Strain Fitness in Sphingobium sp. HT1-2 around GFF5181

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,174,714	+		GFF5179	0.87	-0.6
5,174,717	-		GFF5179	0.87	-1.5
5,174,717	-		GFF5179	0.87	-0.6
5,174,727	+		GFF5179	0.87	-0.7
5,174,727	+		GFF5179	0.87	+0.0
5,174,735	-		GFF5179	0.88	-0.5
5,174,746	+		GFF5179	0.88	-0.2
5,174,756	+		GFF5179	0.89	-1.0
5,174,756	+		GFF5179	0.89	+0.4
5,174,756	+		GFF5179	0.89	-0.1
5,174,756	+		GFF5179	0.89	-1.1
5,174,756	+		GFF5179	0.89	-1.0
5,174,759	-		GFF5179	0.89	-1.4
5,174,759	-		GFF5179	0.89	+0.2
5,174,761	+		GFF5179	0.89	-0.2
5,174,762	-		GFF5179	0.89	+0.0
5,174,764	-		GFF5179	0.89	-2.2
5,174,764	-		GFF5179	0.89	-0.4
5,174,764	-		GFF5179	0.89	-2.3
5,174,766	+		GFF5179	0.89	-1.0
5,174,769	-		GFF5179	0.89	-1.1
5,174,769	-		GFF5179	0.89	-1.0
5,174,769	-		GFF5179	0.89	-1.2
5,174,779	-		GFF5179	0.90	-1.4
5,174,779	-		GFF5179	0.90	+2.0
5,174,786	+				-2.3
5,174,800	-				+1.0
5,174,830	+				-2.2
5,174,838	-				-1.5
5,174,838	-				-1.1
5,174,838	-				-0.9
5,174,841	-				+0.7
5,174,848	-				-1.3
5,174,877	-				-1.7
5,174,877	-				-2.0
5,174,877	-				-2.3
5,174,877	-				-1.1
5,174,884	-				-1.2
5,174,896	-				-0.8
5,174,899	+				-0.7
5,174,903	-				-0.4
5,174,915	+				-1.5
5,174,915	+				+0.0
5,174,925	+				-1.1
5,174,925	+				-1.9
5,174,932	-				-0.4
5,174,933	-				-0.7
5,174,934	-				-0.6
5,174,968	+				+0.6
5,174,976	-				-3.1
5,174,980	-				-1.7
5,174,986	-				-0.9
5,174,996	+				-0.6
5,174,996	+				-1.0
5,174,996	+				-1.1
5,175,001	+				-0.8
5,175,004	-				-0.3
5,175,004	-				+0.5
5,175,004	-				-1.6
5,175,044	-				-0.6
5,175,047	-				-0.8
5,175,074	+		GFF5180	0.12	+0.2
5,175,084	+		GFF5180	0.13	-2.3
5,175,084	+		GFF5180	0.13	-1.7
5,175,092	-		GFF5180	0.15	-1.8
5,175,115	-		GFF5180	0.19	-0.1
5,175,117	+		GFF5180	0.19	-0.3
5,175,122	+		GFF5180	0.20	-2.2
5,175,125	-		GFF5180	0.20	-2.2
5,175,125	-		GFF5180	0.20	-1.3
5,175,128	+		GFF5180	0.21	+0.7
5,175,129	+		GFF5180	0.21	-2.0
5,175,133	+		GFF5180	0.22	-1.6
5,175,141	-		GFF5180	0.23	-1.3
5,175,143	+		GFF5180	0.23	-0.8
5,175,143	+		GFF5180	0.23	-0.2
5,175,157	-		GFF5180	0.26	-1.0
5,175,164	+		GFF5180	0.27	-1.4
5,175,164	+		GFF5180	0.27	-0.6
5,175,177	-		GFF5180	0.29	-1.2
5,175,229	+		GFF5180	0.38	+0.6
5,175,239	-		GFF5180	0.39	-1.2
5,175,266	+		GFF5180	0.44	+0.1
5,175,274	-		GFF5180	0.45	-1.6
