Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF809 and GFF810 are separated by 137 nucleotides GFF810 and GFF811 overlap by 38 nucleotides GFF811 and GFF812 are separated by 155 nucleotides
GFF809 - hypothetical protein, at 797,948 to 798,832
GFF809
GFF810 - Proton/glutamate symporter @ Sodium/glutamate symporter, at 798,970 to 800,298
GFF810
GFF811 - Putative reductase, at 800,261 to 800,830
GFF811
GFF812 - hypothetical protein, at 800,986 to 801,915
GFF812
Position (kb) 798
799
800
801 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 797.971 kb on + strand at 797.981 kb on + strand at 798.027 kb on + strand at 798.063 kb on - strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.088 kb on - strand, within GFF809 at 798.088 kb on - strand, within GFF809 at 798.093 kb on - strand, within GFF809 at 798.124 kb on - strand, within GFF809 at 798.124 kb on - strand, within GFF809 at 798.150 kb on + strand, within GFF809 at 798.162 kb on + strand, within GFF809 at 798.170 kb on - strand, within GFF809 at 798.170 kb on - strand, within GFF809 at 798.257 kb on - strand, within GFF809 at 798.264 kb on + strand, within GFF809 at 798.322 kb on - strand, within GFF809 at 798.337 kb on - strand, within GFF809 at 798.337 kb on - strand, within GFF809 at 798.419 kb on - strand, within GFF809 at 798.419 kb on - strand, within GFF809 at 798.425 kb on - strand, within GFF809 at 798.427 kb on - strand, within GFF809 at 798.443 kb on + strand, within GFF809 at 798.446 kb on - strand, within GFF809 at 798.448 kb on - strand, within GFF809 at 798.527 kb on - strand, within GFF809 at 798.541 kb on - strand, within GFF809 at 798.570 kb on + strand, within GFF809 at 798.574 kb on + strand, within GFF809 at 798.591 kb on + strand, within GFF809 at 798.591 kb on + strand, within GFF809 at 798.596 kb on + strand, within GFF809 at 798.603 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.637 kb on + strand, within GFF809 at 798.642 kb on + strand, within GFF809 at 798.645 kb on - strand, within GFF809 at 798.668 kb on - strand, within GFF809 at 798.668 kb on - strand, within GFF809 at 798.681 kb on + strand, within GFF809 at 798.710 kb on - strand, within GFF809 at 798.727 kb on + strand, within GFF809 at 798.738 kb on + strand, within GFF809 at 798.747 kb on + strand at 798.756 kb on + strand at 798.760 kb on - strand at 798.764 kb on - strand at 798.764 kb on - strand at 798.787 kb on + strand at 798.787 kb on + strand at 798.795 kb on - strand at 798.795 kb on - strand at 798.808 kb on + strand at 798.813 kb on + strand at 798.817 kb on - strand at 798.839 kb on - strand at 798.884 kb on - strand at 798.962 kb on - strand at 798.967 kb on + strand at 798.967 kb on + strand at 798.967 kb on + strand at 798.986 kb on + strand at 799.055 kb on + strand at 799.088 kb on + strand at 799.096 kb on - strand at 799.099 kb on + strand at 799.099 kb on + strand at 799.126 kb on - strand, within GFF810 at 799.146 kb on + strand, within GFF810 at 799.147 kb on + strand, within