Strain Fitness in Sphingobium sp. HT1-2 around GFF71

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF69 and GFF70 are separated by 123 nucleotidesGFF70 and GFF71 are separated by 29 nucleotidesGFF71 and GFF72 overlap by 4 nucleotides GFF69 - putative PAS/PAC sensor protein, at 58,609 to 59,517 GFF69 GFF70 - hypothetical protein, at 59,641 to 59,862 GFF70 GFF71 - Succinylarginine dihydrolase (EC 3.5.3.23), at 59,892 to 61,151 GFF71 GFF72 - Arginine N-succinyltransferase (EC 2.3.1.109), at 61,148 to 62,155 GFF72 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 58.929 kb on + strand, within GFF69at 58.973 kb on - strand, within GFF69at 59.037 kb on + strand, within GFF69at 59.045 kb on - strand, within GFF69at 59.064 kb on - strand, within GFF69at 59.173 kb on - strand, within GFF69at 59.197 kb on - strand, within GFF69at 59.231 kb on + strand, within GFF69at 59.231 kb on + strand, within GFF69at 59.231 kb on + strand, within GFF69at 59.239 kb on - strand, within GFF69at 59.239 kb on - strand, within GFF69at 59.239 kb on - strand, within GFF69at 59.239 kb on - strand, within GFF69at 59.239 kb on - strand, within GFF69at 59.239 kb on - strand, within GFF69at 59.239 kb on - strand, within GFF69at 59.249 kb on + strand, within GFF69at 59.254 kb on + strand, within GFF69at 59.254 kb on + strand, within GFF69at 59.254 kb on + strand, within GFF69at 59.262 kb on - strand, within GFF69at 59.289 kb on - strand, within GFF69at 59.296 kb on - strand, within GFF69at 59.308 kb on - strand, within GFF69at 59.349 kb on + strand, within GFF69at 59.357 kb on - strand, within GFF69at 59.366 kb on + strand, within GFF69at 59.366 kb on + strand, within GFF69at 59.366 kb on + strand, within GFF69at 59.374 kb on - strand, within GFF69at 59.374 kb on - strand, within GFF69at 59.374 kb on - strand, within GFF69at 59.375 kb on - strand, within GFF69at 59.377 kb on + strand, within GFF69at 59.377 kb on + strand, within GFF69at 59.377 kb on + strand, within GFF69at 59.377 kb on + strand, within GFF69at 59.384 kb on - strand, within GFF69at 59.385 kb on - strand, within GFF69at 59.394 kb on - strand, within GFF69at 59.400 kb on - strand, within GFF69at 59.427 kb on - strandat 59.475 kb on + strandat 59.517 kb on + strandat 59.518 kb on + strandat 59.526 kb on - strandat 59.526 kb on - strandat 59.526 kb on - strandat 59.526 kb on - strandat 59.526 kb on - strandat 59.556 kb on - strandat 59.640 kb on + strandat 59.736 kb on - strand, within GFF70at 59.767 kb on - strand, within GFF70at 59.846 kb on + strandat 59.859 kb on + strandat 59.897 kb on + strandat 59.933 kb on + strandat 59.982 kb on + strandat 60.004 kb on + strandat 60.020 kb on - strand, within GFF71at 60.068 kb on + strand, within GFF71at 60.101 kb on + strand, within GFF71at 60.101 kb on + strand, within GFF71at 60.104 kb on - strand, within GFF71at 60.194 kb on + strand, within GFF71at 60.194 kb on + strand, within GFF71at 60.194 kb on + strand, within GFF71at 60.199 kb on + strand, within GFF71at 60.199 kb on + strand, within GFF71at 60.199 kb on + strand, within GFF71at 60.202 kb on - strand, within GFF71at 60.202 kb on - strand, within GFF71at 60.202 kb on - strand, within GFF71at 60.202 kb on - strand, within GFF71at 60.202 kb on - strand, within GFF71at 60.207 kb on - strand, within GFF71at 60.207 kb on - strand, within GFF71at 60.208 kb on + strand, within GFF71at 60.212 kb on - strand, within GFF71at 60.221 kb on - strand, within GFF71at 60.223 kb on + strand, within GFF71at 60.240 kb on - strand, within GFF71at 60.242 kb on + strand, within GFF71at 60.246 kb on - strand, within GFF71at 60.251 kb on - strand, within GFF71at 60.317 kb on + strand, within GFF71at 60.317 kb on + strand, within GFF71at 60.338 kb on - strand, within GFF71at 60.363 kb on - strand, within GFF71at 60.365 kb on - strand, within GFF71at 60.390 kb on - strand, within GFF71at 60.400 kb on + strand, within GFF71at 60.408 kb on - strand, within GFF71at 60.417 kb on + strand, within GFF71at 60.418 kb on - strand, within GFF71at 60.459 kb on + strand, within GFF71at 60.521 kb on - strand, within GFF71at 60.544 kb on + strand, within GFF71at 60.583 kb on - strand, within GFF71at 60.706 kb on - strand, within GFF71at 60.745 kb on + strand, within GFF71at 60.750 kb on + strand, within GFF71at 60.755 kb on + strand, within GFF71at 60.795 kb on + strand, within GFF71at 60.795 kb on + strand, within GFF71at 60.914 kb on + strand, within GFF71at 60.921 kb on + strand, within GFF71at 60.921 kb on + strand, within GFF71at 60.921 kb on + strand, within GFF71at 60.929 kb on - strand, within GFF71at 61.023 kb on - strand, within GFF71at 61.041 kb on + strandat 61.041 kb on + strandat 61.049 kb on - strandat 61.056 kb on + strandat 61.085 kb on + strandat 61.123 kb on - strandat 61.147 kb on + strandat 61.155 kb on - strandat 61.188 kb on + strandat 61.196 kb on - strandat 61.196 kb on - strandat 61.241 kb on + strandat 61.241 kb on + strandat 61.249 kb on - strand, within GFF72at 61.249 kb on - strand, within GFF72at 61.249 kb on - strand, within GFF72at 61.249 kb on - strand, within GFF72at 61.249 kb on - strand, within GFF72at 61.249 kb on - strand, within GFF72at 61.251 kb on - strand, within GFF72at 61.251 kb on - strand, within GFF72at 61.252 kb on + strand, within GFF72at 61.253 kb on + strand, within GFF72at 61.260 kb on - strand, within GFF72at 61.261 kb on - strand, within GFF72at 61.261 kb on - strand, within GFF72at 61.287 kb on + strand, within GFF72at 61.295 kb on - strand, within GFF72at 61.316 kb on + strand, within GFF72at 61.333 kb on + strand, within GFF72at 61.333 kb on + strand, within GFF72at 61.359 kb on + strand, within GFF72at 61.359 kb on + strand, within GFF72at 61.359 kb on + strand, within GFF72at 61.359 kb on + strand, within GFF72at 61.359 kb on + strand, within