Strain Fitness in Sphingobium sp. HT1-2 around GFF720

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF718 and GFF719 are separated by 52 nucleotidesGFF719 and GFF720 are separated by 326 nucleotidesGFF720 and GFF721 are separated by 263 nucleotidesGFF721 and GFF722 overlap by 4 nucleotides GFF718 - hypothetical protein, at 711,154 to 711,576 GFF718 GFF719 - hypothetical protein, at 711,629 to 712,138 GFF719 GFF720 - outer membrane protein-like, at 712,465 to 713,025 GFF720 GFF721 - Thiosulfate reductase cytochrome B subunit (membrane anchoring protein), at 713,289 to 714,005 GFF721 GFF722 - probable sufite oxidase (EC 1.8.3.1), at 714,002 to 714,748 GFF722 Position (kb) 712 713 714Strain fitness (log2 ratio) -2 -1 0 1 2 3at 711.480 kb on + strand, within GFF718at 711.480 kb on - strand, within GFF718at 711.481 kb on + strand, within GFF718at 711.607 kb on + strandat 711.758 kb on + strand, within GFF719at 711.812 kb on + strand, within GFF719at 712.010 kb on + strand, within GFF719at 712.028 kb on + strand, within GFF719at 712.053 kb on + strand, within GFF719at 712.282 kb on - strandat 712.310 kb on - strandat 712.423 kb on - strandat 712.429 kb on + strandat 712.453 kb on + strandat 712.476 kb on + strandat 712.562 kb on - strand, within GFF720at 712.590 kb on + strand, within GFF720at 712.616 kb on + strand, within GFF720at 712.660 kb on - strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.684 kb on + strand, within GFF720at 712.685 kb on + strand, within GFF720at 712.698 kb on - strand, within GFF720at 712.740 kb on + strand, within GFF720at 712.750 kb on + strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.782 kb on - strand, within GFF720at 712.818 kb on + strand, within GFF720at 712.826 kb on - strand, within GFF720at 712.833 kb on + strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.857 kb on + strand, within GFF720at 712.859 kb on + strand, within GFF720at 712.867 kb on - strand, within GFF720at 712.867 kb on - strand, within GFF720at 712.867 kb on - strand, within GFF720at 712.872 kb on - strand, within GFF720at 712.884 kb on - strand, within GFF720at 712.897 kb on - strand, within GFF720at 712.905 kb on + strand, within GFF720at 712.905 kb on + strand, within GFF720at 712.913 kb on - strand, within GFF720at 712.945 kb on - strand, within GFF720at 712.957 kb on - strand, within GFF720at 713.042 kb on - strandat 713.201 kb on - strandat 713.218 kb on + strandat 713.218 kb on + strandat 713.218 kb on + strandat 713.223 kb on + strandat 713.231 kb on - strandat 713.231 kb on - strandat 713.231 kb on - strandat 713.231 kb on - strandat 713.232 kb on - strandat 713.268 kb on + strandat 713.276 kb on - strandat 713.287 kb on - strandat 713.298 kb on + strandat 713.305 kb on + strandat 713.307 kb on + strandat 713.307 kb on + strandat 713.310 kb on + strandat 713.349 kb on - strandat 713.362 kb on + strand, within GFF721at 713.364 kb on - strand, within GFF721at 713.364 kb on - strand, within GFF721at 713.364 