5,175,280	+		GFF5180	0.46	-1.3
5,175,294	+		GFF5180	0.49	-1.7
5,175,297	-		GFF5180	0.49	+0.4
5,175,299	+		GFF5180	0.49	+0.4
5,175,299	+		GFF5180	0.49	-0.3
5,175,299	+		GFF5180	0.49	-0.7
5,175,299	+		GFF5180	0.49	-2.5
5,175,299	+		GFF5180	0.49	+0.4
5,175,302	-		GFF5180	0.50	-0.7
5,175,302	-		GFF5180	0.50	-1.5
5,175,302	-		GFF5180	0.50	-0.1
5,175,304	+		GFF5180	0.50	+1.1
5,175,307	-		GFF5180	0.51	-0.1
5,175,307	-		GFF5180	0.51	-2.3
5,175,307	-		GFF5180	0.51	+0.5
5,175,307	-		GFF5180	0.51	-2.3
5,175,308	-		GFF5180	0.51	-2.0
5,175,346	+		GFF5180	0.57	-0.9
5,175,348	+		GFF5180	0.58	-0.8
5,175,348	+		GFF5180	0.58	-1.1
5,175,348	+		GFF5180	0.58	-1.7
5,175,348	+		GFF5180	0.58	-0.4
5,175,354	-		GFF5180	0.59	-1.4
5,175,354	-		GFF5180	0.59	-0.8
5,175,354	-		GFF5180	0.59	-2.0
5,175,356	-		GFF5180	0.59	+0.5
5,175,356	-		GFF5180	0.59	-0.0
5,175,356	-		GFF5180	0.59	-0.8
5,175,356	-		GFF5180	0.59	-1.3
5,175,365	-		GFF5180	0.61	-1.8
5,175,397	-		GFF5180	0.66	-1.6
5,175,431	-		GFF5180	0.72	-2.0
5,175,469	-		GFF5180	0.78	-0.3
5,175,482	+		GFF5180	0.80	+0.3
5,175,497	+		GFF5180	0.83	-1.1
5,175,512	+		GFF5180	0.85	-1.8
5,175,520	-		GFF5180	0.87	-1.5
5,175,539	-				-1.2
5,175,541	+				-0.9
5,175,549	+				-1.7
5,175,557	-				-1.2
5,175,558	-				-2.2
5,175,563	+				+0.5
5,175,569	-				+1.5
5,175,571	-				-0.7
5,175,571	-				-0.2
5,175,586	+				-0.7
5,175,588	+				+0.4
5,175,588	+				-1.1
5,175,588	+				-1.5
5,175,593	+				-0.9
5,175,598	+				-1.5
5,175,598	+				-1.6
5,175,598	+				+1.7
5,175,601	-				-0.7
5,175,603	-				+0.0
5,175,624	-				-2.0
5,175,644	+				-1.9
5,175,646	-				-1.1
5,175,652	+				-0.4
5,175,652	-				-0.8
5,175,652	-				+0.2
5,175,655	-				-0.3
5,175,656	+				-0.8
5,175,656	+				-1.7
5,175,664	-				+0.6
5,175,666	+				+0.0
5,175,666	+				-0.7
5,175,674	+				-3.1
5,175,674	+				+1.0
5,175,682	-				-2.3
5,175,708	+				-0.7
5,175,716	-				-2.1
5,175,724	+				-0.5
5,175,725	+				+0.3
5,175,734	-		GFF5181	0.12	+0.1
5,175,744	-		GFF5181	0.17	-1.1
5,175,745	+		GFF5181	0.18	-1.0
5,175,752	+		GFF5181	0.21	+0.2
5,175,752	+		GFF5181	0.21	-0.6
5,175,753	+		GFF5181	0.22	-2.2
5,175,780	-		GFF5181	0.36	-1.6
5,175,789	+		GFF5181	0.41	-1.3
5,175,789	+		GFF5181	0.41	-0.8
5,175,818	-		GFF5181	0.56	-1.7
5,175,827	+		GFF5181	0.60	-1.0
5,175,849	-		GFF5181	0.72	+0.7
5,175,859	+		GFF5181	0.77	-1.5
