Strain Fitness in Sphingobium sp. HT1-2 around GFF528

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
524,880	-				-1.7
524,880	-				+0.8
524,880	-				-1.4
524,880	-				-2.0
524,880	-				+0.5
524,880	-				-1.0
524,880	-				+2.0
524,912	-				+2.1
524,916	+				+0.3
524,928	-				-1.4
524,953	+		GFF527	0.12	-0.5
524,955	-		GFF527	0.12	-1.1
524,970	+		GFF527	0.14	+0.2
524,973	-		GFF527	0.14	+0.8
524,979	+		GFF527	0.15	-0.7
524,989	+		GFF527	0.16	-0.5
524,998	+		GFF527	0.17	-1.2
524,998	+		GFF527	0.17	-1.6
525,012	-		GFF527	0.18	+0.6
525,025	+		GFF527	0.20	+0.6
525,056	-		GFF527	0.23	+1.5
525,078	-		GFF527	0.25	-0.4
525,080	+		GFF527	0.26	-1.0
525,088	-		GFF527	0.27	-0.4
525,112	-		GFF527	0.29	-1.1
525,121	-		GFF527	0.30	+0.5
525,141	+		GFF527	0.32	-1.0
525,141	+		GFF527	0.32	-0.7
525,141	+		GFF527	0.32	-1.0
525,141	+		GFF527	0.32	-1.4
525,149	-		GFF527	0.33	+1.6
525,149	-		GFF527	0.33	+0.3
525,149	-		GFF527	0.33	-1.0
525,149	-		GFF527	0.33	+0.3
525,149	-		GFF527	0.33	-1.8
525,149	-		GFF527	0.33	-0.5
525,149	-		GFF527	0.33	-1.0
525,151	+		GFF527	0.33	+1.0
525,159	+		GFF527	0.34	-0.3
525,196	-		GFF527	0.38	-1.3
525,272	+		GFF527	0.46	-2.2
525,289	+		GFF527	0.48	-1.5
525,289	+		GFF527	0.48	-2.5
525,289	+		GFF527	0.48	+0.1
525,289	+		GFF527	0.48	+1.0
525,289	+		GFF527	0.48	-1.7
525,297	-		GFF527	0.49	-0.6
525,297	-		GFF527	0.49	+0.8
525,297	-		GFF527	0.49	+0.2
525,302	+		GFF527	0.50	-1.0
525,326	-		GFF527	0.52	-1.1
525,330	-		GFF527	0.53	+1.5
525,348	+		GFF527	0.55	+0.0
525,371	-		GFF527	0.57	-0.1
525,373	+		GFF527	0.57	-0.5
525,373	+		GFF527	0.57	-1.7
525,373	+		GFF527	0.57	-0.4
525,373	+		GFF527	0.57	+0.9
525,373	+		GFF527	0.57	-1.2
525,373	+		GFF527	0.57	-1.9
525,373	+		GFF527	0.57	+1.8
525,373	+		GFF527	0.57	+0.8
525,373	+		GFF527	0.57	+0.8
525,373	+		GFF527	0.57	+0.7
525,373	+		GFF527	0.57	-0.6
525,373	+		GFF527	0.57	-0.7
525,373	+		GFF527	0.57	-0.5
525,373	+		GFF527	0.57	-3.2
525,373	+		GFF527	0.57	-0.9
525,379	+		GFF527	0.58	-0.3
525,379	+		GFF527	0.58	-0.0
525,381	-		GFF527	0.58	+2.2
525,381	-		GFF527	0.58	-0.9
525,381	-		GFF527	0.58	-0.4
525,381	-		GFF527	0.58	+0.3
525,381	-		GFF527	0.58	-0.3
525,381	-		GFF527	0.58	+1.8
525,381	-		GFF527	0.58	-1.0
525,381	-		GFF527	0.58	+1.0
525,381	-		GFF527	0.58	+0.1
525,381	-		GFF527	0.58	-0.4
525,381	-		GFF527	0.58	-1.9
525,387	-		GFF527	0.59	-0.2
525,393	+		GFF527	0.60	-1.0
525,393	+		GFF527	0.60	-1.7
525,401	-		GFF527	0.60	-0.5
525,401	-		GFF527	0.60	+0.1
525,413	+		GFF527	0.62	-1.0
525,421	-		GFF527	0.63	-1.7
