Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5212 and GFF5213 overlap by 4 nucleotides GFF5213 and GFF5214 are separated by 27 nucleotides GFF5214 and GFF5215 are separated by 165 nucleotides GFF5215 and GFF5216 overlap by 10 nucleotides
GFF5212 - Acetate kinase (EC 2.7.2.1), at 5,208,478 to 5,209,668
GFF5212
GFF5213 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 5,209,665 to 5,210,438
GFF5213
GFF5214 - hypothetical protein, at 5,210,466 to 5,210,885
GFF5214
GFF5215 - hypothetical protein, at 5,211,051 to 5,211,170
GFF5215
GFF5216 - Sodium-transporting ATPase subunit D, at 5,211,161 to 5,212,573
GFF5216
Position (kb) 5209
5210
5211 Strain fitness (log2 ratio) -2
-1
0
1 at 5208.695 kb on - strand, within GFF5212 at 5208.695 kb on - strand, within GFF5212 at 5208.717 kb on - strand, within GFF5212 at 5208.733 kb on - strand, within GFF5212 at 5208.740 kb on + strand, within GFF5212 at 5208.748 kb on - strand, within GFF5212 at 5208.748 kb on - strand, within GFF5212 at 5208.748 kb on - strand, within GFF5212 at 5208.765 kb on - strand, within GFF5212 at 5208.799 kb on + strand, within GFF5212 at 5208.802 kb on + strand, within GFF5212 at 5208.804 kb on + strand, within GFF5212 at 5208.825 kb on + strand, within GFF5212 at 5208.825 kb on + strand, within GFF5212 at 5208.833 kb on - strand, within GFF5212 at 5208.847 kb on + strand, within GFF5212 at 5208.881 kb on + strand, within GFF5212 at 5208.888 kb on - strand, within GFF5212 at 5208.889 kb on - strand, within GFF5212 at 5208.945 kb on + strand, within GFF5212 at 5208.961 kb on + strand, within GFF5212 at 5208.967 kb on + strand, within GFF5212 at 5208.994 kb on + strand, within GFF5212 at 5209.002 kb on + strand, within GFF5212 at 5209.002 kb on + strand, within GFF5212 at 5209.080 kb on - strand, within GFF5212 at 5209.086 kb on - strand, within GFF5212 at 5209.117 kb on - strand, within GFF5212 at 5209.153 kb on + strand, within GFF5212 at 5209.161 kb on - strand, within GFF5212 at 5209.182 kb on + strand, within GFF5212 at 5209.186 kb on - strand, within GFF5212 at 5209.189 kb on + strand, within GFF5212 at 5209.190 kb on - strand, within GFF5212 at 5209.194 kb on + strand, within GFF5212 at 5209.211 kb on + strand, within GFF5212 at 5209.219 kb on - strand, within GFF5212 at 5209.224 kb on + strand, within GFF5212 at 5209.239 kb on + strand, within GFF5212 at 5209.245 kb on + strand, within GFF5212 at 5209.245 kb on + strand, within GFF5212 at 5209.247 kb on + strand, within GFF5212 at 5209.253 kb on - strand, within GFF5212 at 5209.253 kb on - strand, within GFF5212 at 5209.255 kb on - strand, within GFF5212 at 5209.262 kb on + strand, within GFF5212 at 5209.264 kb on + strand, within GFF5212 at 5209.275 kb on + strand, within GFF5212 at 5209.281 kb on - strand, within GFF5212 at 5209.281 