Strain Fitness in Sphingobium sp. HT1-2 around GFF922

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
916,102	+		GFF921	0.32	-0.3
916,102	-		GFF921	0.32	-1.6
916,107	-		GFF921	0.33	-0.3
916,111	-		GFF921	0.33	-1.6
916,112	-		GFF921	0.33	+0.4
916,121	+		GFF921	0.34	-1.1
916,124	-		GFF921	0.34	-2.0
916,127	+		GFF921	0.34	-0.9
916,127	+		GFF921	0.34	-0.9
916,127	+		GFF921	0.34	-1.3
916,127	+		GFF921	0.34	+0.1
916,135	-		GFF921	0.35	-1.1
916,135	-		GFF921	0.35	-1.0
916,135	-		GFF921	0.35	-1.3
916,135	-		GFF921	0.35	-1.7
916,135	-		GFF921	0.35	-0.3
916,135	-		GFF921	0.35	-0.4
916,137	+		GFF921	0.35	-1.4
916,137	-		GFF921	0.35	-1.1
916,142	+		GFF921	0.35	+0.3
916,144	-		GFF921	0.35	-0.6
916,145	-		GFF921	0.36	+1.3
916,160	+		GFF921	0.37	-0.4
916,170	+		GFF921	0.37	+0.8
916,181	+		GFF921	0.38	-1.8
916,189	-		GFF921	0.39	+1.0
916,204	+		GFF921	0.40	+0.3
916,213	-		GFF921	0.41	-0.4
916,234	-		GFF921	0.42	-0.7
916,263	+		GFF921	0.44	-0.6
916,263	+		GFF921	0.44	-1.7
916,273	+		GFF921	0.45	+0.6
916,281	-		GFF921	0.46	-0.6
916,298	+		GFF921	0.47	+1.4
916,304	-		GFF921	0.47	-0.7
916,310	+		GFF921	0.48	-1.0
916,320	+		GFF921	0.48	+1.0
916,320	+		GFF921	0.48	-0.1
916,320	+		GFF921	0.48	-1.2
916,320	+		GFF921	0.48	+0.4
916,320	+		GFF921	0.48	-0.4
916,320	+		GFF921	0.48	-1.0
916,320	+		GFF921	0.48	-1.7
916,320	+		GFF921	0.48	-0.7
916,320	+		GFF921	0.48	-2.6
916,320	+		GFF921	0.48	-1.1
916,320	+		GFF921	0.48	-0.6
916,320	+		GFF921	0.48	-0.1
916,320	+		GFF921	0.48	-1.8
916,320	+		GFF921	0.48	-0.1
916,320	+		GFF921	0.48	-0.8
916,320	+		GFF921	0.48	-0.6
916,328	-		GFF921	0.49	+0.0
916,328	-		GFF921	0.49	+0.0
916,328	-		GFF921	0.49	-0.4
916,328	-		GFF921	0.49	-0.8
916,328	-		GFF921	0.49	-0.9
916,328	-		GFF921	0.49	+0.4
916,328	-		GFF921	0.49	-1.1
916,353	-		GFF921	0.51	+0.6
916,378	+		GFF921	0.53	-1.5
916,378	+		GFF921	0.53	-0.2
916,378	+		GFF921	0.53	-0.7
916,378	+		GFF921	0.53	-0.4
916,378	+		GFF921	0.53	-1.7
916,378	+		GFF921	0.53	-0.2
916,383	+		GFF921	0.53	+0.6
916,383	+		GFF921	0.53	+0.4
916,383	+		GFF921	0.53	+0.8
916,386	-		GFF921	0.53	-0.7
916,386	-		GFF921	0.53	-0.3
916,386	-		GFF921	0.53	+0.3
916,386	-		GFF921	0.53	+1.4
916,388	+		GFF921	0.53	-1.1
916,391	-		GFF921	0.54	+0.9
916,391	-		GFF921	0.54	+1.3
916,396	-		GFF921	0.54	-0.1
916,406	-		GFF921	0.55	-0.2
916,407	+		GFF921	0.55	-1.5
916,422	+		GFF921	0.56	-0.2
916,432	+		GFF921	0.57	-1.1
916,440	-		GFF921	0.57	-1.1
916,440	-		GFF921	0.57	+1.3
916,484	+		GFF921	0.60	-2.2