525,451	+		GFF527	0.66	+0.3
525,455	+		GFF527	0.66	+0.2
525,487	-		GFF527	0.70	-0.9
525,510	-		GFF527	0.72	+0.6
525,516	+		GFF527	0.73	-1.4
525,516	+		GFF527	0.73	-0.1
525,518	+		GFF527	0.73	-0.6
525,524	-		GFF527	0.74	-0.4
525,527	+		GFF527	0.74	-1.8
525,535	-		GFF527	0.75	+0.1
525,537	+		GFF527	0.75	-0.2
525,537	+		GFF527	0.75	-0.2
525,537	+		GFF527	0.75	+1.2
525,537	+		GFF527	0.75	-1.9
525,545	-		GFF527	0.76	-1.0
525,552	+		GFF527	0.77	-0.8
525,557	+		GFF527	0.77	-0.6
525,560	-		GFF527	0.78	+1.1
525,562	-		GFF527	0.78	+0.3
525,570	+		GFF527	0.79	+0.3
525,578	-		GFF527	0.80	+1.3
525,578	-		GFF527	0.80	-0.2
525,583	-		GFF527	0.80	-0.9
525,609	-		GFF527	0.83	+0.8
525,631	-		GFF527	0.85	-1.1
525,668	+		GFF527	0.89	+0.8
525,668	+		GFF527	0.89	-1.3
525,668	+		GFF527	0.89	+1.3
525,668	+		GFF527	0.89	-0.9
525,668	+		GFF527	0.89	-1.5
525,668	+		GFF527	0.89	-0.9
525,668	+		GFF527	0.89	-0.3
525,668	+		GFF527	0.89	+1.5
525,668	+		GFF527	0.89	-0.9
525,668	+		GFF527	0.89	-1.5
525,668	+		GFF527	0.89	+0.3
525,668	+		GFF527	0.89	-0.2
525,668	+		GFF527	0.89	-0.1
525,668	+		GFF527	0.89	+0.4
525,676	-				-0.8
525,676	-				+0.2
525,676	-				-1.0
525,676	-				+0.4
525,676	-				-0.2
525,676	-				+0.9
525,676	-				-0.7
525,676	-				-2.0
525,676	-				-1.5
525,676	-				+0.9
525,690	-				-0.5
525,736	+				-0.2
525,744	-				-2.0
525,769	-				+1.5
525,779	-				+0.5
525,779	-				-0.4
525,785	+				-0.8
525,785	+				+1.0
525,795	-				-0.6
525,831	+				-0.6
525,831	+				+0.5
525,891	+				+0.1
525,892	-				-0.0
525,895	+				+0.2
525,930	+				+0.6
525,938	+				-0.5
525,951	-				-0.4
525,956	+				+0.2
525,964	-				-0.2
525,964	-				+0.5
525,964	-				-0.2
525,969	-				-1.9
525,982	-				-1.8
526,002	+		GFF528	0.11	-1.5
526,004	+		GFF528	0.11	-1.2
526,005	-		GFF528	0.11	-0.4
526,010	-		GFF528	0.11	-0.6
526,010	-		GFF528	0.11	-0.8
526,010	-		GFF528	0.11	+0.4
526,010	-		GFF528	0.11	+0.9
526,011	+		GFF528	0.11	+2.0
526,012	-		GFF528	0.12	-0.5
526,016	+		GFF528	0.12	-1.0
526,016	+		GFF528	0.12	-0.9
526,038	-		GFF528	0.14	+0.6
526,045	-		GFF528	0.14	-0.6
526,046	-		GFF528	0.15	+1.1
526,047	-		GFF528	0.15	-1.4
526,052	-		GFF528	0.15	-0.4
526,067	-		GFF528	0.16	+0.8
526,067	-		GFF528	0.16	-1.2
526,097	-		GFF528	0.19	-1.5
526,113	+		GFF528	0.20	-1.0
526,119	+		GFF528	0.21	+0.3
526,121	-		GFF528	0.21	-0.2
526,127	-		GFF528	0.22	-0.5
526,129	+		GFF528	0.22	-1.0
526,132	-		GFF528	0.22	+0.6
526,132	-		GFF528	0.22	-0.8
526,137	-		GFF528	0.22	-1.9
526,137	-		GFF528	0.22	-0.2
526,137	-		GFF528	0.22	-1.2
