Strain Fitness in Sphingobium sp. HT1-2 around GFF5144

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,136,849	+		GFF5142	0.84	-0.1
5,136,849	+		GFF5142	0.84	-1.0
5,136,849	+		GFF5142	0.84	-1.9
5,136,852	-		GFF5142	0.85	+0.1
5,136,862	+		GFF5142	0.86	-1.4
5,136,862	+		GFF5142	0.86	-0.1
5,136,862	+		GFF5142	0.86	-2.4
5,136,862	+		GFF5142	0.86	+0.2
5,136,868	+		GFF5142	0.86	+0.3
5,136,869	+		GFF5142	0.86	-0.1
5,136,869	+		GFF5142	0.86	-1.9
5,136,870	-		GFF5142	0.86	-0.9
5,136,870	-		GFF5142	0.86	-1.4
5,136,899	+		GFF5142	0.89	+0.5
5,136,917	-				-3.2
5,136,936	+				-1.4
5,136,941	+				+0.3
5,136,995	-				-0.8
5,136,995	-				-0.3
5,137,013	+				-0.3
5,137,021	-				+0.3
5,137,036	-				-1.9
5,137,060	+		GFF5143	0.12	+0.3
5,137,070	+		GFF5143	0.14	-0.7
5,137,097	+		GFF5143	0.19	+0.9
5,137,134	+		GFF5143	0.27	-0.2
5,137,136	+		GFF5143	0.27	+0.3
5,137,141	-		GFF5143	0.28	-0.2
5,137,141	-		GFF5143	0.28	+0.9
5,137,164	-		GFF5143	0.33	+0.5
5,137,194	+		GFF5143	0.39	+0.0
5,137,196	+		GFF5143	0.39	-0.8
5,137,202	+		GFF5143	0.40	-2.7
5,137,210	-		GFF5143	0.42	-1.4
5,137,210	-		GFF5143	0.42	-1.1
5,137,210	-		GFF5143	0.42	-0.1
5,137,210	-		GFF5143	0.42	-0.5
5,137,230	+		GFF5143	0.46	-0.7
5,137,243	-		GFF5143	0.48	-2.0
5,137,247	+		GFF5143	0.49	-0.9
5,137,255	-		GFF5143	0.51	+0.3
5,137,265	-		GFF5143	0.53	-0.5
5,137,270	-		GFF5143	0.54	-1.1
5,137,275	+		GFF5143	0.55	-2.1
5,137,275	+		GFF5143	0.55	-2.4
5,137,275	+		GFF5143	0.55	-1.0
5,137,275	+		GFF5143	0.55	-1.6
5,137,275	+		GFF5143	0.55	-1.1
5,137,275	+		GFF5143	0.55	-1.3
5,137,283	-		GFF5143	0.56	-0.0
5,137,283	-		GFF5143	0.56	-0.5
5,137,283	-		GFF5143	0.56	-1.1
5,137,283	-		GFF5143	0.56	-1.5
5,137,283	-		GFF5143	0.56	-1.6
5,137,290	-		GFF5143	0.58	-1.0
5,137,299	-		GFF5143	0.60	+0.1
5,137,307	-		GFF5143	0.61	+0.4
5,137,308	+		GFF5143	0.61	-0.1
5,137,314	-		GFF5143	0.62	+2.1
5,137,330	+		GFF5143	0.66	-0.1
5,137,330	+		GFF5143	0.66	-0.8
5,137,330	+		GFF5143	0.66	-0.0
5,137,330	+		GFF5143	0.66	-0.7
5,137,330	+		GFF5143	0.66	-0.0
5,137,343	-		GFF5143	0.68	+0.1
5,137,344	-		GFF5143	0.68	-1.7
5,137,349	-		GFF5143	0.69	-1.5
5,137,349	-		GFF5143	0.69	-1.7
5,137,359	-		GFF5143	0.71	+0.7
5,137,361	+		GFF5143	0.72	-1.4
5,137,366	+		GFF5143	0.73	-0.7
5,137,373	+		GFF5143	0.74	+1.1