5,175,859	-		GFF5181	0.77	-1.6
5,175,861	+		GFF5181	0.78	-1.0
5,175,869	-		GFF5181	0.82	+0.9
5,175,884	-				+0.2
5,175,884	-				-1.1
5,175,904	+				-0.5
5,175,909	+				-0.6
5,175,912	-				-0.6
5,175,912	-				-1.1
5,175,934	+				+0.9
5,175,942	-				-0.9
5,175,951	+				+0.3
5,175,954	+				+0.2
5,175,959	+				-0.7
5,175,959	+				-0.3
5,175,959	+				+0.5
5,175,959	+				-0.3
5,175,959	+				-1.4
5,175,959	+				-1.1
5,175,959	+				-0.4
5,175,959	+				-2.3
5,175,959	+				+0.7
5,175,959	+				-1.1
5,175,959	+				-0.1
5,175,967	-				+0.2
5,175,967	-				+0.2
5,175,967	-				-0.6
5,175,967	-				+0.0
5,175,967	-				-0.1
5,175,967	-				-0.8
5,175,967	-				-1.1
5,175,996	+		GFF5182	0.17	+1.1
5,176,009	+		GFF5182	0.20	-0.1
5,176,088	+		GFF5182	0.39	-0.0
5,176,089	+		GFF5182	0.40	-1.9
5,176,089	+		GFF5182	0.40	-0.5
5,176,097	-		GFF5182	0.42	-0.9
5,176,099	+		GFF5182	0.42	+0.2
5,176,108	+		GFF5182	0.44	+0.3
5,176,118	+		GFF5182	0.47	-0.9
5,176,124	+		GFF5182	0.48	-1.1
5,176,124	+		GFF5182	0.48	-1.2
5,176,124	+		GFF5182	0.48	-0.6
5,176,124	+		GFF5182	0.48	+1.0
5,176,124	+		GFF5182	0.48	-1.0
5,176,124	+		GFF5182	0.48	+0.2
5,176,124	+		GFF5182	0.48	+0.3
5,176,124	+		GFF5182	0.48	-1.4
5,176,124	+		GFF5182	0.48	-0.6
5,176,124	+		GFF5182	0.48	-1.3
5,176,124	+		GFF5182	0.48	-1.6
5,176,124	+		GFF5182	0.48	-0.2
5,176,124	+		GFF5182	0.48	-1.3
5,176,124	+		GFF5182	0.48	-0.1
5,176,124	+		GFF5182	0.48	+0.3
5,176,124	+		GFF5182	0.48	+0.5
5,176,129	+		GFF5182	0.50	-1.2
5,176,132	-		GFF5182	0.50	+0.1
5,176,132	-		GFF5182	0.50	-1.4
5,176,132	-		GFF5182	0.50	-1.8
5,176,132	-		GFF5182	0.50	-1.5
5,176,132	-		GFF5182	0.50	-1.2
5,176,132	-		GFF5182	0.50	-1.8
5,176,132	-		GFF5182	0.50	+0.1
5,176,132	-		GFF5182	0.50	-0.9
5,176,132	-		GFF5182	0.50	-0.7
5,176,132	-		GFF5182	0.50	-1.9
5,176,132	-		GFF5182	0.50	-0.6
5,176,132	-		GFF5182	0.50	-1.0
5,176,132	-		GFF5182	0.50	-2.5
5,176,132	-		GFF5182	0.50	+0.3
5,176,132	-		GFF5182	0.50	-2.0
5,176,132	-		GFF5182	0.50	-1.8
5,176,132	-		GFF5182	0.50	-0.9
5,176,132	-		GFF5182	0.50	-2.5
5,176,132	-		GFF5182	0.50	-1.3
5,176,132	-		GFF5182	0.50	-1.3
5,176,132	-		GFF5182	0.50	-1.0
5,176,132	-		GFF5182	0.50	+0.6
5,176,132	-		GFF5182	0.50	-2.6
5,176,132	-		GFF5182	0.50	-1.9
5,176,132	-		GFF5182	0.50	+0.2
5,176,137	-		GFF5182	0.51	+0.4
5,176,137	-		GFF5182	0.51	-1.1
