Strain Fitness in Sphingobium sp. HT1-2 around GFF5393

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,371,277	-		GFF5391	0.77	-0.0
5,371,277	-		GFF5391	0.77	-0.5
5,371,279	+		GFF5391	0.77	-1.7
5,371,279	-		GFF5391	0.77	-0.8
5,371,289	-		GFF5391	0.78	+0.2
5,371,289	-		GFF5391	0.78	+0.6
5,371,289	-		GFF5391	0.78	-0.6
5,371,289	-		GFF5391	0.78	-0.7
5,371,294	-		GFF5391	0.78	-2.5
5,371,295	+		GFF5391	0.78	+0.3
5,371,296	+		GFF5391	0.79	-1.9
5,371,301	+		GFF5391	0.79	-1.1
5,371,304	-		GFF5391	0.79	+0.2
5,371,309	-		GFF5391	0.79	+0.4
5,371,354	+		GFF5391	0.82	-1.5
5,371,362	-		GFF5391	0.83	-0.6
5,371,381	+		GFF5391	0.84	-0.6
5,371,381	-		GFF5391	0.84	+0.3
5,371,389	-		GFF5391	0.85	+0.5
5,371,412	+		GFF5391	0.86	-1.0
5,371,456	-		GFF5391	0.89	-1.0
5,371,466	-		GFF5391	0.90	-1.0
5,371,475	+				+0.3
5,371,483	+				-0.9
5,371,483	+				-1.5
5,371,483	-				-1.1
5,371,488	+				+0.8
5,371,488	+				-0.6
5,371,496	-				-0.5
5,371,497	+				-1.5
5,371,527	+				+0.6
5,371,527	+				-1.6
5,371,543	+				-1.0
5,371,560	-				-0.6
5,371,575	-				-0.7
5,371,584	+				-1.2
5,371,584	+				-1.9
5,371,592	-				-1.4
5,371,592	-				-0.2
5,371,592	-				-1.0
5,371,592	-				+0.5
5,371,592	-				-1.9
5,371,615	-				-0.0
5,371,623	-				-0.7
5,371,649	-				-0.5
5,371,676	+				-1.1
5,371,676	+				-0.7
5,371,689	-		GFF5392	0.12	-0.9
5,371,696	+		GFF5392	0.13	-0.6
5,371,698	-		GFF5392	0.13	+1.1
5,371,704	-		GFF5392	0.14	+0.3
5,371,733	+		GFF5392	0.19	-1.8
5,371,756	+		GFF5392	0.23	-1.1
5,371,757	-		GFF5392	0.23	-0.1
5,371,764	-		GFF5392	0.24	-0.3
5,371,771	+		GFF5392	0.25	-0.7
5,371,772	+		GFF5392	0.25	+0.4
5,371,772	+		GFF5392	0.25	-0.2
5,371,780	-		GFF5392	0.26	-1.4
5,371,780	-		GFF5392	0.26	-0.6
5,371,782	-		GFF5392	0.27	-0.6
5,371,789	+		GFF5392	0.28	-1.9
5,371,802	+		GFF5392	0.30	-0.2
5,371,802	+		GFF5392	0.30	-1.1
5,371,802	+		GFF5392	0.30	-0.9
5,371,802	+		GFF5392	0.30	-0.0
5,371,802	+		GFF5392	0.30	-1.0
5,371,802	+		GFF5392	0.30	+0.7
5,371,810	+		GFF5392	0.31	-0.7
5,371,810	+		GFF5392	0.31	+0.3
5,371,810	+		GFF5392	0.31	-0.6
5,371,810	-		GFF5392	0.31	-0.9
5,371,818	-		GFF5392	0.33	-0.7
5,371,818	-		GFF5392	0.33	-0.3
5,371,844	-		GFF5392	0.37	-0.3
5,371,860	+		GFF5392	0.39	+1.2
5,371,863	-		GFF5392	0.40	-0.8
5,371,893	+		GFF5392	0.45	-1.7
5,371,948	-		GFF5392	0.53	-0.9
5,371,950	+		GFF5392	0.54	-1.3
5,371,953	-		GFF5392	0.54	-2.3
5,371,986	-		GFF5392	0.59	-0.9
5,371,986	-		GFF5392	0.59	-1.9
5,371,988	+		GFF5392	0.60	-1.5
5,371,995	-		GFF5392	0.61	+0.4
5,371,996	-		GFF5392	0.61	-1.2
5,372,012	+		GFF5392	0.64	-1.1
5,372,013	-		GFF5392	0.64	-0.8
5,372,020	-		GFF5392	0.65	-0.0
5,372,033	+		GFF5392	0.67	-0.6
5,372,045	+		GFF5392	0.69	-0.6
5,372,045	+		GFF5392	0.69	-0.8
5,372,046	-		GFF5392	0.69	-0.1
5,372,053	-		GFF5392	0.70	-0.9
5,372,053	-		GFF5392	0.70	+0.3
5,372,055	+		GFF5392	0.71	-1.4
