Strain Fitness in Sphingobium sp. HT1-2 around GFF5103

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,089,751	+		GFF5101	0.25	+0.5
5,089,759	-		GFF5101	0.26	-1.4
5,089,771	-		GFF5101	0.29	-0.5
5,089,781	+		GFF5101	0.31	-1.2
5,089,823	+		GFF5101	0.39	-0.5
5,089,831	-		GFF5101	0.41	-1.3
5,089,839	-		GFF5101	0.42	-1.8
5,089,888	+		GFF5101	0.52	+0.8
5,089,888	+		GFF5101	0.52	-0.2
5,089,893	+		GFF5101	0.53	+0.8
5,089,896	-		GFF5101	0.53	-0.1
5,089,896	-		GFF5101	0.53	-1.3
5,089,898	+		GFF5101	0.54	-0.2
5,089,898	+		GFF5101	0.54	-0.4
5,089,907	-		GFF5101	0.56	-1.3
5,089,907	-		GFF5101	0.56	-1.1
5,089,925	-		GFF5101	0.59	-1.0
5,089,929	+		GFF5101	0.60	+1.2
5,089,946	-		GFF5101	0.63	+0.1
5,089,960	+		GFF5101	0.66	-1.4
5,089,960	+		GFF5101	0.66	-0.8
5,089,960	+		GFF5101	0.66	-0.6
5,089,980	-		GFF5101	0.70	-1.5
5,089,980	-		GFF5101	0.70	-2.6
5,090,009	-		GFF5101	0.76	-1.2
5,090,014	+		GFF5101	0.77	-2.8
5,090,014	+		GFF5101	0.77	-0.6
5,090,016	+		GFF5101	0.77	-1.9
5,090,022	-		GFF5101	0.79	-0.8
5,090,077	-		GFF5101	0.90	-0.7
5,090,084	+				-0.5
5,090,087	-				-1.8
5,090,091	+				-1.8
5,090,091	+				+0.0
5,090,091	+				-2.2
5,090,091	+				-1.7
5,090,091	+				-2.4
5,090,091	+				+0.0
5,090,091	+				-1.4
5,090,091	+				-1.3
5,090,091	+				-1.0
5,090,091	+				-1.5
5,090,091	+				-0.5
5,090,091	+				-1.5
5,090,091	+				-1.1
5,090,099	-				-2.4
5,090,099	-				-0.8
5,090,099	-				-1.4
5,090,099	-				-0.1
5,090,099	-				-0.5
5,090,099	-				-1.5
5,090,099	-				-1.4
5,090,099	-				-0.5
5,090,099	-				-3.7
5,090,099	-				-0.4
5,090,099	-				-2.3
5,090,099	-				-3.0
5,090,099	-				-1.8
5,090,099	-				-1.4
5,090,109	-				-2.9
5,090,113	+				-1.8
5,090,113	+				-2.1
5,090,113	+				-0.8
5,090,113	+				-1.5
5,090,113	+				-1.6
5,090,113	+				-2.7
5,090,113	+				-1.4
5,090,113	+				-0.2
5,090,113	+				-1.3
5,090,113	+				-1.2
5,090,113	+				-0.2
5,090,121	-				+0.5
5,090,121	-				-2.1
5,090,121	-				-2.5
5,090,121	-				-0.8
5,090,121	-				-2.1
5,090,121	-				-0.4
5,090,135	+				-3.0
5,090,135	+				-2.0
5,090,135	+				-0.8
5,090,138	-				-1.4
5,090,143	-				-1.1
5,090,143	-				-0.7
5,090,143	-				-1.7
5,090,143	-				-1.7
5,090,143	-				-1.2
5,090,148	+				+0.2
5,090,148	-				-1.2
5,090,153	+				-1.5
5,090,163	+				+0.3
5,090,168	+				-0.9
5,090,168	+				-1.0
5,090,171	-				+0.7
5,090,176	-				-0.4
5,090,194	-		GFF5102	0.12	-0.8
5,090,200	-		GFF5102	0.13	-1.9
5,090,200	-		GFF5102	0.13	-1.6
5,090,208	-		GFF5102	0.14	+1.1
5,090,223	-		GFF5102	0.16	-2.3
5,090,224	+		GFF5102	0.17	-2.4
5,090,227	+		GFF5102	0.17	-1.1
5,090,232	-		GFF5102	0.18	+1.0
5,090,234	-		GFF5102	0.18	-1.7
5,090,238	+		GFF5102	0.19	-1.1
5,090,258	+		GFF5102	0.22	+0.5
5,090,263	+		GFF5102	0.23	-0.5
5,090,263	+		GFF5102	0.23	-1.8
5,090,271	-		GFF5102	0.25	-2.5
5,090,272	-		GFF5102	0.25	-0.5
5,090,272	-		GFF5102	0.25	-1.7
5,090,299	+		GFF5102	0.29	-1.9
5,090,303	-		GFF5102	0.30	-2.3
5,090,310	+		GFF5102	0.31	-0.4
5,090,318	-		GFF5102	0.32	-1.6
5,090,318	-		GFF5102	0.32	-0.2
5,090,318	-		GFF5102	0.32	-2.5
5,090,320	+		GFF5102	0.33	-2.8
5,090,355	+		GFF5102	0.39	-1.8
5,090,355	+		GFF5102	0.39	-1.7
5,090,358	-		GFF5102	0.39	-1.3
5,090,360	+		GFF5102	0.40	-1.4
5,090,362	-		GFF5102	0.40	-1.4
5,090,363	-		GFF5102	0.40	-0.6
