
925,830	+		GFF929	0.88	+0.8
925,830	+		GFF929	0.88	-0.3
925,830	+		GFF929	0.88	+0.7
925,833	-		GFF929	0.89	-0.2
925,835	+		GFF929	0.89	+0.4
925,838	-		GFF929	0.89	+0.4
925,838	-		GFF929	0.89	-0.6
925,838	-		GFF929	0.89	-0.9
925,838	-		GFF929	0.89	+0.1
925,843	-		GFF929	0.90	+1.3
925,843	-		GFF929	0.90	-0.9
925,843	-		GFF929	0.90	+1.2
925,843	-		GFF929	0.90	-0.4
925,843	-		GFF929	0.90	-0.2
925,854	-				-0.6
925,856	-				-0.6
925,859	-				-1.1
925,859	-				-0.4
925,867	+				-0.2
925,873	+				+1.4
925,873	+				+0.3
925,921	+				+0.6
925,921	+				-0.2
925,921	-				-0.2
925,929	-				+1.4
925,945	+				-0.6
926,020	+				+0.3
926,033	-				-0.3
926,035	+				+0.7
926,049	+				-1.3
926,057	-		GFF930	0.10	+1.0
926,062	-		GFF930	0.11	-1.6
926,062	-		GFF930	0.11	-0.3
926,064	-		GFF930	0.11	-0.7
926,137	+		GFF930	0.17	+0.8
926,142	+		GFF930	0.18	+1.1
926,142	+		GFF930	0.18	+0.1
926,150	-		GFF930	0.19	-0.4
926,167	+		GFF930	0.20	-1.6
926,175	-		GFF930	0.21	-0.8
926,180	-		GFF930	0.21	-0.6
926,191	+		GFF930	0.22	-1.6
926,201	+		GFF930	0.23	-1.4
926,214	+		GFF930	0.24	-1.2
926,214	+		GFF930	0.24	-1.1
926,214	+		GFF930	0.24	+0.7
926,214	+		GFF930	0.24	-1.9
926,222	-		GFF930	0.25	+0.7
926,224	+		GFF930	0.25	-0.7
926,224	+		GFF930	0.25	-1.6
926,224	+		GFF930	0.25	-0.7
926,224	+		GFF930	0.25	+0.3
926,224	+		GFF930	0.25	-0.9
926,227	-		GFF930	0.25	-0.4
926,227	-		GFF930	0.25	-0.3
926,232	-		GFF930	0.26	-1.5
926,232	-		GFF930	0.26	-0.2
926,232	-		GFF930	0.26	-1.7
926,241	+		GFF930	0.27	-0.7
926,246	+		GFF930	0.27	-0.6
926,249	-		GFF930	0.27	-0.0
926,249	-		GFF930	0.27	-0.6
926,249	-		GFF930	0.27	-0.4
926,249	-		GFF930	0.27	-0.3
926,280	+		GFF930	0.30	-1.1
926,280	+		GFF930	0.30	-1.3
926,280	+		GFF930	0.30	-0.3
926,280	+		GFF930	0.30	+1.9
926,280	+		GFF930	0.30	-0.6
926,280	+		GFF930	0.30	+0.8
926,286	-		GFF930	0.30	+0.7
926,288	-		GFF930	0.31	-0.0
926,288	-		GFF930	0.31	-1.1
926,288	-		GFF930	0.31	+1.2
926,288	-		GFF930	0.31	-0.6
926,303	+		GFF930	0.32	-0.2
926,303	+		GFF930	0.32	+0.3
926,303	+		GFF930	0.32	-2.7
926,311	-		GFF930	0.33	-1.0
926,311	-		GFF930	0.33	+1.2
926,311	-		GFF930	0.33	-1.3
926,311	-		GFF930	0.33	+0.5
926,318	+		GFF930	0.33	+1.5
926,318	+		GFF930	0.33	-1.4
926,318	+		GFF930	0.33	-1.5
926,318	+		GFF930	0.33	+0.8
926,318	+		GFF930	0.33	+0.8
926,325	+		GFF930	0.34	+1.1
926,326	-		GFF930	0.34	-0.4
926,326	-		GFF930	0.34	+0.6
926,337	+		GFF930	0.35	+0.1
926,337	+		GFF930	0.35	-1.1
926,347	+		GFF930	0.36	-0.2
926,347	+		GFF930	0.36	-0.8
926,383	-		GFF930	0.39	-0.9
926,384	-		GFF930	0.39	-1.6
926,389	-		GFF930	0.39	-2.2
926,440	-		GFF930	0.44	-1.4
926,446	-		GFF930	0.44	+0.6
926,485	+		GFF930	0.48	-0.2
926,485	+		GFF930	0.48	-0.2
926,485	+		GFF930	0.48	-1.4
926,487	-		GFF930	0.48	+0.3
926,493	-		GFF930	0.49	-1.5
926,518	+		GFF930	0.51	-1.0
926,560	+		GFF930	0.54	+0.1
926,565	+		GFF930	0.55	+1.1
926,568	-		GFF930	0.55	+0.0
926,570	+		GFF930	0.55	-1.1
926,570	+		GFF930	0.55	-0.7
926,589	-		GFF930	0.57	-0.7
926,603	-		GFF930	0.58	+1.0
926,608	+		GFF930	0.59	-0.4
926,614	+		GFF930	0.59	+0.5
926,619	+		GFF930	0.60	-0.2
926,641	+		GFF930	0.61	-0.2
926,641	+		GFF930	0.61	+0.6
926,648	+		GFF930	0.62	-1.2
926,651	-		GFF930	0.62	-0.6
926,656	-		GFF930	0.63	+0.4
926,682	+		GFF930	0.65	-1.1
926,699	+		GFF930	0.66	+0.4
926,703	-		GFF930	0.67	+1.7
926,707	-		GFF930	0.67	-0.0
926,707	-		GFF930	0.67	+0.2