kb on - strand, within GFF5212 at 5209.283 kb on - strand, within GFF5212 at 5209.283 kb on - strand, within GFF5212 at 5209.283 kb on - strand, within GFF5212 at 5209.283 kb on - strand, within GFF5212 at 5209.294 kb on - strand, within GFF5212 at 5209.294 kb on - strand, within GFF5212 at 5209.341 kb on - strand, within GFF5212 at 5209.377 kb on - strand, within GFF5212 at 5209.421 kb on + strand, within GFF5212 at 5209.429 kb on + strand, within GFF5212 at 5209.443 kb on + strand, within GFF5212 at 5209.447 kb on - strand, within GFF5212 at 5209.474 kb on + strand, within GFF5212 at 5209.482 kb on - strand, within GFF5212 at 5209.517 kb on + strand, within GFF5212 at 5209.517 kb on + strand, within GFF5212 at 5209.532 kb on - strand, within GFF5212 at 5209.534 kb on + strand, within GFF5212 at 5209.542 kb on + strand, within GFF5212 at 5209.542 kb on + strand, within GFF5212 at 5209.550 kb on - strand at 5209.550 kb on - strand at 5209.550 kb on - strand at 5209.570 kb on + strand at 5209.570 kb on + strand at 5209.570 kb on + strand at 5209.572 kb on + strand at 5209.572 kb on + strand at 5209.578 kb on - strand at 5209.578 kb on - strand at 5209.580 kb on - strand at 5209.580 kb on - strand at 5209.588 kb on - strand at 5209.592 kb on + strand at 5209.592 kb on + strand at 5209.600 kb on - strand at 5209.624 kb on - strand at 5209.671 kb on - strand at 5209.701 kb on - strand at 5209.712 kb on - strand at 5209.714 kb on - strand at 5209.722 kb on + strand at 5209.747 kb on - strand, within GFF5213 at 5209.753 kb on + strand, within GFF5213 at 5209.753 kb on - strand, within GFF5213 at 5209.755 kb on + strand, within GFF5213 at 5209.761 kb on - strand, within GFF5213 at 5209.803 kb on + strand, within GFF5213 at 5209.840 kb on - strand, within GFF5213 at 5209.842 kb on - strand, within GFF5213 at 5209.843 kb on - strand, within GFF5213 at 5209.850 kb on - strand, within GFF5213 at 5209.894 kb on + strand, within GFF5213 at 5209.904 kb on + strand, within GFF5213 at 5209.904 kb on + strand, within GFF5213 at 5209.912 kb on - strand, within GFF5213 at 5209.912 kb on - strand, within GFF5213 at 5209.912 kb on - strand, within GFF5213 at 5209.912 kb on - strand, within GFF5213 at 5209.932 kb on - strand, within GFF5213 at 5209.951 kb on + strand, within GFF5213 at 5209.998 kb on + strand, within GFF5213 at 5209.998 kb on + strand, within GFF5213 at 5210.006 kb on - strand, within GFF5213 at 5210.006 kb on - strand, within GFF5213 at 5210.015 kb on + strand, within GFF5213 at 5210.023 kb on - strand, within GFF5213 at 5210.083 kb on + strand, within GFF5213 at 5210.086 kb on + strand, within GFF5213 at 5210.096 kb on - strand, within GFF5213 at 5210.113 kb on + strand, within GFF5213 at 5210.143 kb on - strand, within GFF5213 at 5210.153 kb on + strand, within