526,144	+		GFF528	0.23	-2.0
526,144	+		GFF528	0.23	-1.0
526,147	-		GFF528	0.23	+1.1
526,152	-		GFF528	0.24	+1.4
526,152	-		GFF528	0.24	-0.2
526,226	+		GFF528	0.30	+0.1
526,231	+		GFF528	0.30	-2.1
526,231	+		GFF528	0.30	+0.2
526,239	-		GFF528	0.31	-0.9
526,242	+		GFF528	0.31	+0.6
526,242	+		GFF528	0.31	-1.0
526,251	-		GFF528	0.32	-1.5
526,252	+		GFF528	0.32	-1.2
526,252	+		GFF528	0.32	-1.6
526,260	-		GFF528	0.33	+0.3
526,260	-		GFF528	0.33	-1.4
526,270	-		GFF528	0.34	+0.6
526,300	+		GFF528	0.36	+0.2
526,300	+		GFF528	0.36	-0.2
526,306	+		GFF528	0.37	-0.6
526,308	-		GFF528	0.37	+0.8
526,308	-		GFF528	0.37	-2.7
526,314	-		GFF528	0.38	-0.6
526,314	-		GFF528	0.38	-0.1
526,318	+		GFF528	0.38	+0.8
526,323	+		GFF528	0.38	-0.5
526,323	+		GFF528	0.38	+1.1
526,341	-		GFF528	0.40	-1.5
526,342	-		GFF528	0.40	-1.6
526,342	-		GFF528	0.40	-1.3
526,389	+		GFF528	0.44	-1.2
526,405	-		GFF528	0.46	+1.5
526,405	-		GFF528	0.46	+0.1
526,405	-		GFF528	0.46	+0.5
526,406	+		GFF528	0.46	-1.5
526,406	+		GFF528	0.46	-0.3
526,437	-		GFF528	0.48	-0.2
526,447	-		GFF528	0.49	-1.0
526,457	-		GFF528	0.50	-2.3
526,472	+		GFF528	0.51	-1.4
526,472	+		GFF528	0.51	-0.2
526,472	+		GFF528	0.51	-0.9
526,472	+		GFF528	0.51	-0.9
526,472	+		GFF528	0.51	-0.8
526,472	+		GFF528	0.51	-1.7
526,475	-		GFF528	0.52	-1.0
526,480	-		GFF528	0.52	-1.0
526,480	-		GFF528	0.52	-0.7
526,480	-		GFF528	0.52	-0.1
526,480	-		GFF528	0.52	-1.5
526,482	+		GFF528	0.52	+0.8
526,482	+		GFF528	0.52	-1.0
526,482	+		GFF528	0.52	+0.1
526,482	+		GFF528	0.52	+0.5
526,482	+		GFF528	0.52	-0.8
526,482	+		GFF528	0.52	-0.3
526,490	-		GFF528	0.53	-1.5
526,490	-		GFF528	0.53	-0.4
526,490	-		GFF528	0.53	-0.5
526,490	-		GFF528	0.53	+1.6
526,495	+		GFF528	0.53	-0.7
526,495	+		GFF528	0.53	-2.9
526,495	+		GFF528	0.53	-1.1
526,501	+		GFF528	0.54	-1.9
526,503	-		GFF528	0.54	+1.0
526,513	-		GFF528	0.55	-1.7
526,517	-		GFF528	0.55	-1.2
526,519	+		GFF528	0.55	-1.0
526,519	+		GFF528	0.55	-1.3
526,530	+		GFF528	0.56	-0.8
526,538	-		GFF528	0.57	-0.8
526,572	+		GFF528	0.60	+0.5
526,602	-		GFF528	0.63	-0.9
526,625	+		GFF528	0.65	-1.4
526,625	+		GFF528	0.65	-0.4
526,625	+		GFF528	0.65	-1.9
526,633	-		GFF528	0.65	-0.8
526,634	+		GFF528	0.65	-0.3
526,642	-		GFF528	0.66	-1.2
526,644	+		GFF528	0.66	-1.3
526,652	-		GFF528	0.67	-0.4
526,659	+		GFF528	0.67	-0.6
526,659	+		GFF528	0.67	+0.2
526,667	-		GFF528	0.68	-0.7
526,688	+		GFF528	0.70	-1.4
526,692	+		GFF528	0.70	-1.1
526,714	+		GFF528	0.72	-0.4
526,714	+		GFF528	0.72	-0.5
526,722	-		GFF528	0.73	+0.8