5,176,137	-		GFF5182	0.51	-1.8
5,176,139	+		GFF5182	0.52	-0.3
5,176,139	+		GFF5182	0.52	-0.7
5,176,139	+		GFF5182	0.52	-1.5
5,176,140	-		GFF5182	0.52	-0.3
5,176,144	+		GFF5182	0.53	+1.0
5,176,147	-		GFF5182	0.54	-0.1
5,176,147	-		GFF5182	0.54	-1.0
5,176,147	-		GFF5182	0.54	-1.7
5,176,147	-		GFF5182	0.54	+0.1
5,176,147	-		GFF5182	0.54	+1.6
5,176,152	-		GFF5182	0.55	-0.9
5,176,152	-		GFF5182	0.55	-2.2
5,176,152	-		GFF5182	0.55	-2.4
5,176,154	+		GFF5182	0.56	-1.3
5,176,154	+		GFF5182	0.56	-0.5
5,176,157	-		GFF5182	0.56	+0.3
5,176,157	-		GFF5182	0.56	-0.1
5,176,159	+		GFF5182	0.57	-2.4
5,176,162	-		GFF5182	0.58	-1.7
5,176,162	-		GFF5182	0.58	+0.5
5,176,162	-		GFF5182	0.58	-0.6
5,176,167	-		GFF5182	0.59	+0.3
5,176,167	-		GFF5182	0.59	-0.2
5,176,167	-		GFF5182	0.59	-1.2
5,176,168	+		GFF5182	0.59	-0.7
5,176,168	+		GFF5182	0.59	-0.5
5,176,176	-		GFF5182	0.61	-1.6
5,176,176	-		GFF5182	0.61	-1.6
5,176,176	-		GFF5182	0.61	-2.3
5,176,178	+		GFF5182	0.62	-1.4
5,176,186	+		GFF5182	0.63	-0.2
5,176,187	-		GFF5182	0.64	-0.8
5,176,194	-		GFF5182	0.65	-0.1
5,176,232	+		GFF5182	0.75	+0.4
5,176,247	+		GFF5182	0.78	+0.1
5,176,274	+		GFF5182	0.85	-0.8
5,176,274	+		GFF5182	0.85	-0.6
5,176,282	-		GFF5182	0.87	-1.8
5,176,282	-		GFF5182	0.87	-0.3
5,176,282	-		GFF5182	0.87	-1.6
5,176,309	-				-1.2
5,176,352	-				-2.1
5,176,733	+				-0.7
5,176,760	+				-0.8
5,176,791	-		GFF5184	0.19	-1.1
5,176,793	+		GFF5184	0.20	-0.5
5,176,816	+		GFF5184	0.29	+0.5
5,176,816	+		GFF5184	0.29	-1.3
5,176,816	+		GFF5184	0.29	-1.3
5,176,816	+		GFF5184	0.29	-1.7
5,176,816	+		GFF5184	0.29	-1.1
5,176,816	+		GFF5184	0.29	+1.5
5,176,816	+		GFF5184	0.29	-1.3
5,176,816	+		GFF5184	0.29	+1.3
5,176,816	+		GFF5184	0.29	-1.1
5,176,816	+		GFF5184	0.29	+0.2
5,176,816	+		GFF5184	0.29	+0.7
5,176,816	+		GFF5184	0.29	-1.0
5,176,816	+		GFF5184	0.29	+0.0
5,176,824	-		GFF5184	0.33	-1.0
5,176,824	-		GFF5184	0.33	+0.4
5,176,824	-		GFF5184	0.33	-1.2
5,176,824	-		GFF5184	0.33	-0.1
5,176,824	-		GFF5184	0.33	+0.4
5,176,824	-		GFF5184	0.33	-0.1
5,176,824	-		GFF5184	0.33	-1.1
5,176,824	-		GFF5184	0.33	+0.3
5,176,824	-		GFF5184	0.33	+1.3
5,176,824	-		GFF5184	0.33	+0.6
5,176,824	-		GFF5184	0.33	+0.4
5,176,824	-		GFF5184	0.33	-1.6
5,176,843	+		GFF5184	0.40	+0.2
5,176,851	+		GFF5184	0.43	+0.2
5,176,851	-		GFF5184	0.43	-1.3
5,176,872	-		GFF5184	0.52	-0.8