GFF5213 at 5210.153 kb on + strand, within GFF5213 at 5210.161 kb on - strand, within GFF5213 at 5210.161 kb on - strand, within GFF5213 at 5210.203 kb on + strand, within GFF5213 at 5210.231 kb on - strand, within GFF5213 at 5210.231 kb on - strand, within GFF5213 at 5210.233 kb on + strand, within GFF5213 at 5210.241 kb on - strand, within GFF5213 at 5210.241 kb on - strand, within GFF5213 at 5210.252 kb on - strand, within GFF5213 at 5210.259 kb on + strand, within GFF5213 at 5210.283 kb on - strand, within GFF5213 at 5210.283 kb on - strand, within GFF5213 at 5210.306 kb on + strand, within GFF5213 at 5210.318 kb on + strand, within GFF5213 at 5210.318 kb on + strand, within GFF5213 at 5210.318 kb on + strand, within GFF5213 at 5210.326 kb on - strand, within GFF5213 at 5210.332 kb on - strand, within GFF5213 at 5210.343 kb on - strand, within GFF5213 at 5210.408 kb on + strand at 5210.432 kb on + strand at 5210.434 kb on - strand at 5210.435 kb on - strand at 5210.438 kb on + strand at 5210.453 kb on + strand at 5210.565 kb on + strand, within GFF5214 at 5210.592 kb on + strand, within GFF5214 at 5210.667 kb on - strand, within GFF5214 at 5210.669 kb on - strand, within GFF5214 at 5210.752 kb on - strand, within GFF5214 at 5210.757 kb on + strand, within GFF5214 at 5210.772 kb on + strand, within GFF5214 at 5210.780 kb on - strand, within GFF5214 at 5210.875 kb on + strand at 5210.880 kb on + strand at 5210.917 kb on - strand at 5210.938 kb on + strand at 5210.938 kb on + strand at 5210.943 kb on + strand at 5210.943 kb on + strand at 5210.946 kb on - strand at 5210.946 kb on - strand at 5210.946 kb on - strand at 5210.946 kb on - strand at 5210.951 kb on - strand at 5211.016 kb on + strand at 5211.030 kb on - strand at 5211.041 kb on + strand at 5211.056 kb on + strand at 5211.056 kb on + strand at 5211.095 kb on + strand, within GFF5215 at 5211.103 kb on - strand, within GFF5215 at 5211.141 kb on + strand, within GFF5215 at 5211.142 kb on - strand, within GFF5215 at 5211.165 kb on + strand at 5211.173 kb on - strand at 5211.183 kb on - strand at 5211.196 kb on + strand at 5211.206 kb on - strand at 5211.208 kb on + strand at 5211.213 kb on + strand at 5211.213 kb on + strand at 5211.216 kb on - strand at 5211.221 kb on - strand at 5211.221 kb on - strand at 5211.221 kb on - strand at 5211.235 kb on + strand at 5211.245 kb on - strand at 5211.261 kb on + strand at 5211.298 kb on - strand at 5211.306 kb on - strand, within GFF5216 at 5211.308 kb on + strand, within GFF5216 at 5211.313 kb on + strand, within GFF5216 at 5211.316 kb on - strand, within GFF5216 at 5211.316 kb on - strand, within GFF5216 at 5211.316 kb on - strand, within GFF5216 at 5211.316 kb on - strand, within GFF5216 at 5211.316 kb on - strand, within GFF5216 at 5211.355 kb on + strand, within GFF5216 at 5211.431 kb on + strand, within GFF5216 at 5211.431 kb on + strand, within GFF5216 at 5211.437 kb on + strand, within GFF5216
