Strain Fitness in Sphingobium sp. HT1-2 around GFF5360

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,344,795	-				+0.4
5,344,829	+				-2.5
5,344,839	+				-0.9
5,344,839	+				-1.7
5,344,849	+				+0.1
5,344,869	-				-1.5
5,344,872	+				-1.3
5,344,872	+				-0.6
5,344,872	+				+0.7
5,344,872	+				-1.5
5,344,880	-				-0.8
5,344,880	-				-1.9
5,344,880	-				+0.9
5,344,880	-				+0.2
5,344,880	-				-1.4
5,344,882	+				-1.1
5,344,886	+		GFF5359	0.10	-0.7
5,344,894	-		GFF5359	0.11	-1.2
5,344,894	-		GFF5359	0.11	-1.0
5,344,894	-		GFF5359	0.11	-0.6
5,344,906	+		GFF5359	0.12	-0.9
5,344,914	-		GFF5359	0.13	-1.9
5,344,930	-		GFF5359	0.15	-0.5
5,344,945	+		GFF5359	0.16	-1.4
5,344,955	+		GFF5359	0.17	-1.1
5,344,955	+		GFF5359	0.17	-1.3
5,344,955	+		GFF5359	0.17	-2.3
5,344,963	+		GFF5359	0.18	-0.5
5,344,963	+		GFF5359	0.18	-1.6
5,344,963	+		GFF5359	0.18	-0.4
5,344,963	+		GFF5359	0.18	+0.3
5,344,963	+		GFF5359	0.18	-0.1
5,344,963	+		GFF5359	0.18	-0.0
5,344,963	+		GFF5359	0.18	-1.3
5,344,971	-		GFF5359	0.19	-0.1
5,344,973	+		GFF5359	0.19	-1.3
5,344,974	+		GFF5359	0.19	-0.7
5,344,974	+		GFF5359	0.19	-1.5
5,344,978	+		GFF5359	0.19	-1.6
5,344,978	+		GFF5359	0.19	-0.4
5,344,982	-		GFF5359	0.20	-1.5
5,344,982	-		GFF5359	0.20	-0.4
5,344,982	-		GFF5359	0.20	-0.5
5,344,982	-		GFF5359	0.20	-0.6
5,344,982	-		GFF5359	0.20	-0.1
5,344,983	+		GFF5359	0.20	+0.2
5,344,983	+		GFF5359	0.20	+0.6
5,344,983	+		GFF5359	0.20	+0.5
5,344,983	+		GFF5359	0.20	+0.9
5,344,986	-		GFF5359	0.20	-0.6
5,344,987	-		GFF5359	0.20	-0.4
5,344,991	-		GFF5359	0.21	-1.5
5,344,991	-		GFF5359	0.21	-2.0
5,344,991	-		GFF5359	0.21	-1.0
5,344,991	-		GFF5359	0.21	-1.2
5,344,997	-		GFF5359	0.21	-0.5
5,345,001	-		GFF5359	0.22	-0.1
5,345,006	+		GFF5359	0.22	-0.8
5,345,015	-		GFF5359	0.23	+0.4
5,345,015	-		GFF5359	0.23	-0.5
5,345,050	+		GFF5359	0.27	-1.5
5,345,058	+		GFF5359	0.27	-0.6
5,345,058	+		GFF5359	0.27	-0.1
5,345,058	+		GFF5359	0.27	-0.8
5,345,058	+		GFF5359	0.27	+0.6
5,345,066	-		GFF5359	0.28	-0.8
5,345,066	-		GFF5359	0.28	-0.5
5,345,091	+		GFF5359	0.31	+0.2
5,345,091	+		GFF5359	0.31	-0.7
5,345,099	-		GFF5359	0.32	-1.2
5,345,110	+		GFF5359	0.33	-2.0
5,345,129	+		GFF5359	0.35	+0.3
5,345,157	+		GFF5359	0.37	+0.2
5,345,157	+		GFF5359	0.37	-2.4
5,345,183	-		GFF5359	0.40	+1.1
