Strain Fitness in Sphingobium sp. HT1-2 around GFF870

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
858,900	+		GFF869	0.33	-0.2
858,908	-		GFF869	0.34	+0.9
858,908	-		GFF869	0.34	-1.6
858,908	-		GFF869	0.34	+0.0
858,914	-		GFF869	0.34	-1.7
858,942	-		GFF869	0.37	+2.1
858,965	+		GFF869	0.38	-0.2
858,965	+		GFF869	0.38	+0.2
858,965	-		GFF869	0.38	-0.1
858,967	+		GFF869	0.38	+0.7
858,973	-		GFF869	0.39	-1.0
858,994	+		GFF869	0.41	+0.9
858,997	-		GFF869	0.41	+0.9
859,021	+		GFF869	0.43	+0.4
859,021	-		GFF869	0.43	-0.7
859,054	+		GFF869	0.45	-1.3
859,105	+		GFF869	0.49	-2.0
859,106	+		GFF869	0.49	-0.8
859,114	+		GFF869	0.50	+0.4
859,114	-		GFF869	0.50	-0.4
859,114	-		GFF869	0.50	-1.1
859,114	-		GFF869	0.50	+1.8
859,124	+		GFF869	0.51	-0.2
859,124	+		GFF869	0.51	+0.0
859,132	-		GFF869	0.51	-0.8
859,139	+		GFF869	0.52	+1.2
859,140	-		GFF869	0.52	-1.1
859,142	-		GFF869	0.52	-0.8
859,147	-		GFF869	0.52	+0.4
859,163	-		GFF869	0.54	+0.7
859,165	+		GFF869	0.54	+0.3
859,165	+		GFF869	0.54	-0.6
859,165	+		GFF869	0.54	-0.5
859,179	-		GFF869	0.55	+0.8
859,186	+		GFF869	0.55	-0.3
859,221	-		GFF869	0.58	+0.7
859,260	+		GFF869	0.61	-0.8
859,278	-		GFF869	0.62	+0.6
859,339	+		GFF869	0.67	-0.8
859,347	-		GFF869	0.68	-0.1
859,347	-		GFF869	0.68	-0.5
859,349	+		GFF869	0.68	-1.0
859,357	-		GFF869	0.68	-1.1
859,357	-		GFF869	0.68	+0.1
859,370	+		GFF869	0.69	+1.3
859,373	-		GFF869	0.70	-0.6
859,380	+		GFF869	0.70	-1.2
859,389	+		GFF869	0.71	+0.5
859,403	-		GFF869	0.72	-0.8
859,410	+		GFF869	0.73	-0.9
859,415	-		GFF869	0.73	-1.6
859,418	+		GFF869	0.73	-1.8
859,426	-		GFF869	0.74	-0.4
859,431	+		GFF869	0.74	+0.7
859,444	-		GFF869	0.75	+1.4
859,497	+		GFF869	0.79	-0.5
859,506	-		GFF869	0.80	+0.2
859,516	+		GFF869	0.81	-0.3
859,524	-		GFF869	0.81	-1.7
859,529	+		GFF869	0.82	-0.8
859,532	-		GFF869	0.82	-0.7
859,537	-		GFF869	0.82	+1.2
859,537	-		GFF869	0.82	-1.3
859,537	-		GFF869	0.82	-2.1
859,586	+		GFF869	0.86	-0.2
859,586	+		GFF869	0.86	+0.9
859,586	+		GFF869	0.86	-0.6
859,587	-		GFF869	0.86	-0.4
859,594	-		GFF869	0.87	+1.3
859,594	-		GFF869	0.87	-0.6
859,594	-		GFF869	0.87	-1.3
859,609	+		GFF869	0.88	-0.1
859,617	-		GFF869	0.88	-0.2
859,622	+		GFF869	0.89	-1.3
859,622	+		GFF869	0.89	-1.1
859,630	-		GFF869	0.89	-0.1
859,652	+				-0.3
859,659	+				-0.2
859,659	+				-1.6
859,659	+				+1.0
859,659	+				-1.0
859,674	+				-0.5
859,701	+				-1.1
859,709	-				+0.2
859,709	-				-0.9
859,726	+				-1.1
859,734	-				-0.8
859,734	-				-1.1
859,734	-				-0.5
859,756	+				-1.6
859,764	-				-1.1
859,764	-				-1.5
859,764	-				-0.2
859,764	-				-0.6
859,764	-				-0.8
859,775	+				-1.1
859,781	+				-0.3
859,781	-				-2.4
859,789	-				+0.3
859,789	-				-0.7
859,789	-				-1.3
859,791	+				-1.3
859,794	-				-0.8
859,823	-				-1.5
859,831	-				+0.0
859,836	+				-0.4
859,854	+				+0.5
859,857	-				+0.2
859,941	+				+0.2
859,941	+				+0.9
859,941	+				+0.0
859,944	-				+0.5
859,946	+				-1.6