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 5,208,695 - GFF5212 0.18 -0.4 5,208,695 - GFF5212 0.18 +0.8 5,208,717 - GFF5212 0.20 +0.6 5,208,733 - GFF5212 0.21 -1.7 5,208,740 + GFF5212 0.22 -2.0 5,208,748 - GFF5212 0.23 -0.2 5,208,748 - GFF5212 0.23 -1.2 5,208,748 - GFF5212 0.23 -1.6 5,208,765 - GFF5212 0.24 +0.5 5,208,799 + GFF5212 0.27 -0.1 5,208,802 + GFF5212 0.27 -0.6 5,208,804 + GFF5212 0.27 -2.5 5,208,825 + GFF5212 0.29 +0.8 5,208,825 + GFF5212 0.29 -1.0 5,208,833 - GFF5212 0.30 +0.0 5,208,847 + GFF5212 0.31 -0.2 5,208,881 + GFF5212 0.34 +0.6 5,208,888 - GFF5212 0.34 +0.2 5,208,889 - GFF5212 0.35 -0.7 5,208,945 + GFF5212 0.39 -1.6 5,208,961 + GFF5212 0.41 +0.0 5,208,967 + GFF5212 0.41 -0.4 5,208,994 + GFF5212 0.43 +0.2 5,209,002 + GFF5212 0.44 +0.4 5,209,002 + GFF5212 0.44 +0.2 5,209,080 - GFF5212 0.51 +0.7 5,209,086 - GFF5212 0.51 -1.5 5,209,117 - GFF5212 0.54 +0.3 5,209,153 + GFF5212 0.57 +1.4 5,209,161 - GFF5212 0.57 -1.7 5,209,182 + GFF5212 0.59 -1.1 5,209,186 - GFF5212 0.59 -1.4 5,209,189 + GFF5212 0.60 -0.3 5,209,190 - GFF5212 0.60 +0.7 5,209,194 + GFF5212 0.60 -0.1 5,209,211 + GFF5212 0.62 -0.6 5,209,219 - GFF5212 0.62 -0.8 5,209,224 + GFF5212 0.63 -0.4 5,209,239 + GFF5212 0.64 -0.8 5,209,245 + GFF5212 0.64 -0.8 5,209,245 + GFF5212 0.64 -0.6 5,209,247 + GFF5212 0.65 -0.8 5,209,253 - GFF5212 0.65 -0.1 5,209,253 - GFF5212 0.65 -1.1 5,209,255 - GFF5212 0.65 -1.5 5,209,262 + GFF5212 0.66 -1.6 5,209,264 + GFF5212 0.66 +1.2 5,209,275 + GFF5212 0.67 +0.2 5,209,281 - GFF5212 0.67 -0.7 5,209,281 - GFF5212 0.67 +1.0 5,209,283 - GFF5212 0.68 -0.3 5,209,283 - GFF5212 0.68 -1.2 5,209,283 - GFF5212 0.68 -2.0 5,209,283 - GFF5212 0.68 -1.9 5,209,294 - GFF5212 0.69 +0.2 5,209,294 - GFF5212 0.69 +0.1 5,209,341 - GFF5212 0.72 -1.4 5,209,377 - GFF5212 0.75 -0.6 5,209,421 + GFF5212 0.79 +0.1 5,209,429 + GFF5212 0.80 -1.2 5,209,443 + GFF5212 0.81 +0.2 5,209,447 - GFF5212 0.81 +0.1 5,209,474 + GFF5212 0.84 -1.1 5,209,482 - GFF5212 0.84 +0.1 5,209,517 + GFF5212 0.87 -1.3 5,209,517 + GFF5212 0.87 -2.7 5,209,532 - GFF5212 0.88 -1.8 5,209,534 + GFF5212 0.89 -1.8 5,209,542 + GFF5212 0.89 -0.2 5,209,542 + GFF5212 0.89 -0.4 5,209,550 - -1.5 5,209,550 - -0.4 5,209,550 - -0.5 5,209,570 + +0.7 5,209,570 + -0.4 5,209,570 + -0.6 5,209,572 + -0.8 5,209,572 + +0.7 5,209,578 - -0.2 5,209,578 - +0.6 5,209,580 - -1.2 5,209,580 - -1.6 5,209,588 - -1.6 5,209,592 + -2.3 5,209,592 + -0.1 5,209,600 - +0.0 5,209,624 - +0.2 5,209,671 - -0.4 5,209,701 - -0.4 5,209,712 - -0.5 5,209,714 - -0.4 5,209,722 + -0.1 5,209,747 - GFF5213 0.11 +1.3 5,209,753 + GFF5213 0.11 -1.1 5,209,753 - GFF5213 0.11 -0.4 5,209,755 + GFF5213 0.12 -0.3 5,209,761 - GFF5213 