Strain Fitness in Sphingobium sp. HT1-2 around GFF5315

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,307,223	-		GFF5313	0.67	-0.8
5,307,254	+		GFF5313	0.70	+1.3
5,307,258	-		GFF5313	0.71	-0.1
5,307,260	-		GFF5313	0.71	-1.0
5,307,286	+		GFF5313	0.74	-0.3
5,307,291	+		GFF5313	0.74	-1.4
5,307,291	+		GFF5313	0.74	-0.2
5,307,294	-		GFF5313	0.75	-1.1
5,307,296	+		GFF5313	0.75	+0.3
5,307,304	+		GFF5313	0.76	+0.4
5,307,322	-		GFF5313	0.78	-0.0
5,307,327	-		GFF5313	0.78	-0.0
5,307,354	+		GFF5313	0.81	+1.3
5,307,362	+		GFF5313	0.82	+0.7
5,307,362	+		GFF5313	0.82	+0.6
5,307,362	+		GFF5313	0.82	-0.1
5,307,362	+		GFF5313	0.82	-0.7
5,307,362	+		GFF5313	0.82	+0.3
5,307,362	+		GFF5313	0.82	-0.1
5,307,370	-		GFF5313	0.83	+0.6
5,307,370	-		GFF5313	0.83	-0.7
5,307,370	-		GFF5313	0.83	+0.1
5,307,370	-		GFF5313	0.83	-0.9
5,307,370	-		GFF5313	0.83	-1.7
5,307,370	-		GFF5313	0.83	-2.0
5,307,370	-		GFF5313	0.83	+0.4
5,307,370	-		GFF5313	0.83	-0.9
5,307,370	-		GFF5313	0.83	-0.6
5,307,370	-		GFF5313	0.83	-0.3
5,307,370	-		GFF5313	0.83	-1.0
5,307,381	+		GFF5313	0.84	-0.4
5,307,381	+		GFF5313	0.84	-0.7
5,307,389	-		GFF5313	0.85	+1.5
5,307,389	-		GFF5313	0.85	-0.7
5,307,398	+		GFF5313	0.86	-0.1
5,307,398	+		GFF5313	0.86	-1.9
5,307,406	-		GFF5313	0.87	-1.0
5,307,412	+		GFF5313	0.88	+0.4
5,307,419	+		GFF5313	0.89	-1.8
5,307,420	-		GFF5313	0.89	-0.9
5,307,426	+		GFF5313	0.89	+0.7
5,307,427	-		GFF5313	0.90	-0.2
5,307,462	-				-0.8
5,307,486	-				-1.3
5,307,639	+		GFF5314	0.21	-1.8
5,307,639	+		GFF5314	0.21	-0.6
5,307,639	+		GFF5314	0.21	-0.2
5,307,647	-		GFF5314	0.22	-2.5
5,307,669	-		GFF5314	0.26	+0.2
5,307,677	-		GFF5314	0.27	-1.4
5,307,677	-		GFF5314	0.27	-0.2
5,307,677	-		GFF5314	0.27	-0.4
5,307,677	-		GFF5314	0.27	-0.6
5,307,691	+		GFF5314	0.30	-1.6
5,307,719	+		GFF5314	0.35	-0.0
5,307,719	+		GFF5314	0.35	-1.7
5,307,734	-		GFF5314	0.37	+1.4
5,307,739	-		GFF5314	0.38	+0.2
5,307,759	+		GFF5314	0.41	+0.1
5,307,776	-		GFF5314	0.44	+0.3
5,307,781	-		GFF5314	0.45	-0.6
5,307,846	+		GFF5314	0.57	-1.7
5,307,879	-		GFF5314	0.62	+0.7
5,307,909	+		GFF5314	0.68	+0.2
5,307,909	+		GFF5314	0.68	-0.4
5,307,909	+		GFF5314	0.68	-0.2
5,307,909	+		GFF5314	0.68	-0.6
5,307,964	+		GFF5314	0.77	-0.4
