Strain Fitness in Sphingobium sp. HT1-2 around GFF5235

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,227,942	-				-0.2
5,227,944	+				-1.0
5,227,944	+				-0.7
5,227,944	+				-0.4
5,227,944	+				-0.7
5,227,944	+				+0.0
5,227,949	+				+0.9
5,227,949	+				-0.6
5,227,952	-				-0.7
5,227,952	-				+1.4
5,227,952	-				-1.0
5,227,952	-				-1.3
5,227,952	-				+0.2
5,227,952	-				-2.1
5,227,952	-				+1.7
5,227,954	+				-0.6
5,227,954	+				-1.2
5,227,957	-				-1.0
5,227,957	-				+0.4
5,227,957	-				-2.1
5,227,957	-				+0.7
5,227,957	-				+0.3
5,227,962	-				-1.2
5,227,963	-				-0.6
5,227,974	+				+0.5
5,227,997	-				-0.7
5,228,000	+				-0.1
5,228,000	+				-0.6
5,228,007	-				-1.4
5,228,008	-				-1.4
5,228,019	+				+0.2
5,228,027	-		GFF5234	0.11	-2.3
5,228,034	-		GFF5234	0.11	-1.1
5,228,050	-		GFF5234	0.13	-0.7
5,228,057	-		GFF5234	0.14	-0.7
5,228,062	+		GFF5234	0.14	-0.8
5,228,062	+		GFF5234	0.14	-0.3
5,228,065	-		GFF5234	0.14	+0.2
5,228,076	-		GFF5234	0.16	+0.2
5,228,137	-		GFF5234	0.22	-1.5
5,228,154	+		GFF5234	0.24	-0.8
5,228,154	+		GFF5234	0.24	-0.1
5,228,181	+		GFF5234	0.26	-0.8
5,228,192	+		GFF5234	0.27	-0.2
5,228,218	-		GFF5234	0.30	-1.5
5,228,219	+		GFF5234	0.30	+0.2
5,228,223	+		GFF5234	0.31	-1.0
5,228,231	-		GFF5234	0.31	-0.5
5,228,252	-		GFF5234	0.34	+0.3
5,228,257	-		GFF5234	0.34	-1.6
5,228,257	-		GFF5234	0.34	-1.1
5,228,299	-		GFF5234	0.38	-0.8
5,228,358	+		GFF5234	0.44	-0.9
5,228,363	+		GFF5234	0.45	-2.0
5,228,366	-		GFF5234	0.45	-0.6
5,228,366	-		GFF5234	0.45	-0.0
5,228,368	+		GFF5234	0.45	-1.1
5,228,371	-		GFF5234	0.46	-1.3
5,228,371	-		GFF5234	0.46	+0.9
5,228,376	-		GFF5234	0.46	-0.3
5,228,384	+		GFF5234	0.47	+0.2
5,228,384	+		GFF5234	0.47	-0.9
5,228,389	+		GFF5234	0.48	-1.7
5,228,389	+		GFF5234	0.48	-1.0
5,228,389	+		GFF5234	0.48	+0.1
5,228,394	+		GFF5234	0.48	+0.2
5,228,441	+		GFF5234	0.53	+1.0
5,228,446	+		GFF5234	0.53	-0.8
5,228,447	-		GFF5234	0.53	-1.2
5,228,449	-		GFF5234	0.54	-0.7
5,228,454	-		GFF5234	0.54	-0.8
5,228,454	-		GFF5234	0.54	-2.2
5,228,454	-		GFF5234	0.54	+1.5
5,228,454	-		GFF5234	0.54	-1.0
5,228,458	+		GFF5234	0.55	-0.5
5,228,478	+		GFF5234	0.57	-2.2
5,228,478	+		GFF5234	0.57	+0.2
5,228,486	-		GFF5234	0.57	-0.8
5,228,491	+		GFF5234	0.58	+0.1
5,228,492	+		GFF5234	0.58	-0.5
5,228,492	+		GFF5234	0.58	+0.3
5,228,509	-		GFF5234	0.60	-0.1
5,228,511	-		GFF5234	0.60	-0.8
5,228,524	+		GFF5234	0.61	+1.7
5,228,524	+		GFF5234	0.61	-0.7
5,228,528	-		GFF5234	0.62	-0.8
5,228,533	-		GFF5234	0.62	-0.2
5,228,549	+		GFF5234	0.64	-0.4
5,228,549	+		GFF5234	0.64	-1.1
5,228,553	+		GFF5234	0.64	-0.8
5,228,553	+		GFF5234	0.64	+1.7
5,228,553	+		GFF5234	0.64	+0.2
