Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF803 and GFF804 are separated by 27 nucleotides GFF804 and GFF805 overlap by 4 nucleotides GFF805 and GFF806 are separated by 56 nucleotides
GFF803 - Chorismate synthase (EC 4.2.3.5), at 791,856 to 792,929
GFF803
GFF804 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 792,957 to 793,763
GFF804
GFF805 - Ribonuclease BN, at 793,760 to 794,683
GFF805
GFF806 - DnaJ-class molecular chaperone CbpA, at 794,740 to 795,660
GFF806
Position (kb) 793
794
795 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 792.760 kb on + strand, within GFF803 at 792.767 kb on + strand, within GFF803 at 792.768 kb on - strand, within GFF803 at 792.768 kb on - strand, within GFF803 at 792.791 kb on + strand, within GFF803 at 792.791 kb on + strand, within GFF803 at 792.791 kb on + strand, within GFF803 at 792.799 kb on - strand, within GFF803 at 792.799 kb on - strand, within GFF803 at 792.799 kb on - strand, within GFF803 at 792.804 kb on - strand, within GFF803 at 792.804 kb on - strand, within GFF803 at 792.804 kb on - strand, within GFF803 at 792.809 kb on - strand, within GFF803 at 792.839 kb on - strand at 792.843 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.932 kb on - strand at 792.932 kb on - strand at 792.932 kb on - strand at 792.932 kb on - strand at 792.932 kb on - strand at 792.942 kb on - strand at 792.958 kb on + strand at 792.958 kb on + strand at 792.958 kb on + strand at 792.958 kb on + strand at 792.961 kb on - strand at 792.966 kb on - strand at 792.966 kb on - strand at 792.966 kb on - strand at 792.966 kb on - strand at 792.966 kb on - strand at 792.985 kb on + strand at 793.015 kb on - strand at 793.027 kb on + strand at 793.027 kb on + strand at 793.027 kb on + strand at 793.033 kb on + strand at 793.092 kb on - strand, within GFF804 at 793.273 kb on + strand, within GFF804 at 793.293 kb on - strand, within GFF804 at 793.293 kb on - strand, within GFF804 at 793.324 kb on + strand, within GFF804 at 793.343 kb on - strand, within GFF804 at 793.393 kb on + strand, within GFF804 at 793.395 kb on + strand, within GFF804 at 793.403 kb on - strand, within GFF804 at 793.456 kb on - strand, within GFF804 at 793.463 kb on + strand, within GFF804 at 793.488 kb on + strand, within GFF804 at 793.503 kb on - strand, within GFF804 at 793.522 kb on + strand, within GFF804 at 793.568 kb on - strand, within GFF804 at 793.587 kb on - strand, within GFF804 at 793.621 kb on + strand, within GFF804 at 793.629 kb on - strand, within GFF804 at 793.632 kb on + strand, within GFF804 at 793.635 kb on - strand, within GFF804 at 793.648 kb on + strand, within GFF804 at 793.651 kb on - strand, within GFF804 at 793.653 kb on + strand, within GFF804 at 793.658 kb on + strand, within GFF804 at 793.666 kb on - strand, within GFF804 at 793.695 kb on - strand at 793.757 kb on + strand at 793.767 kb on - strand at 793.784 kb on + strand at 793.787 kb on - strand at 793.787 kb on - strand at 793.792 kb on - strand at 