Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF569 and GFF570 are separated by 3 nucleotides GFF570 and GFF571 are separated by 81 nucleotides GFF571 and GFF572 are separated by 585 nucleotides GFF572 and GFF573 are separated by 146 nucleotides
GFF569 - hypothetical protein, at 567,432 to 567,986
GFF569
GFF570 - hypothetical protein, at 567,990 to 568,670
GFF570
GFF571 - hypothetical protein, at 568,752 to 569,807
GFF571
GFF572 - tRNA-Ser-CGA, at 570,393 to 570,482
GFF572
GFF573 - hypothetical protein, at 570,629 to 571,000
GFF573
Position (kb) 568
569
570 Strain fitness (log2 ratio) -2
-1
0
1
2 at 567.779 kb on - strand, within GFF569 at 567.783 kb on + strand, within GFF569 at 567.791 kb on - strand, within GFF569 at 567.791 kb on - strand, within GFF569 at 567.802 kb on + strand, within GFF569 at 567.810 kb on - strand, within GFF569 at 567.817 kb on + strand, within GFF569 at 567.821 kb on + strand, within GFF569 at 567.855 kb on + strand, within GFF569 at 567.855 kb on + strand, within GFF569 at 567.858 kb on - strand, within GFF569 at 567.863 kb on - strand, within GFF569 at 567.863 kb on - strand, within GFF569 at 567.892 kb on + strand, within GFF569 at 567.900 kb on - strand, within GFF569 at 567.920 kb on - strand, within GFF569 at 567.959 kb on + strand at 567.980 kb on + strand at 567.988 kb on - strand at 567.988 kb on - strand at 567.988 kb on - strand at 567.988 kb on - strand at 567.988 kb on - strand at 568.014 kb on + strand at 568.021 kb on + strand at 568.029 kb on - strand at 568.029 kb on - strand at 568.037 kb on + strand at 568.039 kb on + strand at 568.039 kb on + strand at 568.040 kb on + strand at 568.047 kb on - strand at 568.050 kb on + strand at 568.050 kb on + strand at 568.062 kb on + strand, within GFF570 at 568.098 kb on + strand, within GFF570 at 568.106 kb on + strand, within GFF570 at 568.132 kb on + strand, within GFF570 at 568.163 kb on + strand, within GFF570 at 568.183 kb on + strand, within GFF570 at 568.193 kb on - strand, within GFF570 at 568.193 kb on - strand, within GFF570 at 568.223 kb on - strand, within GFF570 at 568.231 kb on - strand, within GFF570 at 568.234 kb on + strand, within GFF570 at 568.234 kb on + strand, within GFF570 at 568.234 kb on + strand, within GFF570 at 568.239 kb on + strand, within GFF570 at 568.241 kb on - strand, within GFF570 at 568.242 kb on - strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on + strand, within GFF570 at 568.244 kb on - strand, within GFF570 at 568.252 kb on - strand, within GFF570 at 568.252 kb on - strand, within GFF570 at 568.252 kb on - strand, within GFF570 at 568.255 kb on + strand, within GFF570 at 568.256 kb on + strand, within GFF570 at 568.263 kb on - strand, within GFF570 at 568.263 kb on - strand, within GFF570 at 568.263 kb on - strand, within GFF570 at 568.265 kb on - strand, within GFF570 at 568.287 kb on - strand, within GFF570 at 568.302 kb on + strand, within GFF570 at 568.303 kb on + strand, within GFF570 at 568.320 kb on - strand, within GFF570 at 568.320 kb on - strand, within GFF570 at 568.331 kb on + strand, within GFF570 at 568.344 kb on - strand, within GFF570 at 568.364 kb on + strand, within GFF570 at 568.364 kb on + strand, within GFF570 at 568.421 kb on + strand, within GFF570 at 568.421 kb on + strand, within GFF570 at 568.421 kb on + strand, within GFF570 at 568.421 kb on + strand, within GFF570 at 568.421 kb on + strand, within GFF570 at 568.421 kb on - strand, within GFF570 at 568.429 kb on - strand, within GFF570 at 568.429 kb on - strand, within GFF570 at 568.429 kb on - strand, within GFF570 at 568.429 kb on - strand, within GFF570 at 568.429 kb on - strand, within GFF570 at 568.429 kb on - strand, within GFF570 at 568.444 kb on - strand, within GFF570 at 568.445 kb on + strand, within GFF570 at 568.453 kb on - strand, within GFF570 at 568.453 kb on - strand, within GFF570 at 568.463 kb on - strand, within GFF570 at 568.465 kb on - strand, within GFF570 at 568.478 kb on + strand, within GFF570 at 568.478 kb on + strand, within GFF570 at 568.486 kb on - strand, within GFF570 at 568.486 kb on - strand, within GFF570 at 568.486 kb on - strand, within GFF570 at 568.513 kb on + strand, within GFF570 at 568.513 kb on + strand, within GFF570 at 568.521 kb on - strand, within GFF570 at 568.521 kb on - strand, within GFF570 at 568.546 kb on + strand, within GFF570 at 568.551 kb on + strand, within GFF570 at 568.560 kb on - strand, within GFF570 at 568.564 kb on + strand, within GFF570 at 568.572 kb on - strand, within GFF570 at 568.573 kb on + strand, within GFF570 at 568.588 kb on + strand, within GFF570 at 568.595 kb on + strand, within GFF570 at 568.608 kb on + strand at 568.613 kb on + strand at 568.613 kb on + strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.657 kb on + strand at 568.657 kb on + strand at 568.665 kb on + strand at 568.665 kb on - strand at 568.665 kb on - strand at 568.665 kb on - strand at 568.673 kb on - strand at 568.675 kb on + strand at 568.692 kb on + strand at 568.700 kb on + strand at 568.700 kb on - strand at 568.700 kb on - strand at 568.700 kb on - strand at 568.700 kb on - strand at 568.700 kb on - strand at 568.700 kb on - strand at 568.702 kb on - strand at 568.702 kb on - strand at 568.717 kb on + strand at 568.717 kb on + strand at 568.729 kb on + strand at 568.729 kb on + strand at 568.729 kb on + strand at 568.729 kb on + strand at 568.729 kb on + strand at 568.732 kb on - strand at 568.737 kb on - strand at 568.737 kb on - strand at 568.776 kb on - strand at 568.780 kb on + strand at 568.780 kb on + strand at 568.780 kb on + strand at 568.780 kb on + strand at 568.782 kb on + strand at 568.782 kb on + strand at 568.790 kb on - strand at 568.796 kb on + strand at 568.892 kb on - strand, within GFF571 at 568.892 kb on - strand, within GFF571 at 568.892 kb on - strand, within GFF571 at 569.255 kb on + strand, within GFF571 at 569.430 kb on - strand, within GFF571 at 569.659 kb on + strand, within GFF571 at 569.667 kb on - strand, within GFF571 at 569.714 kb on + strand at 569.717 kb on + strand at 569.717 kb on + strand at 569.722 kb on - strand at 569.725 kb on - strand at 569.725 kb on - strand at 569.728 kb on + strand at 569.761 kb on - strand at 569.798 kb on - strand at 569.824 kb on - strand at 569.841 kb on - strand at 569.878 kb on + strand at 569.947 kb on - strand at 569.965 kb on - strand at 570.000 kb on + strand at 570.025 kb on + strand at 570.032 kb on - strand at 570.033 kb on + strand at 570.033 kb on - strand at 570.039 kb on + strand at 570.045 kb on + strand at 570.047 kb on - strand at 570.065 kb on - strand at 570.082 kb on - strand at 570.095 kb on - strand at 570.095 kb on - strand at 570.105 kb on + strand at 570.115 kb on - strand at 570.118 kb on + strand at 570.126 kb on - strand at 570.129 kb on - strand at 570.133 kb on + strand at 570.133 kb on + strand at 570.140 kb on + strand at 570.148 kb on - strand at 570.196 kb on - strand at 570.201 kb on + strand at 570.207 kb on - strand at 570.214 kb on - strand at 570.216 kb on + strand at 570.224 kb on - strand at 570.259 kb on + strand at 570.259 kb on + strand at 570.312 kb on + strand at 570.614 kb on + strand at 570.621 kb on - strand at 570.622 kb on - strand at 570.626 kb on - strand at 570.641 kb on + strand at 570.666 kb on + strand at 570.689 kb on - strand, within GFF573 at 570.699 kb on + strand, within GFF573 at 570.710 kb on - strand, within GFF573 at 570.723 kb on + strand, within GFF573 at 570.726 kb on - strand, within GFF573 at 570.731 kb on - strand, within GFF573 at 570.743 kb on + strand, within GFF573 at 570.745 kb on + strand, within GFF573 at 570.748 kb on - strand, within GFF573 at 570.758 kb on - strand, within GFF573 at 570.761 kb on + strand, within GFF573 at 570.769 kb on - strand, within GFF573 at 570.783 kb on + strand, within GFF573 at 570.784 kb on - strand, within GFF573 at 570.791 kb on - strand, within GFF573 at 570.803 kb on - strand, within GFF573
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 567,779 - GFF569 0.63 -1.1 567,783 + GFF569 0.63 -0.7 567,791 - GFF569 0.65 -1.2 567,791 - GFF569 0.65 +0.3 567,802 + GFF569 0.67 -0.4 567,810 - GFF569 0.68 -1.1 567,817 + GFF569 0.69 +1.1 567,821 + GFF569 0.70 -1.7 567,855 + GFF569 0.76 -1.6 567,855 + GFF569 0.76 -0.7 567,858 - GFF569 0.77 -1.1 567,863 - GFF569 0.78 -2.3 567,863 - GFF569 0.78 -0.5 567,892 + GFF569 0.83 -0.6 567,900 - GFF569 0.84 -0.3 567,920 - GFF569 0.88 -1.6 567,959 + +0.0 567,980 + -0.5 567,988 - -1.5 567,988 - -0.3 567,988 - +0.1 567,988 - -0.5 567,988 - +0.7 568,014 + +0.4 568,021 + -0.4 568,029 - -1.8 568,029 - +1.8 568,037 + +0.1 568,039 + -1.6 568,039 + -1.7 568,040 + -0.6 568,047 - -0.2 568,050 + -0.4 568,050 + -0.2 568,062 + GFF570 0.11 -2.1 568,098 + GFF570 0.16 +0.8 568,106 + GFF570 0.17 -0.6 568,132 + GFF570 0.21 +1.4 568,163 + GFF570 0.25 -0.5 568,183 + GFF570 0.28 -0.9 568,193 - GFF570 0.30 -1.1 568,193 - GFF570 0.30 -0.0 568,223 - GFF570 0.34 -0.1 568,231 - GFF570 0.35 -0.5 568,234 + GFF570 0.36 -0.2 568,234 + GFF570 0.36 +1.0 568,234 + GFF570 0.36 +1.8 568,239 + GFF570 0.37 -0.4 568,241 - GFF570 0.37 -0.2 568,242 - GFF570 0.37 -1.3 568,244 + GFF570 0.37 +0.6 568,244 + GFF570 0.37 -1.2 568,244 + GFF570 0.37 +1.9 568,244 + GFF570 0.37 -1.6 568,244 + GFF570 0.37 +0.6 568,244 + GFF570 0.37 -0.9 568,244 + GFF570 0.37 -1.2 568,244 + GFF570 0.37 +0.8 568,244 + GFF570 0.37 -2.1 568,244 + GFF570 0.37 -0.2 568,244 + GFF570 0.37 -1.9 568,244 - GFF570 0.37 -1.2 568,252 - GFF570 0.38 -0.5 568,252 - GFF570 0.38 +0.9 568,252 - GFF570 0.38 -0.9 568,255 + GFF570 0.39 +1.0 568,256 + GFF570 0.39 +0.8 568,263 - GFF570 0.40 -0.6 568,263 - GFF570 0.40 -0.5 568,263 - GFF570 0.40 +0.1 568,265 - GFF570 0.40 +1.5 568,287 - GFF570 0.44 -0.5 568,302 + GFF570 0.46 -0.2 568,303 + GFF570 0.46 -0.2 568,320 - GFF570 0.48 -0.9 568,320 - GFF570 0.48 -1.9 568,331 + GFF570 0.50 -0.6 568,344 - GFF570 0.52 -0.1 568,364 + GFF570 0.55 -0.7 568,364 + GFF570 0.55 -1.6 568,421 + GFF570 0.63 -0.1 568,421 + GFF570 0.63 -1.0 568,421 + GFF570 0.63 -0.4 568,421 + GFF570 0.63 -0.6 568,421 + GFF570 0.63 -0.4 568,421 - GFF570 0.63 -1.5 568,429 - GFF570 0.64 +0.4 568,429 - GFF570 0.64 +0.2 568,429 - GFF570 0.64 +1.6 568,429 - GFF570 0.64 -1.7 568,429 - GFF570 0.64 -0.0 568,429 - GFF570 0.64 -0.4 568,444 - GFF570 0.67 -0.5 568,445 + GFF570 0.67 +1.8 568,453 - GFF570 0.68 -0.6 568,453 - GFF570 0.68 -0.7 568,463 - GFF570 0.69 -0.5 568,465 - GFF570 0.70 +1.2 568,478 + GFF570 0.72 -0.5 568,478 + GFF570 0.72 +0.2 568,486 - GFF570 0.73 -1.0 568,486 - GFF570 0.73 -1.0 568,486 - GFF570 0.73 +1.1 568,513 + GFF570 0.77 +0.6 568,513 + GFF570 0.77 -2.1 568,521 - GFF570 0.78 -1.5 568,521 - GFF570 0.78 +0.6 568,546 + GFF570 0.82 +0.6 568,551 + GFF570 0.82 +0.5 568,560 - GFF570 0.84 -1.0 568,564 + GFF570 0.84 +1.2 568,572 - GFF570 0.85 -2.0 568,573 + GFF570 0.86 +0.4 568,588 + GFF570 0.88 +0.6 568,595 + GFF570 0.89 +0.1 568,608 + +0.5 568,613 + -0.8 568,613 + -0.9 568,621 - -1.3 568,621 - -0.1 568,621 - -0.1 568,657 + -0.5 568,657 + +0.6 568,665 + +0.3 568,665 - -0.8 568,665 - +0.8 568,665 - +1.3 568,673 - +1.3 568,675 + +1.6 568,692 + +0.1 568,700 + -1.4 568,700 - +0.8 568,700 - -0.1 568,700 - +1.2 568,700 - -0.4 568,700 - -1.0 568,700 - +0.3 568,702 - -0.3 568,702 - -1.1 568,717 + +2.1 568,717 + -1.3 568,729 + -1.2 568,729 + +1.0 568,729 + +0.3 568,729 + +0.3 568,729 + -0.8 568,732 - +1.5 568,737 - -0.5 568,737 - -2.2 568,776 - +0.2 568,780 + +1.1 568,780 + -0.8 568,780 + -0.4 568,780 + -0.9 568,782 + -0.6 568,782 + -1.1 568,790 - -1.4 568,796 + -0.7 568,892 - GFF571 0.13 -1.7 568,892 - GFF571 0.13 -0.9 568,892 - GFF571 0.13 -1.7 569,255 + GFF571 0.48 -0.7 569,430 - GFF571 0.64 +0.1 569,659 + GFF571 0.86 -0.7 569,667 - GFF571 0.87 -1.2 569,714 + -0.4 569,717 + -0.5 569,717 + -1.0 569,722 - +0.2 569,725 - -1.5 569,725 - -1.3 569,728 + +0.8 569,761 - +0.4 569,798 - -0.5 569,824 - +0.2 569,841 - -0.9 569,878 + +0.3 569,947 - -0.7 569,965 - -0.2 570,000 + -0.2 570,025 + -0.5 570,032 - +0.1 570,033 + +0.8 570,033 - -1.9 570,039 + -1.8 570,045 + -0.5 570,047 - -0.9 570,065 - -0.1 570,082 - -0.2 570,095 - -1.8 570,095 - -1.0 570,105 + -1.0 570,115 - +0.6 570,118 + -0.9 570,126 - -0.1 570,129 - +1.6 570,133 + -0.4 570,133 + -0.2 570,140 + -0.4 570,148 - +0.2 570,196 - +1.3 570,201 + -0.0 570,207 - -0.6 570,214 - -0.9 570,216 + -0.7 570,224 - -0.5 570,259 + +0.2 570,259 + +1.1 570,312 + -1.2 570,614 + -1.8 570,621 - -0.5 570,622 - -0.3 570,626 - -0.0 570,641 + -0.5 570,666 + +0.4 570,689 - GFF573 0.16 -2.1 570,699 + GFF573 0.19 +0.4 570,710 - GFF573 0.22 -1.5 570,723 + GFF573 0.25 -0.8 570,726 - GFF573 0.26 -0.7 570,731 - GFF573 0.27 -1.2 570,743 + GFF573 0.31 -0.4 570,745 + GFF573 0.31 +0.1 570,748 - GFF573 0.32 -1.3 570,758 - GFF573 0.35 -0.2 570,761 + GFF573 0.35 +0.4 570,769 - GFF573 0.38 -1.5 570,783 + GFF573 0.41 -0.6 570,784 - GFF573 0.42 -0.6 570,791 - GFF573 0.44 -1.1 570,803 - GFF573 0.47 -1.4
Or see this region's nucleotide sequence