5,228,553	-		GFF5234	0.64	-1.3
5,228,557	-		GFF5234	0.65	-1.5
5,228,558	+		GFF5234	0.65	-0.7
5,228,561	-		GFF5234	0.65	-0.7
5,228,561	-		GFF5234	0.65	-0.0
5,228,561	-		GFF5234	0.65	-1.1
5,228,566	-		GFF5234	0.66	+0.4
5,228,571	-		GFF5234	0.66	+0.0
5,228,599	+		GFF5234	0.69	+0.4
5,228,599	+		GFF5234	0.69	-0.8
5,228,603	+		GFF5234	0.69	+0.6
5,228,607	-		GFF5234	0.70	-2.6
5,228,636	-		GFF5234	0.73	-0.4
5,228,645	+		GFF5234	0.74	-0.3
5,228,645	+		GFF5234	0.74	-1.3
5,228,645	+		GFF5234	0.74	+0.5
5,228,653	-		GFF5234	0.75	+1.6
5,228,653	-		GFF5234	0.75	+0.4
5,228,655	+		GFF5234	0.75	-0.8
5,228,657	+		GFF5234	0.75	+0.4
5,228,657	+		GFF5234	0.75	-1.8
5,228,660	-		GFF5234	0.75	-0.7
5,228,660	-		GFF5234	0.75	-1.1
5,228,665	-		GFF5234	0.76	-1.1
5,228,665	-		GFF5234	0.76	+2.0
5,228,672	+		GFF5234	0.76	-0.8
5,228,682	+		GFF5234	0.78	-0.3
5,228,682	+		GFF5234	0.78	-0.6
5,228,685	-		GFF5234	0.78	-1.8
5,228,685	-		GFF5234	0.78	-0.8
5,228,685	-		GFF5234	0.78	+0.5
5,228,687	+		GFF5234	0.78	+0.2
5,228,687	+		GFF5234	0.78	-1.5
5,228,695	-		GFF5234	0.79	+0.4
5,228,710	-		GFF5234	0.80	-0.8
5,228,720	-		GFF5234	0.81	-0.1
5,228,720	-		GFF5234	0.81	+0.5
5,228,758	-		GFF5234	0.85	-0.7
5,228,798	-		GFF5234	0.89	-0.1
5,228,798	-		GFF5234	0.89	-0.1
5,228,803	-		GFF5234	0.90	+0.9
5,228,811	-				+0.2
5,228,818	+				-0.6
5,228,824	+				-0.7
5,228,825	+				-2.3
5,228,830	+				+0.3
5,228,830	-				-2.1
5,228,844	-				-0.7
5,228,845	-				-0.5
5,228,877	+				+0.1
5,228,880	+				-1.8
5,228,880	+				-1.0
5,228,880	-				+0.5
5,228,901	+				-0.1
5,228,915	-				-0.8
5,228,973	-				-1.4
5,229,005	-				-1.6
5,229,010	-				-1.4
5,229,010	-				-0.7
5,229,016	-				+0.4
5,229,023	+				-0.1
5,229,023	+				-1.5
5,229,031	-				+0.6
5,229,040	+				-1.2
5,229,040	+				-0.2
5,229,043	-				+0.1
5,229,048	-		GFF5235	0.10	+0.4
5,229,048	-		GFF5235	0.10	+0.0
5,229,048	-		GFF5235	0.10	-0.8
5,229,048	-		GFF5235	0.10	-0.2
5,229,048	-		GFF5235	0.10	+1.7
5,229,054	+		GFF5235	0.11	-1.1
5,229,054	+		GFF5235	0.11	-0.7
5,229,054	+		GFF5235	0.11	-0.4
5,229,054	+		GFF5235	0.11	-0.5
5,229,054	+		GFF5235	0.11	+0.0
5,229,054	+		GFF5235	0.11	-1.7
5,229,054	+		GFF5235	0.11	-1.0
5,229,062	-		GFF5235	0.11	+0.4
5,229,062	-		GFF5235	0.11	-0.7
5,229,062	-		GFF5235	0.11	+0.0
5,229,062	-		GFF5235	0.11	-1.2
5,229,062	-		GFF5235	0.11	+0.0
5,229,062	-		GFF5235	0.11	+0.1
5,229,071	+		GFF5235	0.12	-0.7
5,229,081	+		GFF5235	0.13	-1.1
5,229,089	-		GFF5235	0.14	-0.2
5,229,089	-		GFF5235	0.14	-0.7
5,229,089	-		GFF5235	0.14	-0.6
5,229,089	-		GFF5235	0.14	+0.4
5,229,092	+		GFF5235	0.14	-1.0
5,229,092	+		GFF5235	0.14	-0.6
5,229,097	+		GFF5235	0.14	+0.2
5,229,104	-		GFF5235	0.15	-0.7