526,763	-		GFF528	0.76	-1.4
526,783	+		GFF528	0.78	-1.2
526,786	-		GFF528	0.78	-1.5
526,791	+		GFF528	0.79	-0.5
526,795	+		GFF528	0.79	-1.4
526,805	-		GFF528	0.80	-0.2
526,811	+		GFF528	0.81	-0.1
526,819	-		GFF528	0.81	-0.3
526,819	-		GFF528	0.81	-0.2
526,829	+		GFF528	0.82	-1.4
526,831	+		GFF528	0.82	-0.6
526,831	+		GFF528	0.82	-0.2
526,838	-		GFF528	0.83	-1.5
526,839	-		GFF528	0.83	+1.3
526,878	-		GFF528	0.86	+0.8
526,878	-		GFF528	0.86	-0.2
526,904	-		GFF528	0.89	-1.3
526,938	+				+0.8
526,938	+				+1.2
526,938	+				+0.4
526,938	+				-0.3
526,938	+				-0.8
526,938	+				-0.5
526,938	+				-0.0
526,943	+				-0.9
526,943	+				-1.4
526,943	+				-1.0
526,943	+				-0.9
526,943	+				+1.1
526,943	+				+0.2
526,943	+				+0.3
526,946	-				-0.2
526,946	-				-0.6
526,946	-				+0.7
526,946	-				+0.2
526,946	-				-0.4
526,946	-				-1.5
526,951	-				+0.8
526,951	-				+0.6
526,951	-				+0.8
526,951	-				-0.9
526,956	+				+0.1
526,956	+				-1.6
526,963	-				-0.5
526,964	-				-0.2
526,964	-				-0.2
526,964	-				-0.4
526,964	-				-0.9
526,966	+				-0.6
527,024	+				+0.1
527,030	+				-0.6
527,032	-				-1.4
527,036	+				-2.4
527,044	-				-1.9
527,044	-				-0.7
527,046	+				-0.6
527,046	+				+1.7
527,046	+				-1.0
527,046	-				-1.2
527,053	+				-1.4
527,054	-				+1.4
527,106	+		GFF529	0.22	-0.3
527,106	+		GFF529	0.22	-1.1
527,106	+		GFF529	0.22	-1.4
527,106	+		GFF529	0.22	-1.7
527,109	-		GFF529	0.23	-0.6
527,109	-		GFF529	0.23	+1.0
527,114	-		GFF529	0.25	+1.5
527,114	-		GFF529	0.25	-0.8
527,114	-		GFF529	0.25	-0.3
527,114	-		GFF529	0.25	-2.5
527,114	-		GFF529	0.25	-0.5
527,114	-		GFF529	0.25	-0.8
527,132	-		GFF529	0.31	-0.2
527,140	+		GFF529	0.34	-0.9
527,171	+		GFF529	0.45	-0.7
527,197	+		GFF529	0.54	-2.4
527,217	+		GFF529	0.60	-0.5
527,217	+		GFF529	0.60	-0.6
527,217	+		GFF529	0.60	+1.0
527,220	-		GFF529	0.62	+1.0
527,222	+		GFF529	0.62	-0.7
527,225	-		GFF529	0.63	-1.5
527,230	+		GFF529	0.65	-0.4
527,230	-		GFF529	0.65	-0.1
527,238	-		GFF529	0.68	-0.8
527,256	+		GFF529	0.74	+0.1
527,264	-		GFF529	0.77	-0.4
527,264	-		GFF529	0.77	+0.9
527,264	-		GFF529	0.77	-1.8
527,273	-		GFF529	0.80	-0.4
527,280	+		GFF529	0.82	-0.4
527,294	+		GFF529	0.87	-1.1
527,297	-		GFF529	0.88	-0.2
527,300	-		GFF529	0.89	-1.6
527,302	-		GFF529	0.90	-0.9
527,328	-				-0.6
527,328	-				-0.5
527,334	+				-1.3
527,346	+				-0.8
527,351	+				-0.2
527,353	+				-0.2
527,353	+				-1.6
527,353	+				-0.9
527,353	+				+0.5
527,353	+				-0.1
527,353	+				-0.5
527,353	+				-0.6
527,361	-				+1.5
527,361	-				-0.7