5,372,062	+		GFF5392	0.72	-0.3
5,372,065	-		GFF5392	0.72	+1.0
5,372,105	+		GFF5392	0.79	-3.1
5,372,105	+		GFF5392	0.79	-1.5
5,372,105	+		GFF5392	0.79	-0.5
5,372,105	+		GFF5392	0.79	+0.5
5,372,105	+		GFF5392	0.79	-0.8
5,372,105	+		GFF5392	0.79	-0.6
5,372,110	+		GFF5392	0.79	-0.0
5,372,110	+		GFF5392	0.79	+0.5
5,372,113	-		GFF5392	0.80	-1.2
5,372,113	-		GFF5392	0.80	-0.6
5,372,113	-		GFF5392	0.80	-0.8
5,372,113	-		GFF5392	0.80	-1.1
5,372,113	-		GFF5392	0.80	-0.6
5,372,113	-		GFF5392	0.80	-0.2
5,372,113	-		GFF5392	0.80	+1.3
5,372,113	-		GFF5392	0.80	+0.4
5,372,115	+		GFF5392	0.80	-0.2
5,372,118	-		GFF5392	0.81	-0.0
5,372,118	-		GFF5392	0.81	-1.7
5,372,118	-		GFF5392	0.81	-0.1
5,372,132	+		GFF5392	0.83	+0.1
5,372,134	+		GFF5392	0.83	+1.4
5,372,134	+		GFF5392	0.83	-1.8
5,372,141	-		GFF5392	0.84	-1.4
5,372,165	+		GFF5392	0.88	-0.5
5,372,173	-		GFF5392	0.89	-1.3
5,372,173	-		GFF5392	0.89	-0.0
5,372,215	+				-0.9
5,372,223	-				-1.2
5,372,223	-				+1.1
5,372,237	-				-0.4
5,372,245	+				+0.6
5,372,303	+				+1.6
5,372,304	-				+0.7
5,372,304	-				+0.1
5,372,304	-				+0.2
5,372,311	-				-0.4
5,372,331	+		GFF5393	0.12	+0.6
5,372,341	-		GFF5393	0.15	-0.8
5,372,341	-		GFF5393	0.15	-0.5
5,372,346	-		GFF5393	0.16	-1.3
5,372,399	+		GFF5393	0.27	-0.8
5,372,402	-		GFF5393	0.28	-0.7
5,372,407	-		GFF5393	0.29	+1.9
5,372,407	-		GFF5393	0.29	-1.3
5,372,407	-		GFF5393	0.29	-0.9
5,372,407	-		GFF5393	0.29	-0.9
5,372,407	-		GFF5393	0.29	-0.6
5,372,417	-		GFF5393	0.31	-1.4
5,372,426	+		GFF5393	0.33	-0.8
5,372,426	+		GFF5393	0.33	+0.4
5,372,426	+		GFF5393	0.33	-0.5
5,372,426	+		GFF5393	0.33	-0.8
5,372,434	-		GFF5393	0.35	+0.4
5,372,434	-		GFF5393	0.35	-0.5
5,372,434	-		GFF5393	0.35	-0.5
5,372,434	-		GFF5393	0.35	+0.1
5,372,461	-		GFF5393	0.41	-0.3
5,372,469	-		GFF5393	0.43	-0.8
5,372,485	+		GFF5393	0.46	-0.4
5,372,503	-		GFF5393	0.50	+0.2
5,372,525	-		GFF5393	0.55	+1.7
5,372,544	+		GFF5393	0.59	-1.5
5,372,544	+		GFF5393	0.59	+1.7
5,372,549	+		GFF5393	0.60	+0.2
5,372,581	+		GFF5393	0.68	-1.5
5,372,589	-		GFF5393	0.69	+0.2
5,372,616	-		GFF5393	0.75	-0.8
5,372,616	-		GFF5393	0.75	-1.0
5,372,643	-		GFF5393	0.81	-0.7
5,372,658	+		GFF5393	0.85	+0.2
5,372,666	-		GFF5393	0.86	-1.2
5,372,666	-		GFF5393	0.86	+1.0
5,372,666	-		GFF5393	0.86	+0.3
5,372,666	-		GFF5393	0.86	-1.2
5,372,674	+		GFF5393	0.88	-1.2
5,372,674	+		GFF5393	0.88	-1.5
5,372,675	-		GFF5393	0.88	+0.7
5,372,682	-				-1.8
5,372,686	+				+1.3
5,372,694	-				-1.4
5,372,694	-				+0.5
5,372,700	-				+0.1
5,372,710	-				+1.0
5,372,721	+				-0.2
5,372,721	+				+0.4
5,372,721	+				+0.4
5,372,728	+				+0.4
5,372,729	-				-1.4
5,372,734	-				+0.5
5,372,741	+				+0.5
5,372,741	+				-0.3
5,372,749	-				+1.1
5,372,749	-				-1.1
5,372,751	+				-0.7
5,372,751	+				-0.1
5,372,760	-				-0.8
5,372,769	+				-0.9
5,372,779	+				+1.4