793.792 kb on - strand at 793.792 kb on - strand at 793.797 kb on - strand at 793.899 kb on + strand, within GFF805 at 793.913 kb on + strand, within GFF805 at 793.919 kb on + strand, within GFF805 at 793.921 kb on - strand, within GFF805 at 793.942 kb on + strand, within GFF805 at 794.026 kb on + strand, within GFF805 at 794.039 kb on - strand, within GFF805 at 794.048 kb on + strand, within GFF805 at 794.050 kb on + strand, within GFF805 at 794.050 kb on + strand, within GFF805 at 794.062 kb on - strand, within GFF805 at 794.141 kb on + strand, within GFF805 at 794.141 kb on + strand, within GFF805 at 794.141 kb on + strand, within GFF805 at 794.149 kb on - strand, within GFF805 at 794.149 kb on - strand, within GFF805 at 794.151 kb on + strand, within GFF805 at 794.160 kb on + strand, within GFF805 at 794.165 kb on + strand, within GFF805 at 794.217 kb on + strand, within GFF805 at 794.217 kb on + strand, within GFF805 at 794.217 kb on + strand, within GFF805 at 794.217 kb on + strand, within GFF805 at 794.217 kb on + strand, within GFF805 at 794.220 kb on - strand, within GFF805 at 794.225 kb on - strand, within GFF805 at 794.225 kb on - strand, within GFF805 at 794.227 kb on + strand, within GFF805 at 794.227 kb on + strand, within GFF805 at 794.227 kb on + strand, within GFF805 at 794.230 kb on - strand, within GFF805 at 794.231 kb on + strand, within GFF805 at 794.235 kb on - strand, within GFF805 at 794.235 kb on - strand, within GFF805 at 794.256 kb on + strand, within GFF805 at 794.264 kb on - strand, within GFF805 at 794.264 kb on - strand, within GFF805 at 794.264 kb on - strand, within GFF805 at 794.264 kb on - strand, within GFF805 at 794.273 kb on - strand, within GFF805 at 794.294 kb on + strand, within GFF805 at 794.302 kb on - strand, within GFF805 at 794.313 kb on + strand, within GFF805 at 794.313 kb on + strand, within GFF805 at 794.321 kb on - strand, within GFF805 at 794.334 kb on + strand, within GFF805 at 794.334 kb on + strand, within GFF805 at 794.334 kb on + strand, within GFF805 at 794.334 kb on + strand, within GFF805 at 794.334 kb on + strand, within GFF805 at 794.334 kb on + strand, within GFF805 at 794.339 kb on + strand, within GFF805 at 794.342 kb on - strand, within GFF805 at 794.342 kb on - strand, within GFF805 at 794.342 kb on - strand, within GFF805 at 794.342 kb on - strand, within GFF805 at 794.342 kb on - strand, within GFF805 at 794.342 kb on - strand, within GFF805 at 794.358 kb on + strand, within GFF805 at 794.402 kb on - strand, within GFF805 at 794.408 kb on + strand, within GFF805 at 794.408 kb on + strand, within GFF805 at 794.422 kb on - strand, within GFF805 at 794.427 kb on - strand, within GFF805 at 794.427 kb on - strand, within GFF805 at 794.442 kb on - strand, within GFF805 at 794.447 kb on - strand, within GFF805 at 794.447 kb on - strand, within GFF805 at 794.447 kb on - strand, within GFF805 at 794.447 kb on - strand, within GFF805 at 794.524 kb on - strand, within GFF805 at 794.539 kb on + strand, within GFF805 at 794.552 kb on - strand, within GFF805 at 794.601 kb on - strand at 794.601 kb on - strand at 794.619 kb on - strand at 794.629 kb on - strand at 794.639 kb on - strand at 794.639 kb on - strand at 794.644 kb on - strand at 794.679 kb on + strand at 794.703 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.755 kb on + strand at 794.763 kb on - strand at 794.763 kb on - strand at 794.783 kb on + strand at 794.783 kb on + strand at 794.791 kb on - strand at 794.793 kb on + strand at 794.793 kb on + strand at 794.793 kb on + strand at 794.800 kb on - strand at 794.822 kb on + strand at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.854 kb on + strand, within GFF806 at 794.859 kb on + strand, within GFF806 at 794.867 kb on - strand, within GFF806 at 794.892 kb on + strand, within GFF806 at 794.893 kb on + strand, within GFF806 at 794.905 kb on + strand, within GFF806 at 794.915 kb on + strand, within GFF806 at 794.918 kb on - strand, within GFF806 at 794.932 kb on + strand, within GFF806 at 794.937 kb on - strand, within GFF806 at 794.940 kb on - strand, within GFF806 at 794.942 kb on - strand, within GFF806 at 794.942 kb on - strand, within GFF806 at 794.954 kb on + strand, within GFF806 at 794.960 kb on + strand, within GFF806 at 794.968 kb on - strand, within GFF806 at 794.968 kb on - strand, within GFF806 at 794.969 kb on + strand, within GFF806 at 794.974 kb on + strand, within GFF806 at 794.983 kb on - strand, within GFF806 at 795.046 kb on - strand, within GFF806 at 795.064 kb on + strand, within GFF806 at 795.065 kb on - strand, within GFF806 at 795.097 kb on + strand, within GFF806 at 795.105 kb on - strand, within GFF806 at 795.141 kb on - strand, within GFF806 at 795.153 kb on + strand, within GFF806 at 795.161 kb on - strand, within GFF806 at 795.161 kb on - strand, within GFF806 at 795.178 kb on + strand, within GFF806 at 795.186 kb on - strand, within GFF806 at 795.191 kb on - strand, within GFF806 at 795.191 kb on - strand, within GFF806 at 795.193 kb on - strand, within GFF806 at 795.193 kb on - strand, within GFF806 at 795.231 kb on - strand, within GFF806 at 795.242 kb on - strand, within GFF806 at 795.429 kb on - strand, within GFF806 at 795.455 kb on + strand, within GFF806 at 795.470 kb on + strand, within GFF806 at 795.487 kb on - strand, within GFF806 at 795.509 kb on - strand, within GFF806 at 795.509 kb on - strand, within GFF806 at 795.577 kb on - strand at 795.583 kb on - strand at 795.585 kb on + strand at 795.599 kb on + strand at 795.599 kb on + strand at 795.599 kb on + strand at 795.601 kb on + strand at 795.607 kb on - strand at 795.607 kb on - strand at 795.627 kb on + strand at 795.627 kb on + strand at 795.639 kb on + strand at 795.649 kb on - strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.663 kb on + strand at 795.669 kb on + strand at 795.669 kb on - strand at 795.671 kb on + strand at 795.682 kb on - strand at 795.