5,137,381	-		GFF5143	0.76	-1.1
5,137,395	+		GFF5143	0.79	-0.0
5,137,416	+		GFF5143	0.83	-1.5
5,137,418	-		GFF5143	0.83	-0.9
5,137,418	-		GFF5143	0.83	-1.1
5,137,460	+				+0.5
5,137,460	+				-1.0
5,137,460	+				+1.6
5,137,468	-				-0.9
5,137,468	-				-0.8
5,137,468	-				-1.7
5,137,468	-				+0.5
5,137,476	-				-2.1
5,137,511	+				-0.9
5,137,549	+				+0.3
5,137,623	+				-1.6
5,137,623	+				-0.9
5,137,631	-				+0.3
5,137,675	-				-1.1
5,137,727	-				-1.9
5,137,762	-				-1.1
5,137,785	+				-1.0
5,137,798	-				-0.5
5,137,811	+				+0.5
5,137,840	-				-1.7
5,137,840	-				-1.2
5,137,845	+				-1.7
5,137,849	+				-1.0
5,137,849	+				-1.2
5,137,853	-				-1.8
5,137,855	+				-1.0
5,137,855	-				+0.2
5,137,859	+				+0.9
5,137,863	-				+0.8
5,137,863	-				-0.8
5,137,863	-				-0.7
5,137,867	-				-1.5
5,137,867	-				+1.7
5,137,877	+				-1.5
5,137,877	+				+1.2
5,137,885	-				+0.9
5,137,894	-				+0.1
5,137,896	+				+0.7
5,137,901	+				-2.5
5,137,904	-				-0.5
5,137,911	-				-1.8
5,137,911	-				-1.0
5,137,949	+		GFF5144	0.12	-1.5
5,137,959	+		GFF5144	0.13	-1.2
5,137,960	+		GFF5144	0.13	-1.5
5,137,965	+		GFF5144	0.14	+0.1
5,137,972	-		GFF5144	0.15	-0.6
5,137,977	+		GFF5144	0.16	+0.8
5,138,002	+		GFF5144	0.19	-0.5
5,138,008	-		GFF5144	0.19	+0.7
5,138,010	-		GFF5144	0.19	-0.9
5,138,012	+		GFF5144	0.20	-0.9
5,138,012	+		GFF5144	0.20	+0.6
5,138,012	+		GFF5144	0.20	-1.1
5,138,020	-		GFF5144	0.21	-0.5
5,138,023	+		GFF5144	0.21	-1.3
5,138,086	+		GFF5144	0.29	-0.8
5,138,103	+		GFF5144	0.31	-0.3
5,138,111	-		GFF5144	0.32	+0.3
5,138,111	-		GFF5144	0.32	+0.1
5,138,152	-		GFF5144	0.37	-0.7
5,138,162	-		GFF5144	0.38	+1.6
5,138,165	+		GFF5144	0.38	+0.4
5,138,212	+		GFF5144	0.44	-0.3
5,138,212	+		GFF5144	0.44	+0.9
5,138,212	+		GFF5144	0.44	-1.5
5,138,212	+		GFF5144	0.44	+1.0
5,138,212	+		GFF5144	0.44	-0.2
5,138,212	+		GFF5144	0.44	+0.6
5,138,212	+		GFF5144	0.44	-1.5
5,138,217	+		GFF5144	0.44	+0.2
5,138,220	-		GFF5144	0.45	+1.3
5,138,220	-		GFF5144	0.45	-1.2
5,138,220	-		GFF5144	0.45	-1.4
5,138,227	+		GFF5144	0.46	-2.8
5,138,230	-		GFF5144	0.46	+1.0
5,138,240	-		GFF5144	0.47	-1.1
5,138,248	+		GFF5144	0.48	-0.7
5,138,286	-		GFF5144	0.53	+0.3
5,138,299	+		GFF5144	0.54	-0.4
5,138,299	+		GFF5144	0.54	-1.0
5,138,307	-		GFF5144	0.55	+1.4