859,946	+				-1.6
859,949	-		GFF870	0.10	-0.7
859,951	+		GFF870	0.10	-1.0
859,952	+		GFF870	0.11	-1.9
859,959	-		GFF870	0.12	-1.0
859,966	+		GFF870	0.13	-0.0
859,974	-		GFF870	0.15	-0.8
859,974	-		GFF870	0.15	-2.0
859,986	+		GFF870	0.17	+1.2
859,998	-		GFF870	0.19	-0.1
860,000	+		GFF870	0.19	-0.2
860,000	+		GFF870	0.19	+0.8
860,000	+		GFF870	0.19	-0.7
860,000	+		GFF870	0.19	+0.7
860,003	-		GFF870	0.20	+0.0
860,008	-		GFF870	0.21	-0.8
860,008	-		GFF870	0.21	-0.5
860,015	+		GFF870	0.22	-0.5
860,015	+		GFF870	0.22	-1.5
860,016	+		GFF870	0.22	-0.8
860,023	-		GFF870	0.24	-2.1
860,024	-		GFF870	0.24	-1.1
860,038	+		GFF870	0.26	+0.5
860,038	+		GFF870	0.26	-1.2
860,046	-		GFF870	0.28	+0.8
860,065	+		GFF870	0.31	-0.9
860,072	+		GFF870	0.33	-2.0
860,080	-		GFF870	0.34	-0.5
860,084	-		GFF870	0.35	-0.2
860,088	-		GFF870	0.36	+0.1
860,112	+		GFF870	0.40	-0.1
860,120	-		GFF870	0.42	-1.6
860,152	-		GFF870	0.48	-1.1
860,165	+		GFF870	0.50	-1.2
860,165	+		GFF870	0.50	-0.3
860,165	+		GFF870	0.50	+0.2
860,173	-		GFF870	0.51	+0.2
860,173	-		GFF870	0.51	-0.5
860,173	-		GFF870	0.51	-1.2
860,173	-		GFF870	0.51	-0.1
860,183	+		GFF870	0.53	-0.3
860,184	-		GFF870	0.54	-1.6
860,185	-		GFF870	0.54	-0.5
860,190	-		GFF870	0.55	-1.7
860,191	-		GFF870	0.55	-2.9
860,192	-		GFF870	0.55	+1.0
860,196	+		GFF870	0.56	-0.1
860,201	+		GFF870	0.57	-0.6
860,204	-		GFF870	0.57	-0.9
860,211	+		GFF870	0.59	+0.0
860,218	-		GFF870	0.60	+0.3
860,219	-		GFF870	0.60	+1.7
860,233	-		GFF870	0.63	-0.5
860,237	+		GFF870	0.63	-2.3
860,245	-		GFF870	0.65	-0.7
860,260	+		GFF870	0.68	-1.1
860,260	+		GFF870	0.68	-1.3
860,260	+		GFF870	0.68	+0.1
860,264	+		GFF870	0.68	-0.6
860,264	+		GFF870	0.68	-0.6
860,268	-		GFF870	0.69	-1.0
860,268	-		GFF870	0.69	+0.9
860,270	+		GFF870	0.69	+0.8
860,272	-		GFF870	0.70	+0.1
860,308	+		GFF870	0.76	-2.5
860,308	+		GFF870	0.76	-1.6
860,308	+		GFF870	0.76	+1.5
860,316	-		GFF870	0.78	-0.2
860,318	-		GFF870	0.78	-1.5
860,318	-		GFF870	0.78	-0.5
860,357	+		GFF870	0.86	-2.7
860,365	-		GFF870	0.87	-0.5
860,415	+				-0.2
860,423	-				-0.5
860,423	-				+0.1
860,425	+				+1.2
860,434	+				+0.4
860,464	-				-1.3
860,464	-				+0.9
860,464	-				+0.3
860,466	+				-1.7
860,466	+				-0.6
860,474	-				+0.1
860,474	-				-0.5
860,481	-				-1.1
860,483	+				-0.7
860,484	-				-0.0
860,489	-				+0.2
860,495	+				-2.0
860,496	+				-0.9
860,496	+				+0.0
860,496	+				-1.1
860,497	-				+0.5
860,497	-				+0.6
860,497	-				+0.8
860,497	-				+0.5
860,498	-				-2.8
860,504	-				-0.1
860,504	-				-0.5
860,576	+				-1.9
860,600	-				-0.8
860,620	-				-0.1
860,634	-		GFF871	0.10	-0.6
860,634	-		GFF871	0.10	+0.1
860,641	+		GFF871	0.11	+0.2
860,641	-		GFF871	0.11	-0.0
860,649	-		GFF871	0.12	-0.2
860,649	-		GFF871	0.12	-1.6
860,649	-		GFF871	0.12	-1.0
860,687	-		GFF871	0.15	-1.7
860,719	-		GFF871	0.17	+0.4
860,724	-		GFF871	0.18	-0.5
860,752	+		GFF871	0.20	-0.7
860,774	+		GFF871	0.22	-0.6