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 792,760 + GFF803 0.84 +0.8 792,767 + GFF803 0.85 +1.0 792,768 - GFF803 0.85 +1.6 792,768 - GFF803 0.85 -1.2 792,791 + GFF803 0.87 -0.3 792,791 + GFF803 0.87 +0.1 792,791 + GFF803 0.87 +0.5 792,799 - GFF803 0.88 -1.1 792,799 - GFF803 0.88 +0.8 792,799 - GFF803 0.88 -0.1 792,804 - GFF803 0.88 +0.6 792,804 - GFF803 0.88 +0.8 792,804 - GFF803 0.88 -1.5 792,809 - GFF803 0.89 -1.0 792,839 - -0.1 792,843 + +1.6 792,924 + +0.6 792,924 + -1.9 792,924 + -1.4 792,924 + -0.4 792,924 + -1.0 792,924 + -0.2 792,932 - -1.0 792,932 - -1.0 792,932 - -0.8 792,932 - +0.2 792,932 - -0.8 792,942 - -0.5 792,958 + +0.4 792,958 + +0.2 792,958 + -0.6 792,958 + +1.2 792,961 - -0.3 792,966 - +0.3 792,966 - -1.2 792,966 - -1.4 792,966 - -1.1 792,966 - -0.7 792,985 + -1.4 793,015 - -0.9 793,027 + -1.4 793,027 + -1.0 793,027 + +1.6 793,033 + +0.6 793,092 - GFF804 0.17 -1.0 793,273 + GFF804 0.39 -1.6 793,293 - GFF804 0.42 +0.4 793,293 - GFF804 0.42 +0.4 793,324 + GFF804 0.45 +1.6 793,343 - GFF804 0.48 -0.3 793,393 + GFF804 0.54 -1.1 793,395 + GFF804 0.54 +0.2 793,403 - GFF804 0.55 +0.7 793,456 - GFF804 0.62 -0.7 793,463 + GFF804 0.63 +0.2 793,488 + GFF804 0.66 +1.2 793,503 - GFF804 0.68 -0.4 793,522 + GFF804 0.70 -1.3 793,568 - GFF804 0.76 -0.3 793,587 - GFF804 0.78 +0.1 793,621 + GFF804 0.82 -0.9 793,629 - GFF804 0.83 -1.7 793,632 + GFF804 0.84 +0.6 793,635 - GFF804 0.84 -1.0 793,648 + GFF804 0.86 -0.4 793,651 - GFF804 0.86 +1.6 793,653 + GFF804 0.86 -0.8 793,658 + GFF804 0.87 -1.4 793,666 - GFF804 0.88 +0.1 793,695 - -0.8 793,757 + +0.2 793,767 - -0.0 793,784 + -1.3 793,787 - -0.8 793,787 - -0.6 793,792 - -1.4 793,792 - -0.4 793,792 - -0.4 793,797 - -0.2 793,899 + GFF805 0.15 +0.2 793,913 + GFF805 0.17 +0.6 793,919 + GFF805 0.17 -0.4 793,921 - GFF805 0.17 +1.6 793,942 + GFF805 0.20 +2.1 794,026 + GFF805 0.29 -1.3 794,039 - GFF805 0.30 +1.2 794,048 + GFF805 0.31 -1.1 794,050 + GFF805 0.31 -2.0 794,050 + GFF805 0.31 -1.3 794,062 - GFF805 0.33 -1.0 794,141 + GFF805 0.41 -0.4 794,141 + GFF805 0.41 +1.4 794,141 + GFF805 0.41 -0.4 794,149 - GFF805 0.42 -0.5 794,149 - GFF805 0.42 +0.9 794,151 + GFF805 0.42 -0.8 794,160 + GFF805 0.43 +0.1 794,165 + GFF805 0.44 +0.1 794,217 + GFF805 0.49 +0.8 794,217 + GFF805 0.49 +1.2 794,217 + GFF805 0.49 -0.8 794,217 + GFF805 0.49 -1.3 794,217 + GFF805 0.49 -0.4 794,220 - GFF805 0.50 -0.5 794,225 - GFF805 0.50 -0.2 794,225 - GFF805 0.50 -0.1 794,227 + GFF805 0.51 +1.9 794,227 + GFF805 0.51 -1.5 794,227 + GFF805 0.51 +0.5 794,230 - GFF805 0.51 +0.4 794,231 + GFF805 0.51 -0.2 794,235 - GFF805 0.51 -0.7 794,235 - GFF805 0.51 +1.6 794,256 + GFF805 0.54 -0.4 794,264 - GFF805 0.55 +0.6 794,264 - GFF805 0.55 -0.8 794,264 - GFF805 0.55 -1.0 794,264 - GFF805 0.55 -1.1 794,273 - GFF805 0.56 +0.3 794,294 + GFF805 0.58 -1.8 794,302 - GFF805 0.59 +0.9 794,313 + GFF805 0.60 -0.8 794,313 + GFF805 0.60 +1.1 794,321 - GFF805 0.61 -1.4 794,334 + GFF805 0.62 +0.3 794,334 + GFF805 0.62 -0.4 794,334 + GFF805 0.62 +0.8 794,334 + GFF805 0.62 -0.4 794,334 + GFF805 0.62 +0.9 794,334 + GFF805 0.62 +0.4 794,339 + GFF805 0.63 +0.4 794,342 - GFF805 0.63 +1.1 794,342 - GFF805 0.63 -0.4 794,342 - GFF805 0.63 +1.0 794,342 - GFF805 0.63 +0.8 794,342 - GFF805 0.63 -0.3 794,342 - GFF805 0.63 +0.7 794,358 + GFF805 0.65 +1.2 794,402 - GFF805 0.69 +0.7 794,408 + GFF805 0.70 -1.4 794,408 + GFF805 0.70 +0.7 794,422 - GFF805 0.72 -0.6 794,427 - GFF805 0.72 -1.2 794,427 - GFF805 0.72 -0.6 794,442 - GFF805 0.74 -0.3 794,447 - GFF805 0.74 +0.6 794,447 - GFF805 0.74 -0.0 794,447 - GFF805 0.74 +0.4 794,447 - GFF805 0.74 -0.5 794,524 - GFF805 0.83 +0.8 794,539 + GFF805 0.84 +0.9 794,552 - GFF805 0.86 -0.2 794,601 - -0.4 794,601 - +1.1 794,619 - -1.4 794,629 - -0.4 794,639 - +0.1 794,639 - -0.4 794,644 - +0.3 794,679 + -0.2 794,703 + -0.0 794,755 + +0.1 794,755 + -1.3 794,755 + -0.0 794,755 + +2.2 794,755 + +0.1 794,755 + +0.2 794,755 + -1.0 794,755 + +1.2 794,755 + +0.7 794,755 + -0.3 794,755 + -0.6 794,755 + -0.3 794,755 + -0.1 794,755 + +0.2 794,755 + -0.6 794,763 - +0.7 794,763 - +3.0 794,783 + -1.0 794,783 + -0.8 794,791 - -0.0 794,793 + -0.6 794,793 + +0.0 794,793 + +0.5 794,800 - +0.3 794,822 + -0.2 794,837 + GFF806 0.11 +0.5 794,837 + GFF806 0.11 -1.2 794,837 + GFF806 0.11 -0.7 794,837 + GFF806 0.11 -0.8 794,837 + GFF806 0.11 -0.8 794,837 + GFF806 0.11 +1.0 794,837 + GFF806 0.11 -1.5 794,845 - GFF806 0.11 -2.1 794,845 - GFF806 0.11 -0.1 794,845 - GFF806 0.11 -0.4 794,845 - GFF806 0.11 +0.3 794,845 - GFF806 0.11 +0.8 794,845 - GFF806 0.11 +1.5 794,854 + GFF806 0.12 -1.4 794,859 + GFF806 0.13 -0.5 794,867 - GFF806 0.14 +0.6 794,892 + GFF806 0.17 -0.5 794,893 + GFF806 0.17 -1.3 794,905 + GFF806 0.18 +1.0 794,915 + GFF806 0.19 -0.8 794,918 - GFF806 0.19 +0.1 794,932 + GFF806 0.21 +0.6 794,937 - GFF806 0.21 -0.1 794,940 - GFF806 0.22 -0.9 794,942 - GFF806 0.22 +0.8 794,942 - GFF806 0.22 -1.1 794,954 + GFF806 0.23 +1.0 794,960 + GFF806 0.24 -0.4 794,968 - GFF806 0.25 -1.4 794,968 - GFF806 0.25 -0.3 794,969 + GFF806 0.25 -1.4 794,974 + GFF806 0.25 +0.6 794,983 - GFF806 0.26 +1.5 795,046 - GFF806 0.33 -1.0 795,064 + GFF806 0.35 -1.4 795,065 - GFF806 0.35 -1.3 795,097 + GFF806 0.39 +0.1 795,105 - GFF806 0.40 +1.3 795,141 - GFF806 0.44 +0.4 795,153 + GFF806 0.45 +0.2 795,161 - GFF806 0.46 +0.4 795,161 - GFF806 0.46 +0.3 795,178 + GFF806 0.48 -1.0 795,186 - GFF806 0.48 -0.3 795,191 - GFF806 0.49 +1.2 795,191 - GFF806 0.49 +0.6 795,193 - GFF806 0.49 +2.4 795,193 - GFF806 0.49 +0.1 795,231 - GFF806 0.53 +0.8 795,242 - GFF806 0.55 -0.1 795,429 - GFF806 0.75 -0.2 795,455 + GFF806 0.78 -0.1 795,470 + GFF806 0.79 +0.9 795,487 - GFF806 0.81 +0.1 795,509 - GFF806 0.83 +0.4 795,509 - GFF806 0.83 +1.0 795,577 - -0.8 795,583 - +0.6 795,585 + -0.1 795,599 + +2.3 795,599 + +0.7 795,599 + +1.0 795,601 + -0.2 795,607 - -0.3 795,607 - -0.6 795,627 + -2.1 795,627 + +1.4 795,639 + -0.5 795,649 - +0.4 795,661 + -0.8 795,661 + -0.7 795,661 + -0.4 795,663 + +1.7 795,669 + +0.8 795,669 - -0.6 795,671 + +0.1 795,682 - +0.1 795,682 - -0.2
Or see this region's nucleotide sequence