Strain Fitness in Sphingobium sp. HT1-2 around GFF69

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
57,633	+		GFF67	0.78	-0.7
57,638	+		GFF67	0.78	-0.9
57,638	+		GFF67	0.78	+0.8
57,641	-		GFF67	0.78	-1.6
57,643	+		GFF67	0.78	+0.9
57,672	+		GFF67	0.80	-0.0
57,682	+		GFF67	0.81	-0.1
57,713	+		GFF67	0.83	-0.9
57,718	+		GFF67	0.83	-0.1
57,718	+		GFF67	0.83	-0.2
57,718	+		GFF67	0.83	-0.2
57,721	-		GFF67	0.83	-0.2
57,726	-		GFF67	0.83	-1.1
57,726	-		GFF67	0.83	+0.7
57,726	-		GFF67	0.83	-1.1
57,726	-		GFF67	0.83	-0.9
57,731	-		GFF67	0.84	+0.4
57,753	+		GFF67	0.85	-2.6
57,753	+		GFF67	0.85	+1.2
57,754	+		GFF67	0.85	-0.5
57,754	+		GFF67	0.85	-0.7
57,761	-		GFF67	0.85	-0.6
57,761	-		GFF67	0.85	-0.1
57,761	-		GFF67	0.85	-1.5
57,762	-		GFF67	0.86	+0.6
57,778	+		GFF67	0.86	+0.4
57,778	+		GFF67	0.86	-0.5
57,789	-		GFF67	0.87	-0.5
57,804	+		GFF67	0.88	+0.6
57,809	+		GFF67	0.88	-0.0
57,812	+		GFF67	0.89	-0.8
57,812	+		GFF67	0.89	+0.7
57,839	+				-0.3
57,841	-				-0.7
57,845	+				-0.7
57,847	-				-0.1
57,847	-				+0.2
57,853	-				+1.0
57,866	+				-0.8
57,874	-				-0.5
57,874	-				-0.6
57,875	+				-2.0
57,890	-				-0.1
57,907	+				+0.0
57,910	-				+0.1
58,029	+				-1.6
58,029	+				+1.6
58,029	+				-0.1
58,029	+				-0.6
58,037	-				-1.2
58,037	-				+0.2
58,037	-				-1.8
58,037	-				-1.6
58,037	-				-0.9
58,085	+		GFF68	0.20	-3.1
58,085	+		GFF68	0.20	+0.4
58,092	+		GFF68	0.21	+0.5
58,093	-		GFF68	0.22	-0.1
58,093	-		GFF68	0.22	-0.6
58,093	-		GFF68	0.22	-0.5
58,093	-		GFF68	0.22	-0.1
58,093	-		GFF68	0.22	-1.2
58,093	-		GFF68	0.22	+1.8
58,097	+		GFF68	0.23	-0.2
58,100	-		GFF68	0.23	-1.1
58,103	+		GFF68	0.24	-0.2
58,103	+		GFF68	0.24	-0.2
58,105	-		GFF68	0.24	-0.5
58,145	+		GFF68	0.33	-0.2
58,158	-		GFF68	0.36	-1.4
58,173	-		GFF68	0.40	-0.9
58,173	-		GFF68	0.40	-0.7
58,176	-		GFF68	0.40	-1.3
58,228	-		GFF68	0.52	-1.0
58,238	-		GFF68	0.54	-0.3
58,238	-		GFF68	0.54	+0.3
58,279	-		GFF68	0.63	+0.9
58,282	+		GFF68	0.64	+0.0
58,290	+		GFF68	0.66	-1.4
58,305	-		GFF68	0.69	-0.2
58,305	-		GFF68	0.69	+1.0
58,329	+		GFF68	0.74	-0.5
58,334	+		GFF68	0.76	-0.1
58,335	-		GFF68	0.76	+1.0
58,335	-		GFF68	0.76	-0.0
58,340	+		GFF68	0.77	-0.3
58,348	-		GFF68	0.79	-0.1
58,383	+		GFF68	0.87	-0.3
58,384	+		GFF68	0.87	-1.0
58,389	+		GFF68	0.88	-0.3
58,390	+		GFF68	0.88	-0.6
58,390	+		GFF68	0.88	+1.7
58,390	+		GFF68	0.88	-0.3
58,424	+				-1.2
58,426	-				+0.3
58,427	+				-1.1
58,427	+				+1.6
58,435	-				-1.1
58,440	-				-1.4
58,442	+				-0.0
58,524	-				-1.3
58,559	+				-0.8
58,559	+				+1.0
58,624	-				-0.8
58,624	-				-0.3
58,652	+				+0.1
58,652	+				-0.7
58,652	+				-1.9
58,652	+				-0.4