5,229,105	-		GFF5235	0.15	-0.7
5,229,105	-		GFF5235	0.15	+0.2
5,229,130	+		GFF5235	0.17	-1.0
5,229,130	-		GFF5235	0.17	-0.7
5,229,184	+		GFF5235	0.21	-0.8
5,229,184	+		GFF5235	0.21	-1.1
5,229,192	-		GFF5235	0.22	-0.3
5,229,192	-		GFF5235	0.22	-1.2
5,229,192	-		GFF5235	0.22	+1.2
5,229,194	+		GFF5235	0.22	-1.0
5,229,195	+		GFF5235	0.22	-1.7
5,229,196	+		GFF5235	0.22	+0.4
5,229,203	-		GFF5235	0.23	-2.4
5,229,203	-		GFF5235	0.23	-2.4
5,229,234	+		GFF5235	0.25	+0.3
5,229,241	+		GFF5235	0.26	-2.1
5,229,243	+		GFF5235	0.26	-2.3
5,229,285	-		GFF5235	0.29	+0.9
5,229,290	-		GFF5235	0.30	-1.5
5,229,292	+		GFF5235	0.30	+1.0
5,229,292	+		GFF5235	0.30	-1.1
5,229,300	-		GFF5235	0.31	-1.6
5,229,300	-		GFF5235	0.31	-1.1
5,229,300	-		GFF5235	0.31	-0.8
5,229,300	-		GFF5235	0.31	-0.3
5,229,300	-		GFF5235	0.31	+0.2
5,229,302	+		GFF5235	0.31	-0.7
5,229,302	+		GFF5235	0.31	-1.7
5,229,307	+		GFF5235	0.31	+1.4
5,229,310	-		GFF5235	0.31	-0.7
5,229,310	-		GFF5235	0.31	-0.1
5,229,324	+		GFF5235	0.33	+0.3
5,229,332	-		GFF5235	0.33	-0.1
5,229,332	-		GFF5235	0.33	-0.7
5,229,337	+		GFF5235	0.34	+0.5
5,229,350	-		GFF5235	0.35	+1.4
5,229,351	-		GFF5235	0.35	-2.0
5,229,379	+		GFF5235	0.37	-0.9
5,229,380	+		GFF5235	0.37	-0.8
5,229,385	+		GFF5235	0.38	+0.7
5,229,385	+		GFF5235	0.38	-0.4
5,229,385	+		GFF5235	0.38	+0.8
5,229,388	-		GFF5235	0.38	-0.1
5,229,393	-		GFF5235	0.38	+0.1
5,229,393	-		GFF5235	0.38	+0.5
5,229,406	+		GFF5235	0.39	+0.2
5,229,456	+		GFF5235	0.43	+1.8
5,229,472	+		GFF5235	0.45	-2.4
5,229,472	+		GFF5235	0.45	-0.4
5,229,472	+		GFF5235	0.45	-2.1
5,229,472	+		GFF5235	0.45	-0.6
5,229,477	-		GFF5235	0.45	-1.2
5,229,477	-		GFF5235	0.45	-0.4
5,229,480	-		GFF5235	0.45	+1.0
5,229,480	-		GFF5235	0.45	-1.5
5,229,480	-		GFF5235	0.45	-1.8
5,229,480	-		GFF5235	0.45	-1.5
5,229,480	-		GFF5235	0.45	+0.1
5,229,480	-		GFF5235	0.45	-1.7
5,229,480	-		GFF5235	0.45	-1.2
5,229,491	-		GFF5235	0.46	+1.2
5,229,555	-		GFF5235	0.51	-1.2
5,229,557	+		GFF5235	0.51	-0.8
5,229,590	+		GFF5235	0.54	+0.2
5,229,590	+		GFF5235	0.54	-0.5
5,229,590	+		GFF5235	0.54	-0.8
5,229,596	-		GFF5235	0.55	+0.4
5,229,598	-		GFF5235	0.55	+1.6
5,229,598	-		GFF5235	0.55	-0.3
5,229,608	-		GFF5235	0.56	-0.0
5,229,627	-		GFF5235	0.57	-0.8
5,229,632	+		GFF5235	0.58	+0.4
5,229,639	+		GFF5235	0.58	-1.6
5,229,640	-		GFF5235	0.58	-1.0
5,229,647	-		GFF5235	0.59	+1.9
5,229,658	-		GFF5235	0.60	+0.3
5,229,658	-		GFF5235	0.60	-1.4
5,229,660	+		GFF5235	0.60	-0.8
5,229,660	+		GFF5235	0.60	+1.3
5,229,668	-		GFF5235	0.60	+0.9
5,229,668	-		GFF5235	0.60	+0.4
5,229,670	+		GFF5235	0.61	-1.0
5,229,674	+		GFF5235	0.61	+0.5
5,229,680	-		GFF5235	0.61	+0.4
5,229,680	-		GFF5235	0.61	-0.3