5,372,787	-				-0.1
5,372,789	+				-1.1
5,372,789	+				-0.6
5,372,789	+				+0.3
5,372,797	-				-1.0
5,372,797	-				+0.3
5,372,797	-				+0.2
5,372,801	+				-0.7
5,372,806	+		GFF5394	0.13	-0.7
5,372,806	+		GFF5394	0.13	-1.4
5,372,809	-		GFF5394	0.16	+0.1
5,372,820	+		GFF5394	0.25	-1.3
5,372,825	+		GFF5394	0.29	-0.4
5,372,825	+		GFF5394	0.29	-0.4
5,372,825	+		GFF5394	0.29	-0.8
5,372,825	+		GFF5394	0.29	-1.1
5,372,825	+		GFF5394	0.29	-0.5
5,372,825	-		GFF5394	0.29	+0.6
5,372,833	-		GFF5394	0.36	-0.2
5,372,833	-		GFF5394	0.36	-1.0
5,372,833	-		GFF5394	0.36	+0.2
5,372,833	-		GFF5394	0.36	-0.4
5,372,833	-		GFF5394	0.36	-0.6
5,372,833	-		GFF5394	0.36	-0.6
5,372,833	-		GFF5394	0.36	-0.9
5,372,833	-		GFF5394	0.36	-1.7
5,372,838	-		GFF5394	0.40	-0.4
5,372,838	-		GFF5394	0.40	-0.3
5,372,959	+				-0.2
5,372,974	-				-0.6
5,372,976	+				-0.6
5,372,991	-				-0.8
5,372,991	-				-0.5
5,373,059	+		GFF5395	0.19	-2.1
5,373,064	+		GFF5395	0.20	+0.1
5,373,064	+		GFF5395	0.20	-0.9
5,373,067	-		GFF5395	0.21	-1.5
5,373,069	+		GFF5395	0.21	-0.7
5,373,072	-		GFF5395	0.22	+0.3
5,373,105	+		GFF5395	0.28	-0.8
5,373,115	+		GFF5395	0.30	-1.9
5,373,115	-		GFF5395	0.30	+0.4
5,373,131	+		GFF5395	0.34	-1.1
5,373,131	+		GFF5395	0.34	+2.3
5,373,139	-		GFF5395	0.35	-0.6
5,373,139	-		GFF5395	0.35	-0.0
5,373,139	-		GFF5395	0.35	-0.5
5,373,147	-		GFF5395	0.37	+0.9
5,373,167	+		GFF5395	0.41	+0.7
5,373,186	-		GFF5395	0.45	+0.1
5,373,187	+		GFF5395	0.45	-0.5
5,373,206	-		GFF5395	0.49	-0.1
5,373,210	-		GFF5395	0.50	+0.5
5,373,232	+		GFF5395	0.55	-0.8
5,373,234	+		GFF5395	0.55	-0.9
5,373,242	+		GFF5395	0.57	-1.2
5,373,250	+		GFF5395	0.58	+0.2
5,373,250	-		GFF5395	0.58	+0.1
5,373,299	+		GFF5395	0.68	-1.6
5,373,323	-		GFF5395	0.73	-1.5
5,373,323	-		GFF5395	0.73	+0.1
5,373,323	-		GFF5395	0.73	-1.6
5,373,323	-		GFF5395	0.73	-1.8
5,373,328	+		GFF5395	0.74	-1.4
5,373,336	-		GFF5395	0.76	-1.2
5,373,427	-				-0.6
5,373,427	-				+0.7
5,373,427	-				+0.3
5,373,432	-				-0.1
5,373,445	-				+0.1
5,373,482	+				-0.3
5,373,482	+				-0.6
5,373,482	+				-0.6
5,373,482	+				-0.8
5,373,482	+				-1.8
5,373,484	-				-0.3
5,373,489	+				-1.8
5,373,490	-				-1.1
5,373,490	-				-0.5
5,373,490	-				-0.1
5,373,490	-				-0.2
5,373,490	-				-0.0
5,373,490	-				-1.8
5,373,506	+				-0.5
5,373,506	+				+1.2
5,373,506	+				+0.5
5,373,507	-				-0.8
5,373,509	-				-1.3
5,373,514	-				+0.4
5,373,514	-				-0.2
5,373,514	-				-0.7
5,373,514	-				-0.0
5,373,514	-				-1.2
5,373,516	+				-0.5
5,373,524	-				-1.1
5,373,524	-				-1.1
5,373,524	-				-0.0
5,373,524	-				-1.5
5,373,524	-				-0.5
5,373,524	-				-0.9
5,373,524	-				+0.9
5,373,524	-				-0.5
5,373,524	-				+0.8
5,373,524	-				-1.6
5,373,556	-				-0.5
5,373,582	-				-0.7
5,373,585	+				-0.5
5,373,593	-				+0.4
5,373,603	+				+1.0
5,373,606	+				-0.7
5,373,611	-				+0.5