5,138,322	-		GFF5144	0.57	-1.7
5,138,343	+		GFF5144	0.60	-1.1
5,138,343	+		GFF5144	0.60	-1.0
5,138,343	+		GFF5144	0.60	+0.5
5,138,343	+		GFF5144	0.60	-1.3
5,138,343	+		GFF5144	0.60	-0.4
5,138,343	+		GFF5144	0.60	-0.7
5,138,343	+		GFF5144	0.60	+2.0
5,138,372	+		GFF5144	0.63	-0.8
5,138,378	+		GFF5144	0.64	+0.6
5,138,381	-		GFF5144	0.64	-0.9
5,138,383	+		GFF5144	0.64	+0.7
5,138,383	+		GFF5144	0.64	-1.5
5,138,383	+		GFF5144	0.64	+0.4
5,138,419	+		GFF5144	0.69	+1.6
5,138,427	-		GFF5144	0.70	+0.1
5,138,429	+		GFF5144	0.70	+0.2
5,138,429	+		GFF5144	0.70	+1.7
5,138,429	+		GFF5144	0.70	+0.3
5,138,429	+		GFF5144	0.70	-0.4
5,138,429	+		GFF5144	0.70	+1.0
5,138,429	+		GFF5144	0.70	+0.1
5,138,429	+		GFF5144	0.70	-1.0
5,138,429	+		GFF5144	0.70	-1.9
5,138,436	+		GFF5144	0.71	-0.2
5,138,436	+		GFF5144	0.71	-1.6
5,138,437	-		GFF5144	0.71	-0.4
5,138,437	-		GFF5144	0.71	+1.4
5,138,441	+		GFF5144	0.71	-0.9
5,138,476	+		GFF5144	0.76	+1.3
5,138,476	+		GFF5144	0.76	-2.8
5,138,486	+		GFF5144	0.77	-1.1
5,138,486	+		GFF5144	0.77	-1.0
5,138,486	+		GFF5144	0.77	+0.1
5,138,486	+		GFF5144	0.77	-1.0
5,138,486	+		GFF5144	0.77	-1.1
5,138,486	+		GFF5144	0.77	-0.0
5,138,486	+		GFF5144	0.77	+0.7
5,138,486	+		GFF5144	0.77	-0.3
5,138,486	+		GFF5144	0.77	-0.8
5,138,486	+		GFF5144	0.77	-0.5
5,138,486	+		GFF5144	0.77	-0.4
5,138,486	+		GFF5144	0.77	-1.6
5,138,486	+		GFF5144	0.77	-1.5
5,138,486	+		GFF5144	0.77	-1.4
5,138,486	+		GFF5144	0.77	+0.7
5,138,486	+		GFF5144	0.77	+0.8
5,138,486	+		GFF5144	0.77	-0.4
5,138,486	+		GFF5144	0.77	-0.6
5,138,486	+		GFF5144	0.77	-1.3
5,138,486	+		GFF5144	0.77	-1.6
5,138,486	+		GFF5144	0.77	-0.6
5,138,486	+		GFF5144	0.77	-2.0
5,138,486	+		GFF5144	0.77	+1.3
5,138,486	+		GFF5144	0.77	+0.3
5,138,486	+		GFF5144	0.77	-0.5
5,138,494	-		GFF5144	0.78	+0.1
5,138,494	-		GFF5144	0.78	-0.2
5,138,494	-		GFF5144	0.78	-1.3
5,138,494	-		GFF5144	0.78	+0.2
5,138,494	-		GFF5144	0.78	-0.9
5,138,494	-		GFF5144	0.78	-0.7
5,138,494	-		GFF5144	0.78	-1.0
5,138,494	-		GFF5144	0.78	+1.4
5,138,494	-		GFF5144	0.78	-2.3
5,138,494	-		GFF5144	0.78	-1.5
5,138,494	-		GFF5144	0.78	-0.7
5,138,494	-		GFF5144	0.78	-1.5
5,138,494	-		GFF5144	0.78	-0.8
5,138,494	-		GFF5144	0.78	-0.5
5,138,494	-		GFF5144	0.78	+0.4
5,138,494	-		GFF5144	0.78	-0.9
5,138,494	-		GFF5144	0.78	-0.4