GFF810 at 799.149 kb on - strand, within GFF810 at 799.172 kb on - strand, within GFF810 at 799.172 kb on - strand, within GFF810 at 799.239 kb on - strand, within GFF810 at 799.241 kb on + strand, within GFF810 at 799.244 kb on + strand, within GFF810 at 799.244 kb on + strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.263 kb on + strand, within GFF810 at 799.269 kb on - strand, within GFF810 at 799.271 kb on - strand, within GFF810 at 799.271 kb on - strand, within GFF810 at 799.287 kb on - strand, within GFF810 at 799.304 kb on + strand, within GFF810 at 799.305 kb on - strand, within GFF810 at 799.312 kb on - strand, within GFF810 at 799.312 kb on - strand, within GFF810 at 799.312 kb on - strand, within GFF810 at 799.322 kb on - strand, within GFF810 at 799.354 kb on - strand, within GFF810 at 799.358 kb on + strand, within GFF810 at 799.366 kb on + strand, within GFF810 at 799.366 kb on + strand, within GFF810 at 799.366 kb on + strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.380 kb on + strand, within GFF810 at 799.381 kb on + strand, within GFF810 at 799.389 kb on + strand, within GFF810 at 799.407 kb on - strand, within GFF810 at 799.526 kb on - strand, within GFF810 at 799.531 kb on + strand, within GFF810 at 799.532 kb on + strand, within GFF810 at 799.537 kb on + strand, within GFF810 at 799.540 kb on - strand, within GFF810 at 799.552 kb on + strand, within GFF810 at 799.574 kb on + strand, within GFF810 at 799.578 kb on + strand, within GFF810 at 799.611 kb on + strand, within GFF810 at 799.655 kb on - strand, within GFF810 at 799.667 kb on - strand, within GFF810 at 799.675 kb on - strand, within GFF810 at 799.677 kb on + strand, within GFF810 at 799.685 kb on - strand, within GFF810 at 799.685 kb on - strand, within GFF810 at 799.716 kb on - strand, within GFF810 at 799.734 kb on - strand, within GFF810 at 799.741 kb on + strand, within GFF810 at 799.765 kb on - strand, within GFF810 at 799.768 kb on - strand, within GFF810 at 799.775 kb on - strand, within GFF810 at 799.777 kb on - strand, within GFF810 at 799.783 kb on - strand, within GFF810 at 799.785 kb on - strand, within GFF810 at 799.831 kb on + strand, within GFF810 at 799.837 kb on + strand, within GFF810 at 799.837 kb on + strand, within GFF810 at 799.852 kb on - strand, within GFF810 at 799.869 kb on + strand, within GFF810 at 799.930 kb on + strand, within GFF810 at 799.930 kb on + strand, within GFF810 at 799.949 kb on + strand, within GFF810 at 799.957 kb on - strand, within GFF810 at 799.967 kb on - strand, within GFF810 at 799.982 kb on + strand, within GFF810 at 799.982 kb on - strand, within GFF810 at 799.990 kb on + strand, within GFF810 at 799.990 kb on - strand, within GFF810 at 800.029 kb on - strand, within GFF810 at 800.029 kb on - strand, within GFF810 at 800.035 kb on - strand, within GFF810 at 800.035 kb on - strand, within GFF810 at 800.035 kb on - strand, within GFF810 at 800.035 kb on - strand, within GFF810 at 800.104 kb on + strand, within GFF810 at 