916,495	+		GFF921	0.61	+1.3
916,503	-		GFF921	0.62	-1.2
916,508	+		GFF921	0.62	-0.9
916,508	+		GFF921	0.62	-2.2
916,508	+		GFF921	0.62	-0.6
916,508	+		GFF921	0.62	+0.7
916,520	-		GFF921	0.63	-0.6
916,557	-		GFF921	0.66	-0.2
916,583	+		GFF921	0.68	-0.9
916,585	-		GFF921	0.68	-0.2
916,585	-		GFF921	0.68	-2.2
916,600	+		GFF921	0.69	-0.8
916,608	-		GFF921	0.70	+1.8
916,608	-		GFF921	0.70	+0.3
916,651	+		GFF921	0.73	+0.8
916,656	-		GFF921	0.73	-0.4
916,659	-		GFF921	0.73	-0.7
916,672	+		GFF921	0.74	-0.9
916,674	-		GFF921	0.74	-0.2
916,678	+		GFF921	0.75	-0.6
916,686	-		GFF921	0.75	-0.5
916,723	+		GFF921	0.78	-0.5
916,723	+		GFF921	0.78	+1.1
916,723	+		GFF921	0.78	-0.7
916,723	+		GFF921	0.78	+0.3
916,728	+		GFF921	0.78	+0.8
916,731	-		GFF921	0.79	-1.2
916,731	-		GFF921	0.79	+0.6
916,731	-		GFF921	0.79	-0.3
916,731	-		GFF921	0.79	-0.6
916,731	-		GFF921	0.79	-0.1
916,736	-		GFF921	0.79	-2.2
916,773	+		GFF921	0.82	-1.8
916,781	-		GFF921	0.82	-0.2
916,784	+		GFF921	0.82	-0.9
916,784	+		GFF921	0.82	-1.1
916,789	+		GFF921	0.83	-1.7
916,789	+		GFF921	0.83	+0.7
916,789	+		GFF921	0.83	-1.4
916,794	+		GFF921	0.83	-0.1
916,836	+		GFF921	0.86	-1.9
916,836	+		GFF921	0.86	-1.4
916,837	+		GFF921	0.86	-1.6
916,845	-		GFF921	0.87	-1.4
916,865	+		GFF921	0.88	-0.7
916,895	-				+0.0
916,899	-				-2.2
916,901	-				-0.6
916,907	-				-0.7
916,915	+				-0.6
916,915	+				-1.3
916,915	+				-0.7
916,915	+				+1.0
916,923	-				+0.8
916,923	-				-0.3
916,923	-				-1.5
916,923	-				-0.0
916,930	+				+1.6
916,930	+				-0.3
916,930	+				+0.3
916,938	-				-0.4
916,951	+				+0.6
916,951	+				-1.3
916,955	-				+1.4
916,959	-				-2.2
916,959	-				-0.0
916,959	-				-0.2
916,971	-				-1.1
916,983	+				-1.4
916,986	-				-1.5
916,986	-				+0.0
916,986	-				-0.4
916,986	-				-2.4
916,988	+				-1.4
916,991	-				+0.1
916,998	+				-0.7
917,023	+				+1.1
917,024	+				-0.7
917,045	-				-1.8
917,054	-				-0.9
917,088	-				+1.7
917,098	-				-1.9
917,099	-				-0.3
917,110	+				-0.2
917,110	+				-0.8
917,110	+				-1.5
917,111	-				-1.4
917,116	-				-0.4
917,118	-				-1.0
917,157	+				+1.1
917,159	+				-0.7
917,187	+		GFF922	0.11	-0.7
917,205	+		GFF922	0.14	+1.2
917,213	+		GFF922	0.15	-1.4
917,221	-		GFF922	0.16	-0.4
917,235	+		GFF922	0.18	-0.8
917,243	-		GFF922	0.19	-1.7
917,243	-		GFF922	0.19	-0.2
917,270	+		GFF922	0.22	-1.0
917,321	-		GFF922	0.29	-0.7
917,322	-		GFF922	0.29	-0.2
917,330	-		GFF922	0.30	-0.3
917,330	-		GFF922	0.30	-1.1
917,344	+		GFF922	0.32	+0.6
917,349	+		GFF922	0.32	-1.4