527,361	-				-0.9
527,361	-				-0.7
527,361	-				+0.5
527,361	-				-0.9
527,377	-				-1.5
527,409	+				-1.9
527,409	+				-1.0
527,409	-				-0.7
527,417	-				-2.1
527,417	-				-1.1
527,427	+				+0.6
527,427	-				-0.4
527,432	+				-0.4
527,456	+				-0.3
527,464	-		GFF530	0.10	-0.9
527,481	+		GFF530	0.12	-1.3
527,481	+		GFF530	0.12	-0.5
527,481	+		GFF530	0.12	+0.3
527,489	-		GFF530	0.13	+0.3
527,517	-		GFF530	0.16	-1.7
527,526	+		GFF530	0.17	-0.5
527,532	+		GFF530	0.17	-0.6
527,534	+		GFF530	0.18	-0.2
527,534	+		GFF530	0.18	-0.6
527,534	-		GFF530	0.18	-1.1
527,540	-		GFF530	0.18	-0.8
527,578	+		GFF530	0.22	+0.1
527,582	+		GFF530	0.23	-0.5
527,582	+		GFF530	0.23	-0.2
527,586	-		GFF530	0.23	-0.0
527,601	-		GFF530	0.25	-0.7
527,613	-		GFF530	0.26	+0.9
527,627	+		GFF530	0.28	-0.8
527,634	+		GFF530	0.28	-0.6
527,635	-		GFF530	0.29	-1.2
527,688	+		GFF530	0.34	-0.8
527,693	+		GFF530	0.35	-2.0
527,693	+		GFF530	0.35	-1.2
527,693	+		GFF530	0.35	+0.6
527,701	-		GFF530	0.36	-0.2
527,701	-		GFF530	0.36	+0.9
527,706	+		GFF530	0.36	+1.2
527,728	+		GFF530	0.39	-1.1
527,728	+		GFF530	0.39	-0.3
527,765	+		GFF530	0.43	+0.7
527,766	+		GFF530	0.43	-0.7
527,766	+		GFF530	0.43	-0.9
527,768	+		GFF530	0.43	-0.2
527,768	+		GFF530	0.43	+0.4
527,768	+		GFF530	0.43	-0.8
527,768	+		GFF530	0.43	-0.7
527,768	+		GFF530	0.43	-1.0
527,768	+		GFF530	0.43	-1.1
527,768	+		GFF530	0.43	-1.1
527,772	-		GFF530	0.43	-1.6
527,774	-		GFF530	0.44	+0.6
527,774	-		GFF530	0.44	-1.7
527,774	-		GFF530	0.44	-0.9
527,776	-		GFF530	0.44	+0.6
527,776	-		GFF530	0.44	-1.4
527,776	-		GFF530	0.44	-0.6
527,776	-		GFF530	0.44	+0.3
527,776	-		GFF530	0.44	-1.3
527,776	-		GFF530	0.44	-1.0
527,776	-		GFF530	0.44	-0.9
527,776	-		GFF530	0.44	+1.2
527,776	-		GFF530	0.44	+0.2
527,776	-		GFF530	0.44	-1.1
527,776	-		GFF530	0.44	-1.4
527,804	+		GFF530	0.47	+0.6
527,817	+		GFF530	0.48	-0.9
527,825	-		GFF530	0.49	-2.1
527,831	-		GFF530	0.50	-0.2
527,859	-		GFF530	0.53	-1.7
527,875	+		GFF530	0.54	-0.4
527,877	+		GFF530	0.55	-1.7
527,883	-		GFF530	0.55	-0.1
527,883	-		GFF530	0.55	+1.0
527,889	+		GFF530	0.56	-0.4
527,897	-		GFF530	0.57	-0.1
527,909	+		GFF530	0.58	+0.5
527,917	-		GFF530	0.59	-1.1
527,930	+		GFF530	0.60	-0.2
527,938	-		GFF530	0.61	-1.4
527,940	-		GFF530	0.61	+0.2
527,944	+		GFF530	0.62	-1.9
527,945	-		GFF530	0.62	-1.4
527,960	+		GFF530	0.64	-1.0
527,965	+		GFF530	0.64	-0.6
527,968	-		GFF530	0.65	-0.9
527,978	-		GFF530	0.66	+0.1
527,986	+		GFF530	0.66	-1.2
528,007	-		GFF530	0.69	-0.7
528,007	-		GFF530	0.69	-0.7