kb on - strand, within GFF721at 713.382 kb on + strand, within GFF721at 713.389 kb on + strand, within GFF721at 713.389 kb on + strand, within GFF721at 713.389 kb on + strand, within GFF721at 713.413 kb on - strand, within GFF721at 713.426 kb on + strand, within GFF721at 713.426 kb on + strand, within GFF721at 713.428 kb on + strand, within GFF721at 713.431 kb on - strand, within GFF721at 713.446 kb on - strand, within GFF721at 713.462 kb on - strand, within GFF721at 713.472 kb on - strand, within GFF721at 713.477 kb on - strand, within GFF721at 713.491 kb on + strand, within GFF721at 713.491 kb on + strand, within GFF721at 713.499 kb on - strand, within GFF721at 713.518 kb on - strand, within GFF721at 713.518 kb on - strand, within GFF721at 713.518 kb on - strand, within GFF721at 713.520 kb on + strand, within GFF721at 713.533 kb on + strand, within GFF721at 713.533 kb on - strand, within GFF721at 713.541 kb on - strand, within GFF721at 713.585 kb on + strand, within GFF721at 713.593 kb on - strand, within GFF721at 713.593 kb on - strand, within GFF721at 713.674 kb on - strand, within GFF721at 713.674 kb on - strand, within GFF721at 713.717 kb on + strand, within GFF721at 713.717 kb on + strand, within GFF721at 713.717 kb on + strand, within GFF721at 713.719 kb on + strand, within GFF721at 713.725 kb on - strand, within GFF721at 713.727 kb on + strand, within GFF721at 713.727 kb on + strand, within GFF721at 713.727 kb on + strand, within GFF721at 713.727 kb on + strand, within GFF721at 713.735 kb on - strand, within GFF721at 713.742 kb on + strand, within GFF721at 713.754 kb on - strand, within GFF721at 713.761 kb on + strand, within GFF721at 713.761 kb on + strand, within GFF721at 713.789 kb on - strand, within GFF721at 713.791 kb on + strand, within GFF721at 713.791 kb on + strand, within GFF721at 713.798 kb on - strand, within GFF721at 713.799 kb on - strand, within GFF721at 713.828 kb on - strand, within GFF721at 713.832 kb on - strand, within GFF721at 713.832 kb on - strand, within GFF721at 713.832 kb on - strand, within GFF721at 713.843 kb on + strand, within GFF721at 713.887 kb on + strand, within GFF721at 713.895 kb on - strand, within GFF721at 713.928 kb on + strand, within GFF721at 713.977 kb on + strandat 713.988 kb on + strandat 713.995 kb on - strandat 713.996 kb on - strandat 714.005 kb on + strandat 714.005 kb on + strandat 714.015 kb on + strandat 714.023 kb on + strandat 714.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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711,480 + GFF718 0.77 -1.2
711,480 - GFF718 0.77 +0.0
711,481 + GFF718 0.77 -0.1
711,607 + +0.8
711,758 + GFF719 0.25 +1.5
711,812 + GFF719 0.36 +0.7
712,010 + GFF719 0.75 -1.0
712,028 + GFF719 0.78 -0.1
712,053 + GFF719 0.83 +0.1
712,282 - +2.4
712,310 - +1.1
712,423 - -2.2
712,429 + -0.6
712,453 + -1.8
712,476 + +0.1
712,562 - GFF720 0.17 +1.0
712,590 + GFF720 0.22 +0.0
712,616 + GFF720 0.27 -0.3
712,660 - GFF720 0.35 -1.0
712,669 + GFF720 0.36 +0.3