860,778	+		GFF871	0.22	+0.0
860,785	+		GFF871	0.23	-0.1
860,785	+		GFF871	0.23	-0.2
860,785	+		GFF871	0.23	-1.9
860,785	+		GFF871	0.23	-1.2
860,785	+		GFF871	0.23	-0.3
860,785	+		GFF871	0.23	-0.8
860,785	+		GFF871	0.23	-1.5
860,787	+		GFF871	0.23	+0.2
860,787	+		GFF871	0.23	-0.7
860,793	-		GFF871	0.23	+0.1
860,793	-		GFF871	0.23	-0.8
860,793	-		GFF871	0.23	-1.0
860,793	-		GFF871	0.23	+0.1
860,793	-		GFF871	0.23	-0.3
860,794	-		GFF871	0.24	-0.8
860,800	+		GFF871	0.24	-0.2
860,803	-		GFF871	0.24	+0.7
860,845	-		GFF871	0.28	-1.0
860,850	-		GFF871	0.28	+0.8
860,861	+		GFF871	0.29	-0.9
860,883	+		GFF871	0.31	-1.1
860,885	+		GFF871	0.31	-2.7
860,885	+		GFF871	0.31	-0.5
860,885	+		GFF871	0.31	-1.1
860,885	+		GFF871	0.31	-0.8
860,886	-		GFF871	0.31	-0.5
860,890	+		GFF871	0.31	+0.7
860,893	+		GFF871	0.32	-0.4
860,893	-		GFF871	0.32	-0.5
860,916	+		GFF871	0.33	-1.7
860,936	-		GFF871	0.35	-1.0
860,936	-		GFF871	0.35	-0.2
860,937	+		GFF871	0.35	-0.1
860,938	+		GFF871	0.35	+1.7
860,938	+		GFF871	0.35	-1.1
860,946	-		GFF871	0.36	+0.3
860,946	-		GFF871	0.36	-0.5
860,946	-		GFF871	0.36	-1.6
860,946	-		GFF871	0.36	-0.1
860,946	-		GFF871	0.36	-0.4
860,982	+		GFF871	0.39	+0.5
860,987	+		GFF871	0.39	-0.5
860,987	+		GFF871	0.39	-0.9
860,987	+		GFF871	0.39	-0.9
860,995	-		GFF871	0.40	-1.5
860,995	-		GFF871	0.40	-0.0
860,995	-		GFF871	0.40	-0.6
861,000	-		GFF871	0.40	-2.3
861,024	+		GFF871	0.42	-1.8
861,024	+		GFF871	0.42	+1.2
861,029	+		GFF871	0.43	+1.8
861,056	-		GFF871	0.45	+0.2
861,079	-		GFF871	0.47	+0.2
861,084	+		GFF871	0.47	+0.4
861,090	+		GFF871	0.48	+0.4
861,091	+		GFF871	0.48	+0.4
861,099	-		GFF871	0.48	-1.1
861,123	+		GFF871	0.50	-1.5
861,123	+		GFF871	0.50	-2.2
861,148	+		GFF871	0.52	-2.2
861,156	-		GFF871	0.53	-0.8
861,162	+		GFF871	0.54	-0.5
861,170	-		GFF871	0.54	-2.0
861,170	-		GFF871	0.54	-1.7
861,170	-		GFF871	0.54	-1.3
861,170	-		GFF871	0.54	-0.5
861,193	-		GFF871	0.56	+1.0
861,196	+		GFF871	0.56	+0.1
861,196	+		GFF871	0.56	+1.2
861,196	+		GFF871	0.56	-0.9
861,198	-		GFF871	0.57	+0.4
861,198	-		GFF871	0.57	-0.1
861,204	-		GFF871	0.57	+0.7
861,226	+		GFF871	0.59	+0.1
861,229	-		GFF871	0.59	+0.7
861,230	-		GFF871	0.59	+1.2
861,234	-		GFF871	0.60	-1.2
861,234	-		GFF871	0.60	-0.4
861,234	-		GFF871	0.60	-1.1
861,238	+		GFF871	0.60	+0.1
861,238	+		GFF871	0.60	+0.3
861,238	+		GFF871	0.60	-0.5
861,243	+		GFF871	0.60	-1.5
861,246	-		GFF871	0.61	-2.3
861,263	+		GFF871	0.62	-0.6
861,266	-		GFF871	0.62	-0.2
861,268	+		GFF871	0.62	+0.1
861,273	+		GFF871	0.63	-0.8
861,276	-		GFF871	0.63	+1.0
861,301	+		GFF871	0.65	-2.0
861,309	-		GFF871	0.66	-1.6
861,315	-		GFF871	0.66	-1.4
861,318	-		GFF871	0.66	-1.2
861,328	-		GFF871	0.67	+0.4
861,329	+		GFF871	0.67	+0.8
861,348	+		GFF871	0.69	+1.7
861,348	+		GFF871	0.69	-1.0
861,360	+		GFF871	0.70	+0.8
861,368	+		GFF871	0.71	+0.2
861,376	-		GFF871	0.71	-0.2
861,408	-		GFF871	0.74	-1.1
861,408	-		GFF871	0.74	-1.2
861,413	-		GFF871	0.74	-0.6