5,307,964	+		GFF5314	0.77	-1.9
5,307,972	-		GFF5314	0.78	+1.7
5,307,972	-		GFF5314	0.78	-0.6
5,307,972	-		GFF5314	0.78	-0.8
5,307,987	-		GFF5314	0.81	+0.4
5,308,004	-		GFF5314	0.84	-0.7
5,308,006	-		GFF5314	0.84	-0.9
5,308,019	+		GFF5314	0.87	+0.4
5,308,051	+				-0.3
5,308,080	+				-0.6
5,308,088	-				-0.8
5,308,108	+				-0.1
5,308,108	+				-0.2
5,308,108	+				+0.6
5,308,116	-				+0.4
5,308,116	-				-1.1
5,308,116	-				-1.4
5,308,176	-				-0.6
5,308,198	-				-0.6
5,308,220	+				+0.1
5,308,220	+				-0.9
5,308,228	-				-2.0
5,308,228	-				-2.2
5,308,228	-				-1.2
5,308,230	+				-0.4
5,308,250	+				-1.3
5,308,250	+				-0.2
5,308,263	+				-1.7
5,308,275	+				-0.1
5,308,288	-				-0.6
5,308,303	+				+1.4
5,308,303	+				-0.1
5,308,303	+				-0.8
5,308,316	-				-0.9
5,308,318	+				-0.2
5,308,326	-				-0.6
5,308,326	-				+1.0
5,308,327	-				-0.6
5,308,334	-				-0.7
5,308,402	+		GFF5315	0.12	-1.1
5,308,402	+		GFF5315	0.12	+0.3
5,308,412	+		GFF5315	0.13	-0.7
5,308,412	+		GFF5315	0.13	-0.1
5,308,420	-		GFF5315	0.13	+0.3
5,308,422	+		GFF5315	0.13	+0.3
5,308,425	-		GFF5315	0.14	+0.2
5,308,435	-		GFF5315	0.14	-0.7
5,308,441	-		GFF5315	0.15	-0.9
5,308,445	-		GFF5315	0.15	-0.7
5,308,445	-		GFF5315	0.15	-1.0
5,308,501	+		GFF5315	0.19	+0.4
5,308,524	+		GFF5315	0.20	-0.6
5,308,524	+		GFF5315	0.20	-1.0
5,308,532	-		GFF5315	0.21	-0.1
5,308,539	+		GFF5315	0.21	-1.1
5,308,547	-		GFF5315	0.22	-1.5
5,308,557	+		GFF5315	0.23	+0.4
5,308,562	+		GFF5315	0.23	+0.2
5,308,605	-		GFF5315	0.26	-1.6
5,308,606	+		GFF5315	0.26	-0.6
5,308,616	+		GFF5315	0.26	-1.2
5,308,616	+		GFF5315	0.26	-0.4
5,308,624	-		GFF5315	0.27	+0.8
5,308,630	-		GFF5315	0.27	-0.6
5,308,634	-		GFF5315	0.28	-1.9
5,308,654	-		GFF5315	0.29	-1.5
5,308,661	-		GFF5315	0.29	-0.7
5,308,681	+		GFF5315	0.31	+2.0
5,308,689	-		GFF5315	0.31	+0.4
5,308,713	+		GFF5315	0.33	-0.0
5,308,713	+		GFF5315	0.33	+0.4
5,308,713	+		GFF5315	0.33	-0.8
5,308,721	-		GFF5315	0.33	+0.4
5,308,721	-		GFF5315	0.33	-1.0
5,308,721	-		GFF5315	0.33	+0.5
5,308,735	-		GFF5315	0.34	-0.6
5,308,735	-		GFF5315	0.34	-1.8
5,308,761	+		GFF5315	0.36	+0.6
5,308,761	+		GFF5315	0.36	-1.1
5,308,761	+		GFF5315	0.36	-0.8
5,308,761	+		GFF5315	0.36	-0.7