5,138,495	+		GFF5144	0.78	-2.3
5,138,509	+		GFF5144	0.80	-1.5
5,138,509	+		GFF5144	0.80	-2.5
5,138,514	+		GFF5144	0.80	+0.0
5,138,517	-		GFF5144	0.81	-0.0
5,138,519	+		GFF5144	0.81	+0.6
5,138,519	+		GFF5144	0.81	-1.7
5,138,519	+		GFF5144	0.81	-1.0
5,138,519	+		GFF5144	0.81	-0.7
5,138,522	-		GFF5144	0.81	+0.2
5,138,524	-		GFF5144	0.81	+0.8
5,138,530	+		GFF5144	0.82	-0.7
5,138,534	-		GFF5144	0.83	-0.5
5,138,540	+		GFF5144	0.83	-0.5
5,138,545	+		GFF5144	0.84	-0.8
5,138,553	-		GFF5144	0.85	-1.3
5,138,570	-		GFF5144	0.87	-0.9
5,138,586	-		GFF5144	0.89	-0.6
5,138,595	+		GFF5144	0.90	+0.1
5,138,620	+				-1.0
5,138,630	+				-0.2
5,138,637	+				+0.5
5,138,642	+				+0.6
5,138,650	-				-0.9
5,138,650	-				-0.9
5,138,659	+				-0.5
5,138,662	-				-0.1
5,138,667	-				-0.2
5,138,667	-				-1.5
5,138,669	+				-1.7
5,138,677	-				+0.3
5,138,704	+				-0.7
5,138,726	-				-0.7
5,138,730	+				+0.3
5,138,730	+				-0.3
5,138,736	-				-0.7
5,138,736	-				+1.3
5,138,738	-				-1.1
5,138,738	-				-1.5
5,138,738	-				-1.8
5,138,753	-				-1.7
5,138,780	+				-1.9
5,138,781	+				-1.1
5,138,822	-				-0.4
5,138,839	+				+0.2
5,138,839	+				-0.7
5,138,847	-				-0.7
5,138,850	+				-0.1
5,138,850	+				-1.9
5,138,858	-				-2.5
5,138,858	-				+0.3
5,138,863	-				-0.9
5,138,865	+				-0.7
5,138,869	+				+1.2
5,138,869	+				-0.7
5,138,873	-				+0.0
5,138,873	-				-0.7
5,138,873	-				-0.9
5,138,873	-				-0.1
5,138,873	-				-1.6
5,138,874	+				+0.9
5,138,894	-				-0.7
5,138,921	+				+0.8
5,138,929	-				-1.7
5,138,979	+		GFF5145	0.18	-0.5
5,138,979	+		GFF5145	0.18	+0.9
5,138,979	+		GFF5145	0.18	-2.2
5,139,024	+		GFF5145	0.30	-1.1
5,139,039	+		GFF5145	0.33	-0.1
5,139,039	+		GFF5145	0.33	-1.4
5,139,039	+		GFF5145	0.33	-0.0
5,139,047	-		GFF5145	0.35	-0.7
5,139,047	-		GFF5145	0.35	-0.7
5,139,102	-		GFF5145	0.49	+0.7
5,139,111	+		GFF5145	0.51	+1.4
5,139,111	+		GFF5145	0.51	-0.9
5,139,111	+		GFF5145	0.51	-0.4
5,139,111	+		GFF5145	0.51	+1.1
5,139,111	+		GFF5145	0.51	-0.5
5,139,111	+		GFF5145	0.51	+1.6
5,139,111	+		GFF5145	0.51	-1.0
5,139,111	+		GFF5145	0.51	-0.8
5,139,111	+		GFF5145	0.51	+0.6
5,139,117	-		GFF5145	0.53	-1.5
5,139,119	-		GFF5145	0.53	+0.1
5,139,119	-		GFF5145	0.53	-1.3
5,139,119	-		GFF5145	0.53	+1.5
5,139,119	-		GFF5145	0.53	-0.2