926,735	+		GFF930	0.70	+0.3
926,735	+		GFF930	0.70	-0.7
926,742	-		GFF930	0.70	-1.1
926,743	-		GFF930	0.70	-0.3
926,743	-		GFF930	0.70	-1.3
926,743	-		GFF930	0.70	-0.7
926,768	+		GFF930	0.73	-0.4
926,773	+		GFF930	0.73	-0.7
926,776	-		GFF930	0.73	-1.2
926,776	-		GFF930	0.73	-1.0
926,776	-		GFF930	0.73	-2.0
926,779	+		GFF930	0.73	+1.2
926,779	+		GFF930	0.73	+0.7
926,787	+		GFF930	0.74	-1.1
926,818	+		GFF930	0.77	-1.0
926,828	+		GFF930	0.78	+0.2
926,865	-		GFF930	0.81	+0.2
926,866	+		GFF930	0.81	-1.3
926,866	-		GFF930	0.81	-0.6
926,880	+		GFF930	0.82	+0.0
926,880	+		GFF930	0.82	-0.3
926,895	+		GFF930	0.84	+0.1
926,898	-		GFF930	0.84	-0.8
926,899	+		GFF930	0.84	-0.3
926,907	+		GFF930	0.85	-0.8
926,915	-		GFF930	0.85	-0.3
926,962	+		GFF930	0.89	-3.0
926,962	+		GFF930	0.89	+1.0
926,962	+		GFF930	0.89	-0.2
926,970	-				+0.8
926,970	-				-0.7
926,970	-				-0.1
926,970	-				-0.4
926,970	-				+0.3
926,970	-				-2.0
926,970	-				-0.7
926,984	-				-0.6
926,998	+				-0.7
927,085	+				-1.3
927,085	-				-1.5
927,087	-				-0.6
927,087	-				-0.7
927,092	-				-0.1
927,116	-				-0.7
927,127	-				-0.8
927,127	-				-0.4
927,137	-				-1.8
927,142	-				-0.4
927,142	-				+0.7
927,154	+				+0.7
927,167	+				+1.3
927,178	+				+1.3
927,179	+				-0.1
927,179	+				+0.0
927,179	+				-1.3
927,181	-				-1.0
927,186	-				-1.1
927,187	-				-2.1
927,187	-				-0.9
927,193	-				-0.6
927,198	+				-0.7
927,198	+				-1.1
927,198	+				-1.6
927,203	+				+0.9
927,211	-				-0.7
927,211	-				-1.4
927,213	+				-0.3
927,213	+				-0.8
927,214	+				-0.9
927,219	+				-0.8
927,221	-				-0.7
927,254	+				-0.7
927,254	+				-1.1
927,262	-		GFF931	0.12	-1.1
927,262	-		GFF931	0.12	-0.6
927,262	-		GFF931	0.12	-0.8
927,279	+		GFF931	0.18	+1.3
927,279	+		GFF931	0.18	+0.0
927,281	-		GFF931	0.18	+0.3
927,287	-		GFF931	0.20	+0.3
927,287	-		GFF931	0.20	-0.4
927,296	+		GFF931	0.23	-1.3
927,310	+		GFF931	0.28	+0.4
927,318	+		GFF931	0.30	+0.3
927,318	-		GFF931	0.30	-0.3
927,326	-		GFF931	0.33	-1.0
927,334	-		GFF931	0.35	-2.4
927,336	+		GFF931	0.36	-0.2
927,336	+		GFF931	0.36	-1.1
927,339	-		GFF931	0.37	-1.0
927,339	-		GFF931	0.37	+1.7
927,339	-		GFF931	0.37	-0.6
927,340	-		GFF931	0.37	-0.5
927,344	-		GFF931	0.38	-2.5
927,344	-		GFF931	0.38	+0.5
927,344	-		GFF931	0.38	-1.1
927,344	-		GFF931	0.38	-0.1
927,359	+		GFF931	0.43	-0.8
927,365	-		GFF931	0.45	+0.3
927,367	-		GFF931	0.46	-0.1
927,376	+		GFF931	0.49	+0.6
927,376	+		GFF931	0.49	-0.1
927,376	+		GFF931	0.49	+0.6
927,383	+		GFF931	0.51	-0.4
927,400	-		GFF931	0.56	-0.3
927,402	+		GFF931	0.57	+0.6
927,402	+		GFF931	0.57	+0.8
927,402	+		GFF931	0.57	-1.4
927,410	-		GFF931	0.59	-0.2
927,419	-		GFF931	0.62	+0.3
927,430	+		GFF931	0.66	+1.1
927,439	+		GFF931	0.69	-1.1
927,457	+		GFF931	0.74	-1.0
927,457	+		GFF931	0.74	-1.1
927,457	+		GFF931	0.74	+0.3
927,470	-		GFF931	0.78	-0.3
927,545	+				+1.2
927,569	+				-0.3
927,577	-				-1.4
927,584	+				+0.1
927,596	-				+0.3
927,597	-				-0.3
927,621	+				-1.0
927,639	+				-0.2
927,639	+				-1.7
927,639	+				+0.3
927,639	+				-1.3
927,639	+				-0.2
927,639	+				-0.8
927,639	+				-1.4
927,639	+				-2.1
927,640	+				+0.7
927,640	+				+0.4
927,640	+				-1.6
927,641	-				-1.3
927,647	-				+0.8
927,647	-				-0.3
927,648	-				-0.3
927,648	-				-1.4
927,716	-				-0.1
927,716	-				-0.1
927,718	-				-0.6
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