5,308,761	+		GFF5315	0.36	-0.4
5,308,769	-		GFF5315	0.37	-0.5
5,308,769	-		GFF5315	0.37	-0.7
5,308,770	+		GFF5315	0.37	-0.3
5,308,794	+		GFF5315	0.38	-0.0
5,308,830	+		GFF5315	0.41	-1.2
5,308,840	+		GFF5315	0.41	-1.2
5,308,840	+		GFF5315	0.41	-0.0
5,308,840	+		GFF5315	0.41	-1.1
5,308,840	+		GFF5315	0.41	+0.1
5,308,840	+		GFF5315	0.41	+0.1
5,308,843	-		GFF5315	0.42	+0.5
5,308,843	-		GFF5315	0.42	-0.4
5,308,850	+		GFF5315	0.42	-0.6
5,308,850	+		GFF5315	0.42	-2.1
5,308,890	-		GFF5315	0.45	+0.1
5,308,895	-		GFF5315	0.45	-1.3
5,308,905	+		GFF5315	0.46	-0.2
5,308,905	+		GFF5315	0.46	+0.2
5,308,905	+		GFF5315	0.46	+1.1
5,308,905	+		GFF5315	0.46	+0.4
5,308,913	-		GFF5315	0.46	-0.0
5,308,913	-		GFF5315	0.46	-1.5
5,308,913	-		GFF5315	0.46	-1.3
5,308,913	-		GFF5315	0.46	-0.8
5,308,913	-		GFF5315	0.46	-1.3
5,308,921	+		GFF5315	0.47	-0.0
5,308,921	+		GFF5315	0.47	-1.4
5,308,938	+		GFF5315	0.48	-0.7
5,308,957	-		GFF5315	0.49	-0.9
5,308,957	-		GFF5315	0.49	+0.3
5,308,991	+		GFF5315	0.52	-1.1
5,309,001	+		GFF5315	0.52	+0.1
5,309,001	+		GFF5315	0.52	-0.8
5,309,009	-		GFF5315	0.53	-0.3
5,309,012	+		GFF5315	0.53	+1.0
5,309,022	+		GFF5315	0.54	-0.5
5,309,022	+		GFF5315	0.54	+0.2
5,309,022	+		GFF5315	0.54	-2.0
5,309,022	+		GFF5315	0.54	+0.2
5,309,022	+		GFF5315	0.54	-1.4
5,309,029	+		GFF5315	0.54	-2.6
5,309,030	-		GFF5315	0.54	-0.2
5,309,030	-		GFF5315	0.54	-0.9
5,309,030	-		GFF5315	0.54	+0.4
5,309,030	-		GFF5315	0.54	-0.9
5,309,030	-		GFF5315	0.54	-0.9
5,309,056	+		GFF5315	0.56	+0.4
5,309,056	+		GFF5315	0.56	-0.5
5,309,071	+		GFF5315	0.57	-0.0
5,309,080	-		GFF5315	0.57	+0.1
5,309,086	+		GFF5315	0.58	-0.8
5,309,094	-		GFF5315	0.58	+0.7
5,309,156	-		GFF5315	0.63	+0.2
5,309,169	-		GFF5315	0.63	-0.2
5,309,180	+		GFF5315	0.64	-0.0
5,309,188	+		GFF5315	0.65	-1.4
5,309,196	-		GFF5315	0.65	+0.4
5,309,196	-		GFF5315	0.65	+0.9
5,309,196	-		GFF5315	0.65	-0.8
5,309,216	-		GFF5315	0.67	-0.8
5,309,216	-		GFF5315	0.67	-0.1
5,309,216	-		GFF5315	0.67	-1.0
5,309,219	+		GFF5315	0.67	-0.6
5,309,224	+		GFF5315	0.67	-1.2
5,309,234	-		GFF5315	0.68	-0.0
5,309,234	-		GFF5315	0.68	-1.5
5,309,237	+		GFF5315	0.68	-2.0
5,309,245	-		GFF5315	0.68	-0.6
5,309,263	+		GFF5315	0.70	-1.5
5,309,271	-		GFF5315	0.70	-0.7