712,669 + GFF720 0.36 +0.1
712,669 + GFF720 0.36 +1.5
712,677 - GFF720 0.38 -0.5
712,677 - GFF720 0.38 -1.1
712,677 - GFF720 0.38 +0.4
712,677 - GFF720 0.38 +0.4
712,684 + GFF720 0.39 -0.2
712,685 + GFF720 0.39 -0.2
712,698 - GFF720 0.42 -0.1
712,740 + GFF720 0.49 -1.3
712,750 + GFF720 0.51 -0.4
712,759 - GFF720 0.52 -1.3
712,759 - GFF720 0.52 +0.3
712,759 - GFF720 0.52 +0.5
712,782 - GFF720 0.57 -0.0
712,818 + GFF720 0.63 +3.0
712,826 - GFF720 0.64 -1.1
712,833 + GFF720 0.66 -0.9
712,841 - GFF720 0.67 +0.7
712,841 - GFF720 0.67 -1.4
712,841 - GFF720 0.67 +0.1
712,857 + GFF720 0.70 -2.2
712,859 + GFF720 0.70 -0.5
712,867 - GFF720 0.72 -0.9
712,867 - GFF720 0.72 +0.1
712,867 - GFF720 0.72 +0.1
712,872 - GFF720 0.73 +0.1
712,884 - GFF720 0.75 +0.3
712,897 - GFF720 0.77 +0.3
712,905 + GFF720 0.78 -1.0
712,905 + GFF720 0.78 -0.5
712,913 - GFF720 0.80 -1.2
712,945 - GFF720 0.86 -0.3
712,957 - GFF720 0.88 +1.2
713,042 - -0.4
713,201 - -0.9
713,218 + +1.3
713,218 + -0.5
713,218 + -0.6
713,223 + -0.9
713,231 - -1.1
713,231 - -2.2
713,231 - +0.9
713,231 - +0.4
713,232 - -0.2
713,268 + -0.7
713,276 - -1.5
713,287 - -1.9
713,298 + -0.7
713,305 + -0.5
713,307 + -0.5
713,307 + +1.1
713,310 + -0.0
713,349 - +0.9
713,362 + GFF721 0.10 -0.5
713,364 - GFF721 0.10 +0.5
713,364 - GFF721 0.10 -0.9
713,364 - GFF721 0.10 -0.4
713,382 + GFF721 0.13 +0.5
713,389 + GFF721 0.14 +1.1
713,389 + GFF721 0.14 +0.4
713,389 + GFF721 0.14 +0.9
713,413 - GFF721 0.17 -0.8
713,426 + GFF721 0.19 -1.4
713,426 + GFF721 0.19 -1.2
713,428 + GFF721 0.19 -1.8
713,431 - GFF721 0.20 -0.6
713,446 - GFF721 0.22 +0.7
713,462 - GFF721 0.24 -0.4
713,472 - GFF721 0.26 -1.0
713,477 - GFF721 0.26 +0.2
713,491 + GFF721 0.28 -1.1
713,491 + GFF721 0.28 -1.2
713,499 - GFF721 0.29 +0.6
713,518 - GFF721 0.32 +0.0
713,518 - GFF721 0.32 -0.5
713,518 - GFF721 0.32 -1.4
713,520 + GFF721 0.32 +2.0
713,533 + GFF721 0.34 +1.7
713,533 - GFF721 0.34 -1.2
713,541 - GFF721 0.35 +0.6
713,585 + GFF721 0.41 -0.4
713,593 - GFF721 0.42 -0.1
713,593 - GFF721 0.42 +1.3
713,674 - GFF721 0.54 +1.5
713,674 - GFF721 0.54 +1.3
713,717 + GFF721 0.60 -0.5
713,717 + GFF721 0.60 +1.1
713,717 + GFF721 0.60 -0.6
713,719 + GFF721 0.60 +0.4
713,725 - GFF721 0.61 +0.9
713,727 + GFF721 0.61 -1.1
713,727 + GFF721 0.61 +1.7
713,727 + GFF721 0.61 -0.4
713,727 + GFF721 0.61 -2.2
713,735 - GFF721 0.62 -0.6
713,742 + GFF721 0.63 +0.3
713,754 - GFF721 0.65 -0.4
713,761 + GFF721 0.66 +0.5
713,761 + GFF721 0.66 +0.2
713,789 - GFF721 0.70 -0.3
713,791 + GFF721 0.70 -0.6
713,791 + GFF721 0.70 -0.5
713,798 - GFF721 0.71 -0.3
713,799 - GFF721 0.71 -0.5
713,828 - GFF721 0.75 -0.6
713,832 - GFF721 0.76 -1.6
713,832 - GFF721 0.76 +0.3
713,832 - GFF721 0.76 +1.3
713,843 + GFF721 0.77 -0.2
713,887 + GFF721 0.83 -1.7
713,895 - GFF721 0.85 -0.7
713,928 + GFF721 0.89 -0.5
713,977 + -0.6
713,988 + -1.0
713,995 - -1.0
713,996 - +0.8
714,005 + -1.6
714,005 + -1.0
714,015 + -1.9
714,023 + -0.8
714,023 - -0.6

Or see this region's nucleotide sequence