5,345,190	+		GFF5359	0.41	-0.7
5,345,193	-		GFF5359	0.41	-1.4
5,345,193	-		GFF5359	0.41	-0.7
5,345,198	-		GFF5359	0.41	-0.8
5,345,200	+		GFF5359	0.42	-1.2
5,345,203	+		GFF5359	0.42	+0.2
5,345,203	+		GFF5359	0.42	-0.4
5,345,205	+		GFF5359	0.42	+0.3
5,345,205	+		GFF5359	0.42	+0.2
5,345,205	+		GFF5359	0.42	-1.4
5,345,205	+		GFF5359	0.42	+0.1
5,345,205	+		GFF5359	0.42	-1.2
5,345,205	+		GFF5359	0.42	-0.9
5,345,208	-		GFF5359	0.42	-0.2
5,345,213	-		GFF5359	0.43	+1.1
5,345,219	-		GFF5359	0.44	+0.4
5,345,234	+		GFF5359	0.45	+1.2
5,345,249	-		GFF5359	0.47	-1.0
5,345,257	+		GFF5359	0.47	-0.6
5,345,262	+		GFF5359	0.48	+0.3
5,345,262	+		GFF5359	0.48	+0.1
5,345,262	+		GFF5359	0.48	-0.4
5,345,262	+		GFF5359	0.48	-1.5
5,345,262	+		GFF5359	0.48	-0.8
5,345,265	-		GFF5359	0.48	-0.7
5,345,270	-		GFF5359	0.49	-0.7
5,345,272	+		GFF5359	0.49	-0.3
5,345,272	+		GFF5359	0.49	-0.9
5,345,272	+		GFF5359	0.49	-1.4
5,345,272	+		GFF5359	0.49	+0.3
5,345,272	+		GFF5359	0.49	-2.4
5,345,272	+		GFF5359	0.49	-1.8
5,345,272	+		GFF5359	0.49	-2.1
5,345,272	+		GFF5359	0.49	+0.2
5,345,272	+		GFF5359	0.49	+0.4
5,345,272	+		GFF5359	0.49	-0.7
5,345,272	+		GFF5359	0.49	-1.6
5,345,272	+		GFF5359	0.49	-2.1
5,345,272	+		GFF5359	0.49	-1.2
5,345,272	+		GFF5359	0.49	-1.8
5,345,275	-		GFF5359	0.49	+0.6
5,345,280	-		GFF5359	0.50	-0.2
5,345,280	-		GFF5359	0.50	+0.1
5,345,280	-		GFF5359	0.50	+0.3
5,345,280	-		GFF5359	0.50	-0.6
5,345,280	-		GFF5359	0.50	-2.2
5,345,280	-		GFF5359	0.50	+0.1
5,345,280	-		GFF5359	0.50	+1.1
5,345,280	-		GFF5359	0.50	+0.4
5,345,280	-		GFF5359	0.50	+1.5
5,345,280	-		GFF5359	0.50	+0.1
5,345,280	-		GFF5359	0.50	-1.5
5,345,280	-		GFF5359	0.50	-0.6
5,345,280	-		GFF5359	0.50	-1.4
5,345,280	-		GFF5359	0.50	-1.9
5,345,280	-		GFF5359	0.50	-0.9
5,345,280	-		GFF5359	0.50	-0.2
5,345,280	-		GFF5359	0.50	-0.2
5,345,280	-		GFF5359	0.50	-0.9
5,345,280	-		GFF5359	0.50	+1.2
5,345,280	-		GFF5359	0.50	+0.3
5,345,280	-		GFF5359	0.50	-0.1
5,345,282	-		GFF5359	0.50	-1.5
5,345,290	+		GFF5359	0.51	-0.8
5,345,298	+		GFF5359	0.51	-1.4
5,345,298	+		GFF5359	0.51	-1.7
5,345,298	-		GFF5359	0.51	-0.5
5,345,298	-		GFF5359	0.51	+0.2
5,345,300	+		GFF5359	0.52	+1.2
5,345,303	-		GFF5359	0.52	+0.7
5,345,306	-		GFF5359	0.52	-0.9
5,345,310	-		GFF5359	0.53	-0.7
5,345,325	-		GFF5359	0.54	-0.8