5,229,684	+		GFF5235	0.62	+0.2
5,229,701	+		GFF5235	0.63	-1.2
5,229,701	+		GFF5235	0.63	-1.9
5,229,701	+		GFF5235	0.63	-0.2
5,229,708	+		GFF5235	0.64	+0.9
5,229,709	-		GFF5235	0.64	+1.0
5,229,709	-		GFF5235	0.64	+0.3
5,229,709	-		GFF5235	0.64	-0.7
5,229,709	-		GFF5235	0.64	-0.8
5,229,709	-		GFF5235	0.64	-0.1
5,229,709	-		GFF5235	0.64	+0.7
5,229,709	-		GFF5235	0.64	+0.5
5,229,709	-		GFF5235	0.64	+0.6
5,229,716	-		GFF5235	0.64	+0.9
5,229,737	+		GFF5235	0.66	-1.0
5,229,745	-		GFF5235	0.67	-1.1
5,229,745	-		GFF5235	0.67	-1.1
5,229,747	+		GFF5235	0.67	-1.5
5,229,750	-		GFF5235	0.67	-1.7
5,229,750	-		GFF5235	0.67	+0.0
5,229,750	-		GFF5235	0.67	-0.6
5,229,776	+		GFF5235	0.69	+0.4
5,229,793	+		GFF5235	0.71	-1.6
5,229,798	+		GFF5235	0.71	+0.2
5,229,798	+		GFF5235	0.71	-0.6
5,229,798	+		GFF5235	0.71	+0.4
5,229,803	+		GFF5235	0.71	-0.7
5,229,806	-		GFF5235	0.72	-1.4
5,229,806	-		GFF5235	0.72	-1.4
5,229,806	-		GFF5235	0.72	-1.1
5,229,807	+		GFF5235	0.72	-0.7
5,229,807	+		GFF5235	0.72	-2.1
5,229,812	+		GFF5235	0.72	-0.2
5,229,812	+		GFF5235	0.72	-1.5
5,229,812	+		GFF5235	0.72	-0.1
5,229,812	+		GFF5235	0.72	-0.4
5,229,812	+		GFF5235	0.72	-1.6
5,229,817	+		GFF5235	0.72	-0.1
5,229,820	-		GFF5235	0.73	-0.6
5,229,820	-		GFF5235	0.73	+0.5
5,229,820	-		GFF5235	0.73	-0.8
5,229,820	-		GFF5235	0.73	-0.3
5,229,820	-		GFF5235	0.73	+1.0
5,229,820	-		GFF5235	0.73	+0.1
5,229,827	+		GFF5235	0.73	-0.7
5,229,827	+		GFF5235	0.73	-0.8
5,229,846	-		GFF5235	0.75	-0.6
5,229,895	-		GFF5235	0.79	-0.1
5,229,904	+		GFF5235	0.80	-1.5
5,229,921	+		GFF5235	0.81	-1.4
5,229,921	+		GFF5235	0.81	+0.4
5,229,921	+		GFF5235	0.81	+0.2
5,229,953	-		GFF5235	0.83	-1.7
5,229,953	-		GFF5235	0.83	-0.6
5,229,958	-		GFF5235	0.84	-0.8
5,229,968	-		GFF5235	0.85	+0.7
5,229,993	-		GFF5235	0.87	-0.5
5,229,994	-		GFF5235	0.87	-1.0
5,230,030	+		GFF5235	0.90	-0.4
5,230,030	+		GFF5235	0.90	-0.1
5,230,030	+		GFF5235	0.90	-0.7
5,230,030	+		GFF5235	0.90	-0.1
5,230,038	-				-0.1
5,230,038	-				-0.8
5,230,038	-				+1.2
5,230,038	-				+0.6
5,230,038	-				-1.3
5,230,038	-				-0.8
5,230,038	-				-0.7
5,230,050	+				-2.1
5,230,061	+				-1.2
5,230,066	+				-1.1
5,230,066	+				-0.7
5,230,071	+				+1.0
5,230,071	+				+0.0
5,230,074	-				-0.5
5,230,076	+				+0.7
5,230,076	+				-2.1
5,230,076	+				-0.5
5,230,076	+				-2.5
5,230,076	+				-0.4
5,230,076	+				+1.0
5,230,076	+				-0.2
5,230,076	+				+1.0
5,230,076	+				-0.5
5,230,076	+				-0.2
5,230,076	+				-0.9
5,230,076	+				-0.6
5,230,076	+				-1.0
5,230,076	+				-0.5
5,230,076	+				+0.1
5,230,076	+				-1.5
5,230,079	-				-0.1
5,230,079	-				-0.1
5,230,084	-				-0.2
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