800.159 kb on + strand, within GFF810 at 800.159 kb on + strand, within GFF810 at 800.159 kb on + strand, within GFF810 at 800.164 kb on + strand, within GFF810 at 800.167 kb on - strand at 800.167 kb on - strand at 800.170 kb on + strand at 800.201 kb on - strand at 800.238 kb on + strand at 800.289 kb on + strand at 800.289 kb on + strand at 800.289 kb on + strand at 800.289 kb on + strand at 800.291 kb on + strand at 800.291 kb on + strand at 800.297 kb on - strand at 800.322 kb on + strand, within GFF811 at 800.349 kb on + strand, within GFF811 at 800.349 kb on + strand, within GFF811 at 800.350 kb on - strand, within GFF811 at 800.350 kb on - strand, within GFF811 at 800.355 kb on + strand, within GFF811 at 800.355 kb on + strand, within GFF811 at 800.359 kb on + strand, within GFF811 at 800.367 kb on - strand, within GFF811 at 800.386 kb on - strand, within GFF811 at 800.402 kb on - strand, within GFF811 at 800.402 kb on - strand, within GFF811 at 800.402 kb on - strand, within GFF811 at 800.468 kb on - strand, within GFF811 at 800.468 kb on - strand, within GFF811 at 800.490 kb on - strand, within GFF811 at 800.580 kb on - strand, within GFF811 at 800.643 kb on + strand, within GFF811 at 800.662 kb on + strand, within GFF811 at 800.678 kb on - strand, within GFF811 at 800.704 kb on + strand, within GFF811 at 800.714 kb on + strand, within GFF811 at 800.717 kb on - strand, within GFF811 at 800.719 kb on + strand, within GFF811 at 800.727 kb on + strand, within GFF811 at 800.727 kb on - strand, within GFF811 at 800.739 kb on - strand, within GFF811 at 800.748 kb on - strand, within GFF811 at 800.748 kb on - strand, within GFF811 at 800.748 kb on - strand, within GFF811 at 800.748 kb on - strand, within GFF811 at 800.778 kb on - strand at 800.778 kb on - strand at 800.802 kb on - strand at 800.826 kb on + strand at 800.836 kb on + strand at 800.838 kb on + strand at 800.867 kb on - strand at 800.883 kb on + strand at 800.883 kb on + strand at 800.993 kb on + strand at 800.993 kb on + strand at 800.999 kb on - strand at 801.006 kb on + strand at 801.011 kb on + strand at 801.011 kb on + strand at 801.011 kb on + strand at 801.011 kb on + strand at 801.011 kb on + strand at 801.019 kb on - strand at 801.024 kb on - strand at 801.027 kb on + strand at 801.029 kb on - strand at 801.095 kb on + strand, within GFF812 at 801.095 kb on + strand, within GFF812 at 801.095 kb on + strand, within GFF812 at 801.103 kb on - strand, within GFF812 at 801.123 kb on - strand, within GFF812 at 801.125 kb on - strand, within GFF812 at 801.130 kb on - strand, within GFF812 at 801.169 kb on - strand, within GFF812 at 801.169 kb on - strand, within GFF812 at 801.169 kb on - strand, within GFF812 at 801.229 kb on - strand, within GFF812 at 801.237 kb on - strand, within GFF812 at 801.254 kb on - strand, within GFF812 at 801.254 kb on - strand, within GFF812 at 801.272 kb on - strand, within GFF812