5,345,348	+		GFF5359	0.56	+0.7
5,345,349	-		GFF5359	0.57	+0.7
5,345,351	-		GFF5359	0.57	-0.8
5,345,354	+		GFF5359	0.57	-0.1
5,345,356	+		GFF5359	0.57	+0.6
5,345,364	+		GFF5359	0.58	-0.8
5,345,364	+		GFF5359	0.58	-1.7
5,345,370	+		GFF5359	0.59	-0.5
5,345,370	+		GFF5359	0.59	+0.2
5,345,370	+		GFF5359	0.59	-1.9
5,345,370	+		GFF5359	0.59	+0.4
5,345,370	+		GFF5359	0.59	-2.0
5,345,370	+		GFF5359	0.59	-0.2
5,345,370	+		GFF5359	0.59	-0.7
5,345,372	+		GFF5359	0.59	-0.0
5,345,372	+		GFF5359	0.59	-0.5
5,345,377	-		GFF5359	0.59	-1.3
5,345,378	-		GFF5359	0.59	+0.9
5,345,380	-		GFF5359	0.60	-1.0
5,345,380	-		GFF5359	0.60	-1.2
5,345,389	+		GFF5359	0.61	+0.1
5,345,389	+		GFF5359	0.61	-1.5
5,345,397	-		GFF5359	0.61	+0.1
5,345,397	-		GFF5359	0.61	+0.7
5,345,397	-		GFF5359	0.61	-1.8
5,345,397	-		GFF5359	0.61	-0.1
5,345,404	-		GFF5359	0.62	-0.4
5,345,417	+		GFF5359	0.63	-0.6
5,345,417	+		GFF5359	0.63	-1.3
5,345,422	+		GFF5359	0.64	-2.1
5,345,422	+		GFF5359	0.64	-0.6
5,345,424	-		GFF5359	0.64	-1.3
5,345,427	+		GFF5359	0.64	-0.3
5,345,427	+		GFF5359	0.64	-1.2
5,345,430	-		GFF5359	0.65	-0.0
5,345,430	-		GFF5359	0.65	-0.6
5,345,430	-		GFF5359	0.65	-2.1
5,345,430	-		GFF5359	0.65	-0.1
5,345,435	+		GFF5359	0.65	-0.7
5,345,435	-		GFF5359	0.65	+0.1
5,345,435	-		GFF5359	0.65	-0.9
5,345,443	-		GFF5359	0.66	-1.7
5,345,449	-		GFF5359	0.67	-1.0
5,345,458	+		GFF5359	0.67	-0.1
5,345,458	+		GFF5359	0.67	-0.3
5,345,466	-		GFF5359	0.68	+0.1
5,345,480	+		GFF5359	0.70	-2.4
5,345,488	-		GFF5359	0.70	+1.1
5,345,500	+		GFF5359	0.72	-0.9
5,345,505	+		GFF5359	0.72	-0.7
5,345,508	-		GFF5359	0.72	-0.9
5,345,508	-		GFF5359	0.72	-0.9
5,345,508	-		GFF5359	0.72	+0.7
5,345,508	-		GFF5359	0.72	-1.3
5,345,508	-		GFF5359	0.72	+0.4
5,345,515	+		GFF5359	0.73	+0.9
5,345,523	-		GFF5359	0.74	-0.3
5,345,549	+		GFF5359	0.77	-1.2
5,345,556	+		GFF5359	0.77	-2.4
5,345,564	-		GFF5359	0.78	-1.7
5,345,564	-		GFF5359	0.78	-1.3
5,345,588	+		GFF5359	0.80	-0.8
5,345,622	+		GFF5359	0.84	-0.8
5,345,630	-		GFF5359	0.85	-2.4
5,345,630	-		GFF5359	0.85	-0.6
5,345,630	-		GFF5359	0.85	-2.3
5,345,637	+		GFF5359	0.85	-0.6
5,345,645	-		GFF5359	0.86	-1.0
5,345,650	-		GFF5359	0.87	-1.1
5,345,650	-		GFF5359	0.87	-1.7
5,345,652	+		GFF5359	0.87	-1.4
5,345,654	+		GFF5359	0.87	-1.4
5,345,655	+		GFF5359	0.87	-2.6