917,349	+		GFF922	0.32	-1.2
917,402	-		GFF922	0.39	+1.4
917,402	-		GFF922	0.39	+1.4
917,402	-		GFF922	0.39	-1.0
917,402	-		GFF922	0.39	-1.1
917,418	-		GFF922	0.41	-0.6
917,420	+		GFF922	0.41	+0.7
917,439	+		GFF922	0.44	+1.3
917,439	+		GFF922	0.44	+0.4
917,444	+		GFF922	0.44	-0.8
917,444	+		GFF922	0.44	-0.7
917,447	-		GFF922	0.45	+0.6
917,447	-		GFF922	0.45	+1.3
917,452	-		GFF922	0.45	+0.3
917,452	-		GFF922	0.45	-0.6
917,456	-		GFF922	0.46	+1.1
917,465	+		GFF922	0.47	+0.4
917,465	+		GFF922	0.47	+0.8
917,465	+		GFF922	0.47	-0.9
917,465	+		GFF922	0.47	+0.4
917,465	+		GFF922	0.47	-0.7
917,470	+		GFF922	0.48	-0.5
917,473	-		GFF922	0.48	+0.1
917,473	-		GFF922	0.48	-1.0
917,473	-		GFF922	0.48	-0.2
917,473	-		GFF922	0.48	+0.0
917,473	-		GFF922	0.48	-0.9
917,480	-		GFF922	0.49	+0.7
917,483	-		GFF922	0.49	+0.2
917,514	+		GFF922	0.53	-1.1
917,514	+		GFF922	0.53	-0.3
917,516	+		GFF922	0.54	-0.7
917,516	+		GFF922	0.54	+1.3
917,516	+		GFF922	0.54	-0.6
917,521	+		GFF922	0.54	+0.0
917,521	+		GFF922	0.54	-0.2
917,521	+		GFF922	0.54	+0.0
917,521	+		GFF922	0.54	+0.3
917,522	-		GFF922	0.54	+1.1
917,522	-		GFF922	0.54	-1.3
917,524	-		GFF922	0.55	+0.3
917,524	-		GFF922	0.55	-0.3
917,524	-		GFF922	0.55	-0.2
917,529	-		GFF922	0.55	-1.9
917,529	-		GFF922	0.55	+0.7
917,529	-		GFF922	0.55	+1.7
917,529	-		GFF922	0.55	-0.1
917,533	+		GFF922	0.56	+0.8
917,533	+		GFF922	0.56	+0.3
917,541	-		GFF922	0.57	-2.2
917,573	+		GFF922	0.61	-0.6
917,581	-		GFF922	0.62	-0.9
917,589	+		GFF922	0.63	-0.4
917,589	+		GFF922	0.63	-0.3
917,589	+		GFF922	0.63	-0.7
917,595	-		GFF922	0.64	+0.3
917,597	-		GFF922	0.64	-1.7
917,597	-		GFF922	0.64	-0.1
917,599	+		GFF922	0.64	-1.1
917,599	+		GFF922	0.64	+1.9
917,606	-		GFF922	0.65	-0.5
917,608	-		GFF922	0.65	+0.2
917,618	-		GFF922	0.67	+0.8
917,648	-		GFF922	0.71	-0.3
917,658	+		GFF922	0.72	-0.6
917,673	-		GFF922	0.74	-1.3
917,684	+		GFF922	0.75	+1.8
917,684	+		GFF922	0.75	-1.7
917,684	+		GFF922	0.75	-0.8
917,684	+		GFF922	0.75	+1.8
917,684	+		GFF922	0.75	-0.4
917,684	+		GFF922	0.75	-0.2
917,692	-		GFF922	0.76	-0.1
917,692	-		GFF922	0.76	+0.2
917,692	-		GFF922	0.76	-1.3
917,692	-		GFF922	0.76	-0.6
917,694	-		GFF922	0.76	-0.3
917,701	+		GFF922	0.77	-0.8
917,701	+		GFF922	0.77	+0.3
917,701	+		GFF922	0.77	-1.0
917,701	+		GFF922	0.77	-1.6
917,701	+		GFF922	0.77	-1.3
917,701	+		GFF922	0.77	-0.1
917,701	+		GFF922	0.77	-0.3
917,701	+		GFF922	0.77	-0.6
917,701	+		GFF922	0.77	-1.0
917,701	+		GFF922	0.77	-0.8
917,701	+		GFF922	0.77	+0.4