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 797,971 + +0.4 797,981 + +0.4 798,027 + +0.2 798,063 - GFF809 0.13 +0.1 798,080 + GFF809 0.15 +1.4 798,080 + GFF809 0.15 -0.8 798,080 + GFF809 0.15 +0.9 798,080 + GFF809 0.15 +1.1 798,088 - GFF809 0.16 -0.4 798,088 - GFF809 0.16 -2.2 798,093 - GFF809 0.16 -0.4 798,124 - GFF809 0.20 +1.4 798,124 - GFF809 0.20 -0.5 798,150 + GFF809 0.23 -0.2 798,162 + GFF809 0.24 +1.0 798,170 - GFF809 0.25 +1.2 798,170 - GFF809 0.25 -0.4 798,257 - GFF809 0.35 +0.7 798,264 + GFF809 0.36 +1.2 798,322 - GFF809 0.42 -1.1 798,337 - GFF809 0.44 -0.1 798,337 - GFF809 0.44 +0.1 798,419 - GFF809 0.53 -0.3 798,419 - GFF809 0.53 -0.5 798,425 - GFF809 0.54 -0.5 798,427 - GFF809 0.54 +1.0 798,443 + GFF809 0.56 +1.6 798,446 - GFF809 0.56 +0.7 798,448 - GFF809 0.56 +0.1 798,527 - GFF809 0.65 -0.7 798,541 - GFF809 0.67 -0.3 798,570 + GFF809 0.70 -0.0 798,574 + GFF809 0.71 -0.3 798,591 + GFF809 0.73 +1.2 798,591 + GFF809 0.73 +0.2 798,596 + GFF809 0.73 -2.0 798,603 + GFF809 0.74 -0.0 798,622 + GFF809 0.76 -0.1 798,622 + GFF809 0.76 -0.1 798,622 + GFF809 0.76 +1.0 798,622 + GFF809 0.76 -0.5 798,622 + GFF809 0.76 +0.2 798,630 - GFF809 0.77 +0.6 798,630 - GFF809 0.77 -0.5 798,630 - GFF809 0.77 -0.8 798,630 - GFF809 0.77 -1.7 798,630 - GFF809 0.77 +0.7 798,630 - GFF809 0.77 +1.4 798,637 + GFF809 0.78 +0.7 798,642 + GFF809 0.78 +0.4 798,645 - GFF809 0.79 +0.7 798,668 - GFF809 0.81 +0.9 798,668 - GFF809 0.81 +1.0 798,681 + GFF809 0.83 +0.2 798,710 - GFF809 0.86 +0.1 798,727 + GFF809 0.88 +1.0 798,738 + GFF809 0.89 -0.3 798,747 + +3.1 798,756 + +0.3 798,760 - +2.6 798,764 - +0.8 798,764 - +1.2 798,787 + +0.1 798,787 + -0.1 798,795 - -1.0 798,795 - +1.3 798,808 + -1.1 798,813 + -0.6 798,817 - +0.7 798,839 - -0.6 798,884 - -0.8 798,962 - +0.6 798,967 + -0.7 798,967 + -1.4 798,967 + +0.2 798,986 + +0.2 799,055 + +0.5 799,088 + -0.0 799,096 - -0.1 799,099 + +2.6 799,099 + -0.1 799,126 - GFF810 0.12 -0.9 799,146 + GFF810 0.13 -2.0 799,147 + GFF810 0.13 +0.5 799,149 - GFF810 0.13 -1.1 799,172 - GFF810 0.15 +0.3 799,172 - GFF810 0.15 +0.0 799,239 - GFF810 0.20 +2.3 799,241 + GFF810 0.20 +2.0 799,244 + GFF810 0.21 -0.1 799,244 + GFF810 0.21 +0.2 799,252 - GFF810 0.21 +1.6 799,252 - GFF810 0.21 -1.3 799,252 - GFF810 0.21 -0.5 799,252 - GFF810 0.21 -0.1 799,252 - GFF810 0.21 +1.4 799,263 + GFF810 0.22 -0.8 799,269 - GFF810 0.22 +0.4 799,271 - GFF810 0.23 +0.4 799,271 - GFF810 0.23 +0.7 799,287 - GFF810 0.24 -0.9 799,304 + GFF810 0.25 -2.0 799,305 - GFF810 0.25 +1.0 799,312 - GFF810 0.26 +0.2 799,312 - GFF810 0.26 +1.1 799,312 - GFF810 0.26 -1.9 799,322 - GFF810 0.26 +1.0 799,354 - GFF810 0.29 -0.8 799,358 + GFF810 0.29 +0.3 799,366 + GFF810 0.30 -1.1 799,366 + GFF810 0.30 -0.0 799,366 + GFF810 0.30 -0.8 799,374 - GFF810 0.30 +1.2 799,374 - GFF810 0.30 -0.9 799,374 - GFF810 0.30 -0.8 799,374 - GFF810 0.30 -1.0 799,374 - GFF810 0.30 -0.4 799,380 + GFF810 0.31 -0.9 799,381 + GFF810 0.31 +0.8 799,389 + GFF810 0.32 -1.6 799,407 - GFF810 0.33 +1.1 799,526 - GFF810 0.42 +1.2 799,531 + GFF810 0.42 +0.3 799,532 + GFF810 0.42 -2.2 799,537 + GFF810 