GFF72at 61.359 kb on + strand, within GFF72at 61.360 kb on - strand, within GFF72at 61.367 kb on - strand, within GFF72at 61.367 kb on - strand, within GFF72at 61.367 kb on - strand, within GFF72at 61.367 kb on - strand, within GFF72at 61.367 kb on - strand, within GFF72at 61.367 kb on - strand, within GFF72at 61.367 kb on - strand, within GFF72at 61.367 kb on - strand, within GFF72at 61.367 kb on - strand, within GFF72at 61.378 kb on + strand, within GFF72at 61.382 kb on - strand, within GFF72at 61.427 kb on + strand, within GFF72at 61.448 kb on - strand, within GFF72at 61.459 kb on - strand, within GFF72at 61.473 kb on + strand, within GFF72at 61.473 kb on + strand, within GFF72at 61.476 kb on - strand, within GFF72at 61.486 kb on - strand, within GFF72at 61.513 kb on + strand, within GFF72at 61.513 kb on + strand, within GFF72at 61.514 kb on - strand, within GFF72at 61.521 kb on - strand, within GFF72at 61.521 kb on - strand, within GFF72at 61.521 kb on - strand, within GFF72at 61.529 kb on - strand, within GFF72at 61.529 kb on - strand, within GFF72at 61.559 kb on - strand, within GFF72at 61.559 kb on - strand, within GFF72at 61.575 kb on + strand, within GFF72at 61.583 kb on - strand, within GFF72at 61.583 kb on - strand, within GFF72at 61.583 kb on - strand, within GFF72at 61.621 kb on + strand, within GFF72at 61.670 kb on + strand, within GFF72at 61.675 kb on + strand, within GFF72at 61.675 kb on + strand, within GFF72at 61.675 kb on + strand, within GFF72at 61.711 kb on + strand, within GFF72at 61.720 kb on + strand, within GFF72at 61.726 kb on - strand, within GFF72at 61.749 kb on + strand, within GFF72at 61.750 kb on + strand, within GFF72at 61.758 kb on - strand, within GFF72at 61.770 kb on - strand, within GFF72at 61.777 kb on + strand, within GFF72at 61.816 kb on + strand, within GFF72at 61.851 kb on + strand, within GFF72at 61.851 kb on + strand, within GFF72at 61.859 kb on - strand, within GFF72at 61.859 kb on - strand, within GFF72at 61.869 kb on - strand, within GFF72at 61.899 kb on + strand, within GFF72at 61.899 kb on + strand, within GFF72at 61.899 kb on - strand, within GFF72at 61.899 kb on - strand, within GFF72at 61.907 kb on - strand, within GFF72at 61.908 kb on + strand, within GFF72at 61.908 kb on + strand, within GFF72at 61.913 kb on + strand, within GFF72at 61.921 kb on - strand, within GFF72at 61.924 kb on - strand, within GFF72at 61.934 kb on - strand, within GFF72at 61.942 kb on - strand, within GFF72at 61.942 kb on - strand, within GFF72at 61.968 kb on + strand, within GFF72at 61.968 kb on + strand, within GFF72at 61.986 kb on - strand, within GFF72at 61.993 kb on + strand, within GFF72at 61.993 kb on + strand, within GFF72at 61.998 kb on + strand, within GFF72at 61.998 kb on + strand, within GFF72at 62.007 kb on + strand, within GFF72at 62.015 kb on - strand, within GFF72at 62.032 kb on + strand, within GFF72at 62.032 kb on + strand, within GFF72at 62.040 kb on - strand, within GFF72at 62.081 kb on - strandat 62.085 kb on - strandat 62.092 kb on - strandat 62.092 kb on - strandat 62.114 kb on + strandat 62.129 kb on - strandat 62.148 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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58,929 + GFF69 0.35 -0.6