58,652	+				-1.0
58,652	+				-1.6
58,652	+				-1.0
58,652	+				-0.5
58,652	+				-0.1
58,652	+				-0.6
58,652	+				-1.8
58,652	+				+0.1
58,652	+				-0.8
58,652	+				-1.3
58,653	-				+0.8
58,657	+				-0.3
58,660	-				+1.0
58,660	-				+0.6
58,660	-				+0.2
58,660	-				-1.0
58,660	-				-0.5
58,660	-				-0.4
58,660	-				+0.8
58,660	-				-0.5
58,660	-				-0.2
58,660	-				-1.8
58,660	-				-1.1
58,660	-				-1.1
58,660	-				-2.3
58,660	-				-0.6
58,660	-				-0.3
58,660	-				+1.4
58,660	-				-1.4
58,660	-				-2.0
58,660	-				+0.9
58,660	-				-1.8
58,662	+				-1.0
58,665	-				+0.7
58,665	-				-0.3
58,670	-				-0.1
58,670	-				+0.0
58,670	-				+0.7
58,670	-				+0.3
58,684	-				+0.7
58,696	-				+0.8
58,735	-		GFF69	0.14	-0.5
58,738	+		GFF69	0.14	+0.7
58,754	-		GFF69	0.16	-2.2
58,758	-		GFF69	0.16	+0.3
58,758	-		GFF69	0.16	-0.2
58,769	+		GFF69	0.18	-0.3
58,777	+		GFF69	0.18	+1.6
58,785	-		GFF69	0.19	+0.0
58,801	+		GFF69	0.21	+0.9
58,826	+		GFF69	0.24	+0.8
58,826	+		GFF69	0.24	-0.6
58,838	+		GFF69	0.25	-0.3
58,847	+		GFF69	0.26	+0.4
58,852	+		GFF69	0.27	-1.3
58,857	+		GFF69	0.27	-1.0
58,857	+		GFF69	0.27	-1.8
58,862	+		GFF69	0.28	+1.5
58,862	+		GFF69	0.28	-0.8
58,870	-		GFF69	0.29	+0.4
58,891	-		GFF69	0.31	+0.2
58,891	-		GFF69	0.31	-1.1
58,927	-		GFF69	0.35	+2.5
58,929	+		GFF69	0.35	-0.9
58,933	+		GFF69	0.36	+0.1
58,937	-		GFF69	0.36	+0.1
58,940	-		GFF69	0.36	-0.9
58,973	-		GFF69	0.40	-0.9
59,010	-		GFF69	0.44	+1.5
59,037	+		GFF69	0.47	-0.5
59,045	-		GFF69	0.48	-1.6
59,064	-		GFF69	0.50	+0.4
59,157	+		GFF69	0.60	-0.1
59,173	-		GFF69	0.62	-1.3
59,173	-		GFF69	0.62	-0.1
59,173	-		GFF69	0.62	+0.5
59,173	-		GFF69	0.62	-1.8
59,197	-		GFF69	0.65	-0.5
59,204	-		GFF69	0.65	-0.8
59,227	-		GFF69	0.68	-1.5
59,231	+		GFF69	0.68	+0.9
59,231	+		GFF69	0.68	+0.4
59,231	+		GFF69	0.68	-1.3
59,231	+		GFF69	0.68	-0.3
59,237	-		GFF69	0.69	-1.1
59,239	-		GFF69	0.69	-0.3
59,239	-		GFF69	0.69	-1.5
59,239	-		GFF69	0.69	-1.8
59,239	-		GFF69	0.69	-2.3
59,239	-		GFF69	0.69	-0.5
59,239	-		GFF69	0.69	+0.6
59,249	+		GFF69	0.70	-0.3
59,254	+		GFF69	0.71	+0.0
59,254	+		GFF69	0.71	-0.4
59,254	+		GFF69	0.71	-0.4
59,257	-		GFF69	0.71	+0.4
59,262	-		GFF69	0.72	-0.3
59,262	-		GFF69	0.72	-0.1
59,262	-		GFF69	0.72	-0.3
59,262	-		GFF69	0.72	-1.3
59,286	+		GFF69	0.74	-0.4
59,286	+		GFF69	0.74	+0.2
59,289	-		GFF69	0.75	+0.1
59,296	-		GFF69	0.76	-0.6
59,308	-		GFF69	0.77	+1.1
59,318	-		GFF69	0.78	-0.5
59,349	+		GFF69	0.81	-0.6
59,357	-		GFF69	0.82	+0.6
59,366	+		GFF69	0.83	-0.1
59,366	+		GFF69	0.83	-1.2
59,366	+		GFF69	0.83	-1.8
59,374	-		GFF69	0.84	+0.6
59,374	-		GFF69	0.84	-0.2
59,374	-		GFF69	0.84	+0.7