0.12 -0.6 5,209,803 + GFF5213 0.18 -0.9 5,209,840 - GFF5213 0.23 -1.0 5,209,842 - GFF5213 0.23 +0.6 5,209,843 - GFF5213 0.23 -0.8 5,209,850 - GFF5213 0.24 +0.8 5,209,894 + GFF5213 0.30 -0.2 5,209,904 + GFF5213 0.31 -0.2 5,209,904 + GFF5213 0.31 -1.2 5,209,912 - GFF5213 0.32 -1.8 5,209,912 - GFF5213 0.32 -1.5 5,209,912 - GFF5213 0.32 -1.7 5,209,912 - GFF5213 0.32 -0.6 5,209,932 - GFF5213 0.34 +0.3 5,209,951 + GFF5213 0.37 -0.2 5,209,998 + GFF5213 0.43 -0.4 5,209,998 + GFF5213 0.43 -0.2 5,210,006 - GFF5213 0.44 -0.7 5,210,006 - GFF5213 0.44 +0.1 5,210,015 + GFF5213 0.45 -1.8 5,210,023 - GFF5213 0.46 -2.4 5,210,083 + GFF5213 0.54 +0.6 5,210,086 + GFF5213 0.54 -1.1 5,210,096 - GFF5213 0.56 -0.7 5,210,113 + GFF5213 0.58 +1.0 5,210,143 - GFF5213 0.62 -1.8 5,210,153 + GFF5213 0.63 +0.6 5,210,153 + GFF5213 0.63 +0.7 5,210,161 - GFF5213 0.64 +0.5 5,210,161 - GFF5213 0.64 -0.5 5,210,203 + GFF5213 0.70 +0.6 5,210,231 - GFF5213 0.73 -0.4 5,210,231 - GFF5213 0.73 -1.4 5,210,233 + GFF5213 0.73 +0.4 5,210,241 - GFF5213 0.74 -1.4 5,210,241 - GFF5213 0.74 +0.2 5,210,252 - GFF5213 0.76 -0.7 5,210,259 + GFF5213 0.77 +0.1 5,210,283 - GFF5213 0.80 -1.2 5,210,283 - GFF5213 0.80 -0.6 5,210,306 + GFF5213 0.83 +0.1 5,210,318 + GFF5213 0.84 -0.2 5,210,318 + GFF5213 0.84 -0.7 5,210,318 + GFF5213 0.84 +1.0 5,210,326 - GFF5213 0.85 +0.6 5,210,332 - GFF5213 0.86 -1.8 5,210,343 - GFF5213 0.88 +1.4 5,210,408 + -1.8 5,210,432 + +1.4 5,210,434 - -1.0 5,210,435 - +0.1 5,210,438 + -1.6 5,210,453 + -1.2 5,210,565 + GFF5214 0.24 +1.4 5,210,592 + GFF5214 0.30 -1.1 5,210,667 - GFF5214 0.48 -0.5 5,210,669 - GFF5214 0.48 +0.9 5,210,752 - GFF5214 0.68 -1.7 5,210,757 + GFF5214 0.69 +0.3 5,210,772 + GFF5214 0.73 +1.4 5,210,780 - GFF5214 0.75 -1.4 5,210,875 + -0.6 5,210,880 + -1.2 5,210,917 - -0.5 5,210,938 + -1.0 5,210,938 + +0.2 5,210,943 + -0.7 5,210,943 + +0.8 5,210,946 - -0.4 5,210,946 - +0.1 5,210,946 - -1.7 5,210,946 - +0.6 5,210,951 - -0.1 5,211,016 + -0.6 5,211,030 - -0.2 5,211,041 + +0.4 5,211,056 + -0.7 5,211,056 + -0.3 5,211,095 + GFF5215 0.37 +0.9 5,211,103 - GFF5215 0.43 +0.0 5,211,141 + GFF5215 0.75 +1.0 5,211,142 - GFF5215 0.76 -0.6 5,211,165 + +0.4 5,211,173 - +0.8 5,211,183 - -0.7 5,211,196 + +0.5 5,211,206 - +0.5 5,211,208 + -1.4 5,211,213 + -1.4 5,211,213 + +0.3 5,211,216 - -0.6 5,211,221 - -0.8 5,211,221 - +1.4 5,211,221 - +0.4 5,211,235 + -0.7 5,211,245 - -0.6 5,211,261 + -1.0 5,211,298 - -0.7 5,211,306 - GFF5216 0.10 +0.7 5,211,308 + GFF5216 0.10 -0.7 5,211,313 + GFF5216 0.11 -1.5 5,211,316 - GFF5216 0.11 -1.4 5,211,316 - GFF5216 0.11 +0.4 5,211,316 - GFF5216 0.11 -1.1 5,211,316 - GFF5216 0.11 +0.4 5,211,316 - GFF5216 0.11 -0.4 5,211,355 + GFF5216 0.14 +0.3 5,211,431 + GFF5216 0.19 -2.1 5,211,431 + GFF5216 0.19 -1.1 5,211,437 + GFF5216 0.20 -0.6
Or see this region's nucleotide sequence