5,139,119	-		GFF5145	0.53	-0.3
5,139,119	-		GFF5145	0.53	-0.1
5,139,121	+		GFF5145	0.54	+0.5
5,139,126	+		GFF5145	0.55	+0.9
5,139,131	+		GFF5145	0.56	-0.7
5,139,161	+		GFF5145	0.64	-1.4
5,139,166	+		GFF5145	0.65	-0.8
5,139,180	+		GFF5145	0.68	+0.3
5,139,182	+		GFF5145	0.69	-0.9
5,139,182	+		GFF5145	0.69	-0.7
5,139,182	+		GFF5145	0.69	-0.7
5,139,189	-		GFF5145	0.71	-0.8
5,139,194	-		GFF5145	0.72	-1.5
5,139,203	+		GFF5145	0.74	-0.4
5,139,207	+		GFF5145	0.75	-0.7
5,139,211	-		GFF5145	0.76	-0.8
5,139,215	-		GFF5145	0.77	-0.8
5,139,217	+		GFF5145	0.78	+1.6
5,139,217	+		GFF5145	0.78	-2.4
5,139,217	+		GFF5145	0.78	-1.2
5,139,217	+		GFF5145	0.78	-0.4
5,139,217	+		GFF5145	0.78	-1.0
5,139,217	+		GFF5145	0.78	+1.3
5,139,225	-		GFF5145	0.80	-0.6
5,139,225	-		GFF5145	0.80	-1.0
5,139,225	-		GFF5145	0.80	+0.3
5,139,225	-		GFF5145	0.80	-0.1
5,139,225	-		GFF5145	0.80	-2.2
5,139,225	-		GFF5145	0.80	-1.4
5,139,225	-		GFF5145	0.80	+1.2
5,139,230	-		GFF5145	0.81	+0.5
5,139,249	+		GFF5145	0.86	-2.1
5,139,249	+		GFF5145	0.86	+1.6
5,139,249	+		GFF5145	0.86	-0.7
5,139,249	+		GFF5145	0.86	-0.8
5,139,249	+		GFF5145	0.86	-0.8
5,139,249	+		GFF5145	0.86	-0.8
5,139,257	-		GFF5145	0.88	-0.9
5,139,280	+				-1.1
5,139,284	-				-1.8
5,139,304	-				-0.9
5,139,306	-				-0.0
5,139,339	+				-0.8
5,139,364	-				-0.2
5,139,365	-				-2.5
5,139,413	+				-0.4
5,139,418	+				+0.8
5,139,418	+				+0.1
5,139,421	-				+0.3
5,139,421	-				+0.1
5,139,421	-				-0.2
5,139,423	+				-0.7
5,139,423	+				-1.4
5,139,426	-				-1.5
5,139,426	-				-2.5
5,139,438	-				-0.5
5,139,450	-				-1.3
5,139,451	-				-0.5
5,139,479	+				-0.6
5,139,490	+				-1.5
5,139,498	+				-1.3
5,139,504	+				+0.7
5,139,528	+				-0.9
5,139,552	-				-1.1
5,139,563	+				+0.4
5,139,582	-		GFF5146	0.10	-0.8
5,139,599	+		GFF5146	0.13	+0.3
5,139,599	+		GFF5146	0.13	-1.3
5,139,607	-		GFF5146	0.14	-1.1
5,139,607	-		GFF5146	0.14	+0.2
5,139,645	+		GFF5146	0.19	+0.3
5,139,656	+		GFF5146	0.20	+0.7
5,139,656	+		GFF5146	0.20	-1.8
5,139,656	+		GFF5146	0.20	-0.7
5,139,656	+		GFF5146	0.20	-0.8
5,139,656	+		GFF5146	0.20	+0.2
5,139,656	+		GFF5146	0.20	+0.7
5,139,656	+		GFF5146	0.20	-1.4
5,139,664	-		GFF5146	0.21	-0.5
5,139,664	-		GFF5146	0.21	+0.2
5,139,675	-		GFF5146	0.23	-1.4
5,139,677	+		GFF5146	0.23	-1.5