58,973 - GFF69 0.40 -0.6
59,037 + GFF69 0.47 -0.2
59,045 - GFF69 0.48 -1.3
59,064 - GFF69 0.50 +0.7
59,173 - GFF69 0.62 -1.5
59,197 - GFF69 0.65 -0.2
59,231 + GFF69 0.68 +1.2
59,231 + GFF69 0.68 +0.7
59,231 + GFF69 0.68 +0.7
59,239 - GFF69 0.69 -0.0
59,239 - GFF69 0.69 -1.1
59,239 - GFF69 0.69 -1.5
59,239 - GFF69 0.69 -2.0
59,239 - GFF69 0.69 -0.2
59,239 - GFF69 0.69 +1.0
59,239 - GFF69 0.69 +2.5
59,249 + GFF69 0.70 -0.0
59,254 + GFF69 0.71 +0.4
59,254 + GFF69 0.71 -0.1
59,254 + GFF69 0.71 -0.1
59,262 - GFF69 0.72 -0.0
59,289 - GFF69 0.75 +0.4
59,296 - GFF69 0.76 -0.3
59,308 - GFF69 0.77 +1.5
59,349 + GFF69 0.81 -0.3
59,357 - GFF69 0.82 +0.9
59,366 + GFF69 0.83 +0.4
59,366 + GFF69 0.83 -0.9
59,366 + GFF69 0.83 -1.5
59,374 - GFF69 0.84 +0.9
59,374 - GFF69 0.84 +0.1
59,374 - GFF69 0.84 +1.0
59,375 - GFF69 0.84 +0.4
59,377 + GFF69 0.84 -0.3
59,377 + GFF69 0.84 +1.7
59,377 + GFF69 0.84 +0.7
59,377 + GFF69 0.84 +0.2
59,384 - GFF69 0.85 +0.5
59,385 - GFF69 0.85 +1.8
59,394 - GFF69 0.86 -1.6
59,400 - GFF69 0.87 -0.0
59,427 - +0.1
59,475 + -0.4
59,517 + -0.5
59,518 + +0.7
59,526 - +1.4
59,526 - +1.7
59,526 - -0.7
59,526 - -0.7
59,526 - +0.5
59,556 - +0.2
59,640 + -1.5
59,736 - GFF70 0.43 +0.2
59,767 - GFF70 0.57 +0.7
59,846 + -0.6
59,859 + +0.4
59,897 + -0.1
59,933 + +1.8
59,982 + +1.4
60,004 + +1.0
60,020 - GFF71 0.10 +1.4
60,068 + GFF71 0.14 -0.0
60,101 + GFF71 0.17 +0.3
60,101 + GFF71 0.17 +0.7
60,104 - GFF71 0.17 +0.2
60,194 + GFF71 0.24 +0.6
60,194 + GFF71 0.24 +1.1
60,194 + GFF71 0.24 -0.1
60,199 + GFF71 0.24 -0.3
60,199 + GFF71 0.24 -0.5
60,199 + GFF71 0.24 -1.9
60,202 - GFF71 0.25 -0.1
60,202 - GFF71 0.25 -0.0
60,202 - GFF71 0.25 +0.6
60,202 - GFF71 0.25 -1.4
60,202 - GFF71 0.25 +0.3
60,207 - GFF71 0.25 +0.5
60,207 - GFF71 0.25 -0.0
60,208 + GFF71 0.25 -1.1
60,212 - GFF71 0.25 -1.0
60,221 - GFF71 0.26 +0.4
60,223 + GFF71 0.26 -1.5
60,240 - GFF71 0.28 +1.8
60,242 + GFF71 0.28 -0.2
60,246 - GFF71 0.28 -0.6
60,251 - GFF71 0.28 -0.6
60,317 + GFF71 0.34 -0.2
60,317 + GFF71 0.34 -0.9
60,338 - GFF71 0.35 +1.7
60,363 - GFF71 0.37 +1.5
60,365 - GFF71 0.38 -0.7
60,390 - GFF71 0.40 -0.9
60,400 + GFF71 0.40 +0.2
60,408 - GFF71 0.41 +2.1
60,417 + GFF71 0.42 +0.2
60,418 - GFF71 0.42 +1.7
60,459 + GFF71 0.45 -0.2
60,521 - GFF71 0.50 +0.3
60,544 + GFF71 0.52 -0.3
60,583 - GFF71 0.55 -1.3
60,706 - GFF71 0.65 -0.1
60,745 + GFF71 0.68 +0.8
60,750 + GFF71 0.68 -0.5
60,755 + GFF71 0.68 -1.3
60,795 + GFF71 0.72 +0.7
60,795 + GFF71 0.72 +1.7
60,914 + GFF71 0.81 -0.1
60,921 + GFF71 0.82 +0.9
60,921 + GFF71 0.82 -1.4
60,921 + GFF71 0.82 -0.4