917,701	+		GFF922	0.77	-2.1
917,701	+		GFF922	0.77	-0.4
917,701	+		GFF922	0.77	-0.9
917,706	+		GFF922	0.78	-1.3
917,706	+		GFF922	0.78	+0.3
917,706	+		GFF922	0.78	-0.1
917,706	+		GFF922	0.78	-0.3
917,706	+		GFF922	0.78	+0.8
917,706	+		GFF922	0.78	-0.6
917,706	+		GFF922	0.78	-1.0
917,709	-		GFF922	0.78	+0.1
917,709	-		GFF922	0.78	-0.6
917,709	-		GFF922	0.78	-0.8
917,709	-		GFF922	0.78	+0.8
917,709	-		GFF922	0.78	-1.9
917,709	-		GFF922	0.78	-0.3
917,709	-		GFF922	0.78	-2.6
917,709	-		GFF922	0.78	-1.1
917,709	-		GFF922	0.78	-1.2
917,714	-		GFF922	0.79	-0.6
917,714	-		GFF922	0.79	-1.0
917,714	-		GFF922	0.79	-0.0
917,714	-		GFF922	0.79	+0.6
917,714	-		GFF922	0.79	-0.6
917,714	-		GFF922	0.79	-0.9
917,722	+		GFF922	0.80	-0.3
917,740	-		GFF922	0.82	-0.7
917,743	+		GFF922	0.83	-0.7
917,743	+		GFF922	0.83	+0.2
917,743	+		GFF922	0.83	+1.0
917,751	-		GFF922	0.84	-0.3
917,755	+		GFF922	0.84	+1.3
917,763	-		GFF922	0.85	-0.8
917,768	-		GFF922	0.86	+0.2
917,769	-		GFF922	0.86	+0.3
917,779	+		GFF922	0.87	+0.4
917,779	+		GFF922	0.87	-1.1
917,779	+		GFF922	0.87	+1.3
917,779	+		GFF922	0.87	+0.4
917,779	+		GFF922	0.87	-1.6
917,779	+		GFF922	0.87	-0.3
917,780	-		GFF922	0.87	-1.2
917,781	-		GFF922	0.88	+0.1
917,786	+		GFF922	0.88	+0.8
917,786	+		GFF922	0.88	-0.3
917,786	+		GFF922	0.88	-0.3
917,787	-		GFF922	0.88	-0.2
917,787	-		GFF922	0.88	+0.4
917,787	-		GFF922	0.88	-1.1
917,787	-		GFF922	0.88	+1.3
917,787	-		GFF922	0.88	-0.8
917,787	-		GFF922	0.88	-0.0
917,787	-		GFF922	0.88	+0.6
917,787	-		GFF922	0.88	+1.1
917,787	-		GFF922	0.88	+0.4
917,794	-		GFF922	0.89	-0.7
917,794	-		GFF922	0.89	-0.4
917,796	+		GFF922	0.89	-1.0
917,796	+		GFF922	0.89	-0.2
917,796	+		GFF922	0.89	-0.9
917,796	+		GFF922	0.89	-0.6
917,796	+		GFF922	0.89	-0.2
917,804	-				-1.8
917,804	-				+0.6
917,804	-				+0.6
917,809	-				+1.0
917,825	-				-1.1
917,848	-				+0.3
917,853	-				+0.8
917,853	-				+0.8
917,853	-				-1.3
917,861	+				-0.7
917,869	-				+0.8
917,875	+				+1.1
917,876	-				-0.9
917,880	+				-0.0
917,884	+				+0.3
917,885	-				-0.7
917,885	-				-0.9
917,889	+				-1.3
917,889	+				+0.2
917,906	-				-0.4
917,906	-				+0.1
917,907	-				-0.7
917,913	+				+0.3
917,913	+				-1.3
917,913	+				-1.3
917,913	+				-1.4
917,921	-				-0.1
917,921	-				-0.6
917,921	-				-0.7
917,921	-				+0.2
917,921	-				-0.6
917,931	+				+0.3
917,954	+				-1.0
917,962	-				-1.9
917,976	+				-1.3
917,976	+				-1.0
917,984	-				-0.9
918,025	+		GFF923	0.12	-0.2
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