59,377	+		GFF69	0.84	-0.6
59,377	+		GFF69	0.84	+0.4
59,377	+		GFF69	0.84	-0.1
59,377	+		GFF69	0.84	-0.1
59,384	-		GFF69	0.85	+0.8
59,385	-		GFF69	0.85	+1.5
59,394	-		GFF69	0.86	-1.9
59,400	-		GFF69	0.87	-0.3
59,425	-		GFF69	0.90	-1.2
59,427	-				-0.2
59,475	+				-0.8
59,478	-				+0.9
59,499	+				-0.4
59,500	-				+1.8
59,517	+				-0.8
59,517	+				+1.3
59,518	+				+2.6
59,518	+				+0.4
59,526	-				+1.0
59,526	-				+1.4
59,526	-				-1.0
59,526	-				-1.0
59,550	+				-0.8
59,554	-				-1.2
59,556	-				-0.1
59,640	+				-1.8
59,648	-				+1.5
59,648	-				-1.3
59,693	+		GFF70	0.23	-0.2
59,700	+		GFF70	0.27	-0.7
59,711	+		GFF70	0.32	-1.2
59,719	-		GFF70	0.35	+1.0
59,728	+		GFF70	0.39	-0.6
59,736	-		GFF70	0.43	-0.1
59,754	+		GFF70	0.51	+0.9
59,759	+		GFF70	0.53	-0.9
59,767	-		GFF70	0.57	+0.4
59,786	-		GFF70	0.65	-0.5
59,824	-		GFF70	0.82	-0.3
59,824	-		GFF70	0.82	+0.3
59,824	-		GFF70	0.82	+1.0
59,846	+				-0.9
59,859	+				+0.1
59,867	-				+0.2
59,877	-				-0.8
59,897	+				-0.4
59,905	-				-1.4
59,905	-				+1.1
59,933	+				+1.5
59,941	-				-0.3
59,981	-				-0.6
59,982	+				+1.1
59,990	-				-0.2
60,004	+				+0.7
60,020	-		GFF71	0.10	+1.0
60,031	+		GFF71	0.11	-1.2
60,042	+		GFF71	0.12	+0.9
60,068	+		GFF71	0.14	-0.3
60,101	+		GFF71	0.17	-0.0
60,101	+		GFF71	0.17	+0.4
60,104	-		GFF71	0.17	-0.1
60,120	+		GFF71	0.18	-0.8
60,176	-		GFF71	0.23	-2.1
60,194	+		GFF71	0.24	-1.5
60,194	+		GFF71	0.24	+0.3
60,194	+		GFF71	0.24	+1.0
60,194	+		GFF71	0.24	+0.8
60,194	+		GFF71	0.24	-0.4
60,194	+		GFF71	0.24	-0.2
60,199	+		GFF71	0.24	-0.6
60,199	+		GFF71	0.24	-0.8
60,199	+		GFF71	0.24	-2.2
60,202	-		GFF71	0.25	-0.4
60,202	-		GFF71	0.25	-0.4
60,202	-		GFF71	0.25	+0.4
60,202	-		GFF71	0.25	+0.3
60,202	-		GFF71	0.25	-1.8
60,202	-		GFF71	0.25	-1.7
60,202	-		GFF71	0.25	-0.0
60,208	+		GFF71	0.25	-1.4
60,208	-		GFF71	0.25	-1.5
60,209	+		GFF71	0.25	-0.8
60,212	-		GFF71	0.25	-1.3
60,223	+		GFF71	0.26	-1.8
60,238	+		GFF71	0.27	+1.3
60,238	+		GFF71	0.27	-0.2
60,242	+		GFF71	0.28	-0.5
60,243	+		GFF71	0.28	-1.8
60,246	-		GFF71	0.28	-1.0
60,248	+		GFF71	0.28	-0.1
60,251	-		GFF71	0.28	-0.9
60,317	+		GFF71	0.34	-0.5
60,317	+		GFF71	0.34	-1.2
60,355	+		GFF71	0.37	-0.1
60,363	-		GFF71	0.37	+1.1
60,365	-		GFF71	0.38	-0.7
60,365	-		GFF71	0.38	-1.0
60,387	+		GFF71	0.39	-1.0
60,390	-		GFF71	0.40	-1.2
60,392	+		GFF71	0.40	+1.5
60,400	+		GFF71	0.40	-0.2
60,408	-		GFF71	0.41	+0.4
60,408	-		GFF71	0.41	+1.8
60,410	+		GFF71	0.41	+1.3
60,417	+		GFF71	0.42	-0.6
60,417	+		GFF71	0.42	-0.1
60,425	-		GFF71	0.42	-0.1
60,442	-		GFF71	0.44	-0.1
60,459	+		GFF71	0.45	-0.5
60,469	-		GFF71	0.46	-1.2
60,513	+		GFF71	0.49	-0.3