0.43 +1.4 799,540 - GFF810 0.43 +0.0 799,552 + GFF810 0.44 -0.3 799,574 + GFF810 0.45 +0.7 799,578 + GFF810 0.46 -0.5 799,611 + GFF810 0.48 -0.0 799,655 - GFF810 0.52 -0.8 799,667 - GFF810 0.52 -1.6 799,675 - GFF810 0.53 +0.6 799,677 + GFF810 0.53 +1.1 799,685 - GFF810 0.54 +0.3 799,685 - GFF810 0.54 -1.9 799,716 - GFF810 0.56 -0.3 799,734 - GFF810 0.57 +1.1 799,741 + GFF810 0.58 -1.0 799,765 - GFF810 0.60 +0.4 799,768 - GFF810 0.60 +0.6 799,775 - GFF810 0.61 +0.9 799,777 - GFF810 0.61 +0.6 799,783 - GFF810 0.61 -0.5 799,785 - GFF810 0.61 -0.3 799,831 + GFF810 0.65 +0.7 799,837 + GFF810 0.65 -0.4 799,837 + GFF810 0.65 +0.6 799,852 - GFF810 0.66 +0.1 799,869 + GFF810 0.68 -1.0 799,930 + GFF810 0.72 -0.7 799,930 + GFF810 0.72 +1.6 799,949 + GFF810 0.74 +0.6 799,957 - GFF810 0.74 -1.6 799,967 - GFF810 0.75 -0.3 799,982 + GFF810 0.76 -1.0 799,982 - GFF810 0.76 +0.9 799,990 + GFF810 0.77 +1.6 799,990 - GFF810 0.77 +2.0 800,029 - GFF810 0.80 -0.6 800,029 - GFF810 0.80 +0.6 800,035 - GFF810 0.80 +0.3 800,035 - GFF810 0.80 -0.6 800,035 - GFF810 0.80 +0.7 800,035 - GFF810 0.80 +0.3 800,104 + GFF810 0.85 -1.6 800,159 + GFF810 0.89 -1.2 800,159 + GFF810 0.89 -0.7 800,159 + GFF810 0.89 +0.4 800,164 + GFF810 0.90 +1.3 800,167 - -0.8 800,167 - +0.9 800,170 + +0.6 800,201 - +0.4 800,238 + -0.1 800,289 + +0.1 800,289 + -0.1 800,289 + -1.5 800,289 + +0.4 800,291 + -1.0 800,291 + -0.6 800,297 - -1.4 800,322 + GFF811 0.11 -0.7 800,349 + GFF811 0.15 +0.4 800,349 + GFF811 0.15 +0.1 800,350 - GFF811 0.16 -1.8 800,350 - GFF811 0.16 -0.1 800,355 + GFF811 0.16 -1.7 800,355 + GFF811 0.16 -0.1 800,359 + GFF811 0.17 -1.7 800,367 - GFF811 0.19 -0.4 800,386 - GFF811 0.22 -0.8 800,402 - GFF811 0.25 -1.4 800,402 - GFF811 0.25 +1.1 800,402 - GFF811 0.25 -0.4 800,468 - GFF811 0.36 +0.0 800,468 - GFF811 0.36 +2.0 800,490 - GFF811 0.40 -1.6 800,580 - GFF811 0.56 -0.3 800,643 + GFF811 0.67 -0.6 800,662 + GFF811 0.70 +1.3 800,678 - GFF811 0.73 -1.5 800,704 + GFF811 0.78 +0.2 800,714 + GFF811 0.79 -0.3 800,717 - GFF811 0.80 -2.1 800,719 + GFF811 0.80 +1.1 800,727 + GFF811 0.82 -1.2 800,727 - GFF811 0.82 +0.7 800,739 - GFF811 0.84 -1.0 800,748 - GFF811 0.85 -1.1 800,748 - GFF811 0.85 +1.0 800,748 - GFF811 0.85 -1.1 800,748 - GFF811 0.85 +0.2 800,778 - -1.2 800,778 - +0.6 800,802 - +0.3 800,826 + -1.0 800,836 + -1.8 800,838 + +0.1 800,867 - -0.1 800,883 + +1.6 800,883 + +0.6 800,993 + +1.6 800,993 + +3.6 800,999 - -2.0 801,006 + +0.7 801,011 + -1.0 801,011 + +0.2 801,011 + +1.1 801,011 + +1.8 801,011 + +0.6 801,019 - -2.1 801,024 - -1.4 801,027 + +0.0 801,029 - +1.2 801,095 + GFF812 0.12 +0.6 801,095 + GFF812 0.12 +0.7 801,095 + GFF812 0.12 -1.0 801,103 - GFF812 0.13 -1.3 801,123 - GFF812 0.15 +0.3 801,125 - GFF812 0.15 -1.4 801,130 - GFF812 0.15 -1.3 801,169 - GFF812 0.20 -1.9 801,169 - GFF812 0.20 +0.1 801,169 - GFF812 0.20 +0.7 801,229 - GFF812 0.26 -0.8 801,237 - GFF812 0.27 +0.5 801,254 - GFF812 0.29 +0.7 801,254 - GFF812 0.29 +0.9 801,272 - GFF812 0.31 -0.5
Or see this region's nucleotide sequence