60,929 - GFF71 0.82 +1.1
61,023 - GFF71 0.90 +0.7
61,041 + -1.2
61,041 + -0.9
61,049 - +0.1
61,056 + -0.7
61,085 + -0.1
61,123 - -1.1
61,147 + +0.5
61,155 - -0.6
61,188 + +2.0
61,196 - +1.4
61,196 - +0.7
61,241 + +0.6
61,241 + +1.2
61,249 - GFF72 0.10 -1.4
61,249 - GFF72 0.10 -0.6
61,249 - GFF72 0.10 -0.8
61,249 - GFF72 0.10 -1.3
61,249 - GFF72 0.10 -1.2
61,249 - GFF72 0.10 -1.0
61,251 - GFF72 0.10 +0.2
61,251 - GFF72 0.10 -1.5
61,252 + GFF72 0.10 +0.6
61,253 + GFF72 0.10 +0.9
61,260 - GFF72 0.11 -0.6
61,261 - GFF72 0.11 -0.9
61,261 - GFF72 0.11 +1.9
61,287 + GFF72 0.14 -0.3
61,295 - GFF72 0.15 +0.1
61,316 + GFF72 0.17 -0.4
61,333 + GFF72 0.18 -0.1
61,333 + GFF72 0.18 +0.4
61,359 + GFF72 0.21 +0.8
61,359 + GFF72 0.21 -0.8
61,359 + GFF72 0.21 +1.4
61,359 + GFF72 0.21 +0.2
61,359 + GFF72 0.21 -1.3
61,359 + GFF72 0.21 -1.1
61,360 - GFF72 0.21 -0.3
61,367 - GFF72 0.22 +0.5
61,367 - GFF72 0.22 -1.1
61,367 - GFF72 0.22 -1.0
61,367 - GFF72 0.22 -0.7
61,367 - GFF72 0.22 -0.3
61,367 - GFF72 0.22 -0.4
61,367 - GFF72 0.22 +1.1
61,367 - GFF72 0.22 -1.6
61,367 - GFF72 0.22 +0.6
61,378 + GFF72 0.23 +0.1
61,382 - GFF72 0.23 +0.4
61,427 + GFF72 0.28 -0.1
61,448 - GFF72 0.30 -0.3
61,459 - GFF72 0.31 -1.3
61,473 + GFF72 0.32 +0.4
61,473 + GFF72 0.32 -1.7
61,476 - GFF72 0.33 +1.2
61,486 - GFF72 0.34 -0.2
61,513 + GFF72 0.36 -1.4
61,513 + GFF72 0.36 +1.5
61,514 - GFF72 0.36 +0.2
61,521 - GFF72 0.37 -1.9
61,521 - GFF72 0.37 -0.2
61,521 - GFF72 0.37 +0.0
61,529 - GFF72 0.38 +0.6
61,529 - GFF72 0.38 -0.6
61,559 - GFF72 0.41 -0.7
61,559 - GFF72 0.41 +0.6
61,575 + GFF72 0.42 +0.7
61,583 - GFF72 0.43 -0.6
61,583 - GFF72 0.43 -0.4
61,583 - GFF72 0.43 +0.5
61,621 + GFF72 0.47 +1.2
61,670 + GFF72 0.52 +0.1
61,675 + GFF72 0.52 -1.7
61,675 + GFF72 0.52 +1.0
61,675 + GFF72 0.52 +0.4
61,711 + GFF72 0.56 +0.2
61,720 + GFF72 0.57 -1.4
61,726 - GFF72 0.57 +0.7
61,749 + GFF72 0.60 +0.1
61,750 + GFF72 0.60 +1.0
61,758 - GFF72 0.61 +0.6
61,770 - GFF72 0.62 +0.9
61,777 + GFF72 0.62 +1.5
61,816 + GFF72 0.66 -0.2
61,851 + GFF72 0.70 +0.5
61,851 + GFF72 0.70 +0.5
61,859 - GFF72 0.71 +0.7
61,859 - GFF72 0.71 +0.5
61,869 - GFF72 0.72 +0.7
61,899 + GFF72 0.75 +0.9
61,899 + GFF72 0.75 +1.5
61,899 - GFF72 0.75 -0.8
61,899 - GFF72 0.75 +1.4
61,907 - GFF72 0.75 -0.8
61,908 + GFF72 0.75 +0.1
61,908 + GFF72 0.75 +1.1
61,913 + GFF72 0.76 -0.5
61,921 - GFF72 0.77 -1.0
61,924 - GFF72 0.77 -1.2
61,934 - GFF72 0.78 +1.7
61,942 - GFF72 0.79 +1.8
61,942 - GFF72 0.79 +0.8
61,968 + GFF72 0.81 -1.3
61,968 + GFF72 0.81 +1.2
61,986 - GFF72 0.83 -1.1
61,993 + GFF72 0.84 -1.7
61,993 + GFF72 0.84 -1.2
61,998 + GFF72 0.84 -0.2
61,998 + GFF72 0.84 +1.0
62,007 + GFF72 0.85 +1.6
62,015 - GFF72 0.86 +0.2
62,032 + GFF72 0.88 +1.8
62,032 + GFF72 0.88 -0.4
62,040 - GFF72 0.88 +0.4
62,081 - -1.0
62,085 - +1.1
62,092 - +2.0
62,092 - +0.5
62,114 + +0.1
62,129 - +0.6
62,148 + +0.3

Or see this region's nucleotide sequence