5,309,320	+		GFF5315	0.73	+0.3
5,309,323	-		GFF5315	0.74	-0.5
5,309,325	+		GFF5315	0.74	-0.0
5,309,332	+		GFF5315	0.74	-1.5
5,309,338	-		GFF5315	0.75	-0.5
5,309,344	+		GFF5315	0.75	-0.6
5,309,350	+		GFF5315	0.75	-0.9
5,309,365	-		GFF5315	0.76	-1.1
5,309,367	+		GFF5315	0.77	-0.7
5,309,376	+		GFF5315	0.77	-0.4
5,309,384	-		GFF5315	0.78	+1.1
5,309,412	+		GFF5315	0.80	-1.1
5,309,502	+		GFF5315	0.86	-0.1
5,309,519	-		GFF5315	0.87	-2.8
5,309,591	-				+0.6
5,309,591	-				-2.0
5,309,597	+				+0.1
5,309,605	-				-0.8
5,309,610	-				-0.3
5,309,677	+				-1.4
5,309,677	+				-0.5
5,309,677	+				+1.3
5,309,677	+				+0.2
5,309,685	-				-0.7
5,309,685	-				-1.0
5,309,685	-				-0.8
5,309,694	+				-2.2
5,309,706	+				-0.6
5,309,713	-				-1.1
5,309,735	-				-1.7
5,309,735	-				-0.3
5,309,736	-				-0.9
5,309,760	+				+0.7
5,309,760	+				-0.4
5,309,768	-				-0.6
5,309,768	-				-0.2
5,309,768	-				+0.3
5,309,768	-				+1.9
5,309,768	-				-1.7
5,309,777	+				-0.9
5,309,798	+				-0.3
5,309,806	-				-0.8
5,309,806	-				-1.0
5,309,808	+				-1.3
5,309,833	-				-0.0
5,309,843	+				-1.0
5,309,858	+				+0.4
5,309,858	+				-0.6
5,309,866	-				-2.3
5,309,872	-				-0.6
5,309,886	-				-0.6
5,309,897	+				+0.3
5,309,906	+				-0.2
5,309,911	+				-1.3
5,309,911	+				+0.4
5,309,914	-				-1.8
5,309,914	-				+1.0
5,309,919	-				+0.4
5,309,919	-				-1.4
5,309,919	-				-0.8
5,309,919	-				+1.3
5,309,921	+				-0.8
5,309,929	-				+1.5
5,309,929	-				+1.1
5,309,929	-				+1.2
5,309,929	-				+0.0
5,309,939	+		GFF5316	0.10	+1.0
5,309,940	+		GFF5316	0.10	+0.4
5,309,949	+		GFF5316	0.11	-1.5
5,309,949	+		GFF5316	0.11	-0.0
5,309,949	+		GFF5316	0.11	-0.7
5,309,952	-		GFF5316	0.11	-1.1
5,309,957	-		GFF5316	0.11	+1.3
5,309,957	-		GFF5316	0.11	+0.7
5,309,957	-		GFF5316	0.11	-1.5
5,309,989	+		GFF5316	0.14	+0.7
5,310,007	+		GFF5316	0.15	+0.5
5,310,007	+		GFF5316	0.15	+0.7
5,310,012	+		GFF5316	0.15	-1.6
5,310,044	+		GFF5316	0.17	+0.2
5,310,085	-		GFF5316	0.20	+0.4
5,310,092	+		GFF5316	0.21	-0.8
5,310,094	+		GFF5316	0.21	-0.7
5,310,102	+		GFF5316	0.21	+0.1
5,310,102	+		GFF5316	0.21	-2.0
5,310,110	-		GFF5316	0.22	+0.2
5,310,123	-		GFF5316	0.23	-0.4
5,310,137	+		GFF5316	0.24	-0.6
5,310,137	+		GFF5316	0.24	-0.3