5,345,660	+		GFF5359	0.88	+1.2
5,345,660	+		GFF5359	0.88	-0.5
5,345,660	+		GFF5359	0.88	-0.9
5,345,660	+		GFF5359	0.88	+0.8
5,345,660	+		GFF5359	0.88	-1.7
5,345,662	-		GFF5359	0.88	-0.3
5,345,665	+		GFF5359	0.88	-0.3
5,345,665	+		GFF5359	0.88	-0.8
5,345,670	+		GFF5359	0.89	-0.8
5,345,670	+		GFF5359	0.89	+1.1
5,345,670	+		GFF5359	0.89	-0.0
5,345,670	+		GFF5359	0.89	-1.7
5,345,673	-		GFF5359	0.89	+1.2
5,345,678	-		GFF5359	0.89	-0.4
5,345,689	-				-1.1
5,345,704	+				-1.0
5,345,712	-				-1.9
5,345,712	-				-1.2
5,345,712	-				-0.1
5,345,717	+				-1.9
5,345,722	-				+0.3
5,345,737	+				-1.5
5,345,737	+				+1.1
5,345,757	+				-0.3
5,345,757	+				-1.4
5,345,765	-				-3.2
5,345,765	-				-0.9
5,345,769	-				-1.1
5,345,775	-				-0.0
5,345,775	-				-1.6
5,345,790	-				-0.3
5,345,803	+				+0.0
5,345,808	+				-0.6
5,345,808	+				-0.2
5,345,808	+				-0.7
5,345,808	+				-0.9
5,345,808	+				-0.5
5,345,816	-				-0.8
5,345,816	-				-1.9
5,345,818	+				-1.1
5,345,821	-				-2.2
5,345,828	+				-1.8
5,345,854	+				-0.9
5,345,873	-				+0.4
5,345,903	-				-1.5
5,345,911	+				-1.2
5,345,939	-		GFF5360	0.11	-0.9
5,345,979	+		GFF5360	0.14	-0.5
5,345,979	-		GFF5360	0.14	-0.3
5,345,996	+		GFF5360	0.16	-0.1
5,345,996	+		GFF5360	0.16	-1.3
5,345,996	+		GFF5360	0.16	-2.8
5,345,996	+		GFF5360	0.16	-0.7
5,345,996	+		GFF5360	0.16	-1.7
5,345,996	+		GFF5360	0.16	-1.8
5,345,996	+		GFF5360	0.16	-0.3
5,345,996	+		GFF5360	0.16	-1.3
5,345,996	+		GFF5360	0.16	+0.8
5,345,999	-		GFF5360	0.16	-0.4
5,345,999	-		GFF5360	0.16	-1.5
5,345,999	-		GFF5360	0.16	-0.8
5,345,999	-		GFF5360	0.16	-0.0
5,345,999	-		GFF5360	0.16	+1.6
5,346,004	-		GFF5360	0.16	+0.6
5,346,004	-		GFF5360	0.16	-2.3
5,346,004	-		GFF5360	0.16	-0.9
5,346,004	-		GFF5360	0.16	+0.2
5,346,004	-		GFF5360	0.16	-0.0
5,346,004	-		GFF5360	0.16	-0.9
5,346,004	-		GFF5360	0.16	+0.2
5,346,004	-		GFF5360	0.16	+0.8
5,346,004	-		GFF5360	0.16	-0.2
5,346,004	-		GFF5360	0.16	-1.5
5,346,004	-		GFF5360	0.16	-2.8
5,346,004	-		GFF5360	0.16	-0.2
5,346,022	+		GFF5360	0.17	-2.0
5,346,030	-		GFF5360	0.18	-0.7
5,346,035	+		GFF5360	0.18	-0.8
5,346,050	-		GFF5360	0.19	-2.9
5,346,053	-		GFF5360	0.20	-0.8
5,346,053	-		GFF5360	0.20	-0.7
5,346,067	+		GFF5360	0.21	-2.3
5,346,072	+		GFF5360	0.21	-0.6
5,346,080	-		GFF5360	0.22	-0.4