5,310,137	+		GFF5316	0.24	+0.1
5,310,137	+		GFF5316	0.24	-1.9
5,310,137	+		GFF5316	0.24	-0.3
5,310,137	+		GFF5316	0.24	+0.5
5,310,142	+		GFF5316	0.24	-0.0
5,310,145	-		GFF5316	0.24	-0.4
5,310,145	-		GFF5316	0.24	-0.6
5,310,145	-		GFF5316	0.24	-1.5
5,310,145	-		GFF5316	0.24	+0.9
5,310,145	-		GFF5316	0.24	+0.4
5,310,145	-		GFF5316	0.24	+0.1
5,310,145	-		GFF5316	0.24	-0.6
5,310,145	-		GFF5316	0.24	-1.4
5,310,145	-		GFF5316	0.24	-1.2
5,310,161	+		GFF5316	0.25	-1.9
5,310,161	+		GFF5316	0.25	-1.7
5,310,161	+		GFF5316	0.25	-0.5
5,310,191	+		GFF5316	0.27	-0.1
5,310,199	-		GFF5316	0.28	-1.0
5,310,228	+		GFF5316	0.30	-0.1
5,310,234	-		GFF5316	0.30	-0.6
5,310,236	-		GFF5316	0.30	-0.6
5,310,236	-		GFF5316	0.30	-0.3
5,310,236	-		GFF5316	0.30	-0.8
5,310,236	-		GFF5316	0.30	+0.4
5,310,236	-		GFF5316	0.30	-0.9
5,310,256	+		GFF5316	0.32	+0.2
5,310,256	+		GFF5316	0.32	+1.2
5,310,256	+		GFF5316	0.32	+0.8
5,310,302	-		GFF5316	0.35	-1.1
5,310,359	+		GFF5316	0.39	-0.7
5,310,372	+		GFF5316	0.40	+0.6
5,310,387	+		GFF5316	0.41	-0.9
5,310,414	+		GFF5316	0.43	-0.5
5,310,419	+		GFF5316	0.43	-1.6
5,310,419	+		GFF5316	0.43	-0.3
5,310,421	+		GFF5316	0.43	-2.1
5,310,427	-		GFF5316	0.43	-0.0
5,310,448	+		GFF5316	0.45	-0.6
5,310,450	-		GFF5316	0.45	-0.1
5,310,450	-		GFF5316	0.45	+0.3
5,310,452	+		GFF5316	0.45	-1.4
5,310,460	-		GFF5316	0.46	+0.1
5,310,474	+		GFF5316	0.47	-2.0
5,310,474	+		GFF5316	0.47	-1.1
5,310,475	-		GFF5316	0.47	-0.8
5,310,482	-		GFF5316	0.47	-0.4
5,310,482	-		GFF5316	0.47	-0.1
5,310,482	-		GFF5316	0.47	+0.3
5,310,499	-		GFF5316	0.48	+1.4
5,310,502	+		GFF5316	0.49	+1.2
5,310,503	+		GFF5316	0.49	-0.9
5,310,513	-		GFF5316	0.49	+1.2
5,310,538	+		GFF5316	0.51	-1.0
5,310,540	+		GFF5316	0.51	-1.4
5,310,555	+		GFF5316	0.52	+1.4
5,310,555	+		GFF5316	0.52	-0.7
5,310,555	+		GFF5316	0.52	-0.0
5,310,555	+		GFF5316	0.52	+1.7
5,310,555	+		GFF5316	0.52	-0.6
5,310,555	+		GFF5316	0.52	-0.7
5,310,558	-		GFF5316	0.52	+0.4
5,310,563	-		GFF5316	0.53	+0.3
5,310,563	-		GFF5316	0.53	-0.3
5,310,563	-		GFF5316	0.53	+1.7
5,310,563	-		GFF5316	0.53	-0.9
5,310,603	-		GFF5316	0.55	-0.1
5,310,638	+		GFF5316	0.58	-0.8
5,310,665	+		GFF5316	0.60	-0.8
5,310,667	+		GFF5316	0.60	+0.2