5,346,080	-		GFF5360	0.22	+0.4
5,346,080	-		GFF5360	0.22	-0.9
5,346,108	+		GFF5360	0.24	-0.1
5,346,118	+		GFF5360	0.24	+0.9
5,346,118	+		GFF5360	0.24	-0.3
5,346,126	-		GFF5360	0.25	-0.5
5,346,129	+		GFF5360	0.25	-0.8
5,346,144	+		GFF5360	0.26	-0.1
5,346,159	+		GFF5360	0.27	-0.7
5,346,159	-		GFF5360	0.27	-0.1
5,346,167	-		GFF5360	0.28	-0.2
5,346,172	-		GFF5360	0.28	-1.0
5,346,206	+		GFF5360	0.31	-1.8
5,346,211	+		GFF5360	0.31	-0.3
5,346,226	-		GFF5360	0.32	-0.9
5,346,239	+		GFF5360	0.33	-0.3
5,346,242	-		GFF5360	0.33	-1.1
5,346,247	-		GFF5360	0.34	+0.1
5,346,253	+		GFF5360	0.34	+0.7
5,346,253	+		GFF5360	0.34	-0.1
5,346,260	+		GFF5360	0.34	+1.0
5,346,261	-		GFF5360	0.35	-3.2
5,346,261	-		GFF5360	0.35	-1.2
5,346,261	-		GFF5360	0.35	+1.7
5,346,268	-		GFF5360	0.35	-0.9
5,346,304	+		GFF5360	0.38	+0.8
5,346,304	+		GFF5360	0.38	-0.4
5,346,304	+		GFF5360	0.38	-0.9
5,346,318	-		GFF5360	0.39	-1.9
5,346,339	+		GFF5360	0.40	-1.4
5,346,349	+		GFF5360	0.41	-0.7
5,346,357	-		GFF5360	0.41	-1.0
5,346,357	-		GFF5360	0.41	-1.8
5,346,367	+		GFF5360	0.42	-1.4
5,346,367	+		GFF5360	0.42	-0.9
5,346,422	-		GFF5360	0.46	-2.9
5,346,436	+		GFF5360	0.47	-0.6
5,346,436	-		GFF5360	0.47	+0.1
5,346,436	-		GFF5360	0.47	-0.7
5,346,451	-		GFF5360	0.48	-0.7
5,346,472	+		GFF5360	0.50	-0.1
5,346,472	+		GFF5360	0.50	-0.8
5,346,472	+		GFF5360	0.50	-2.4
5,346,472	+		GFF5360	0.50	-1.5
5,346,541	+		GFF5360	0.55	+0.1
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5,347,048	-				+1.1
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5,347,064	+				+0.1
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5,347,072	-				+1.3
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5,347,082	-				-1.5
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5,347,907	-				+0.1
5,347,911	+				-0.1
5,347,911	+				+0.1
5,347,924	-				-1.3
5,347,936	-				+0.2
5,348,016	-				-0.2
5,348,021	+				+0.0
5,348,031	+				+0.4
5,348,046	-				+0.5
5,348,055	+				-2.1
5,348,057	+				-0.8
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5,348,072	+				-1.9
5,348,082	+				-1.8
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5,348,085	-				-0.7
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5,348,090	-				-1.2
5,348,107	-				-0.7
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