5,090,368	-		GFF5102	0.41	+0.2
5,090,368	-		GFF5102	0.41	-2.2
5,090,370	+		GFF5102	0.41	-2.3
5,090,370	+		GFF5102	0.41	-2.1
5,090,370	+		GFF5102	0.41	-0.9
5,090,373	-		GFF5102	0.42	-1.0
5,090,378	-		GFF5102	0.43	-2.4
5,090,378	-		GFF5102	0.43	-1.8
5,090,378	-		GFF5102	0.43	-1.9
5,090,380	+		GFF5102	0.43	-2.1
5,090,384	-		GFF5102	0.44	-1.9
5,090,388	+		GFF5102	0.44	-2.5
5,090,388	+		GFF5102	0.44	-1.6
5,090,388	+		GFF5102	0.44	+0.7
5,090,388	+		GFF5102	0.44	-1.5
5,090,388	+		GFF5102	0.44	-1.4
5,090,388	+		GFF5102	0.44	-0.3
5,090,388	+		GFF5102	0.44	-1.3
5,090,396	-		GFF5102	0.46	-1.3
5,090,396	-		GFF5102	0.46	-0.2
5,090,396	-		GFF5102	0.46	-1.0
5,090,396	-		GFF5102	0.46	-0.4
5,090,396	-		GFF5102	0.46	-2.0
5,090,396	-		GFF5102	0.46	+0.6
5,090,407	+		GFF5102	0.47	-0.4
5,090,407	+		GFF5102	0.47	+0.5
5,090,407	+		GFF5102	0.47	-2.6
5,090,407	+		GFF5102	0.47	+0.6
5,090,415	-		GFF5102	0.49	-1.7
5,090,415	-		GFF5102	0.49	-0.5
5,090,415	-		GFF5102	0.49	-0.9
5,090,415	-		GFF5102	0.49	-0.8
5,090,428	+		GFF5102	0.51	-0.3
5,090,434	-		GFF5102	0.52	-1.5
5,090,434	-		GFF5102	0.52	-1.8
5,090,445	+		GFF5102	0.54	-0.5
5,090,475	+		GFF5102	0.59	-2.2
5,090,476	-		GFF5102	0.59	+0.2
5,090,477	+		GFF5102	0.59	-1.9
5,090,480	+		GFF5102	0.60	-3.0
5,090,480	+		GFF5102	0.60	-2.0
5,090,480	+		GFF5102	0.60	-2.2
5,090,506	-		GFF5102	0.64	-0.0
5,090,511	-		GFF5102	0.65	+0.0
5,090,515	-		GFF5102	0.66	-1.7
5,090,516	+		GFF5102	0.66	-1.3
5,090,518	+		GFF5102	0.66	-0.3
5,090,518	+		GFF5102	0.66	-0.3
5,090,518	+		GFF5102	0.66	-1.3
5,090,518	+		GFF5102	0.66	+0.2
5,090,518	+		GFF5102	0.66	-1.1
5,090,523	+		GFF5102	0.67	+0.1
5,090,523	+		GFF5102	0.67	-2.4
5,090,524	-		GFF5102	0.67	-0.4
5,090,524	-		GFF5102	0.67	-2.2
5,090,524	-		GFF5102	0.67	-1.2
5,090,524	-		GFF5102	0.67	+0.0
5,090,524	-		GFF5102	0.67	-2.1
5,090,524	-		GFF5102	0.67	+0.2
5,090,526	-		GFF5102	0.68	-0.1
5,090,526	-		GFF5102	0.68	+0.5
5,090,526	-		GFF5102	0.68	-0.8
5,090,526	-		GFF5102	0.68	-1.4
5,090,526	-		GFF5102	0.68	-2.1
5,090,526	-		GFF5102	0.68	-1.5
5,090,528	+		GFF5102	0.68	-2.2
5,090,534	-		GFF5102	0.69	-1.3
5,090,536	+		GFF5102	0.69	-1.8
5,090,536	+		GFF5102	0.69	-0.3
5,090,536	+		GFF5102	0.69	-0.0
5,090,536	+		GFF5102	0.69	-2.5
5,090,536	+		GFF5102	0.69	-1.9
5,090,536	+		GFF5102	0.69	-0.9
5,090,536	+		GFF5102	0.69	+0.1
5,090,536	+		GFF5102	0.69	-1.1
5,090,536	+		GFF5102	0.69	-0.9
5,090,544	-		GFF5102	0.71	-1.5
5,090,544	-		GFF5102	0.71	-1.5
5,090,544	-		GFF5102	0.71	-0.8
5,090,544	-		GFF5102	0.71	-0.9
5,090,544	-		GFF5102	0.71	-1.0
5,090,544	-		GFF5102	0.71	-1.7
5,090,544	-		GFF5102	0.71	+0.2
5,090,549	-		GFF5102	0.71	-0.3
5,090,549	-		GFF5102	0.71	-1.6
5,090,556	+		GFF5102	0.73	-1.4
5,090,563	-		GFF5102	0.74	+0.3
5,090,634	+		GFF5102	0.86	-2.1
5,090,636	-		GFF5102	0.86	+0.6
5,090,650	+		GFF5102	0.88	-1.0
5,090,653	-		GFF5102	0.89	-0.4
5,090,655	+		GFF5102	0.89	-1.1
5,090,655	+		GFF5102	0.89	+0.8
5,090,660	+				-0.5
5,090,660	+				+0.5
5,090,660	+				-2.1
5,090,666	+				-1.9
5,090,668	-				-2.3
5,090,668	-				-1.0
5,090,668	-				-2.5
5,090,706	+				-1.6
5,090,713	+				-0.6
5,090,721	-				-0.7
5,090,758	+				-1.7
5,090,766	-				-0.6
5,090,766	-				-0.6
5,090,766	-				-1.0
5,090,766	-				-2.2
5,090,766	-				-3.1
5,090,769	+				+1.4
5,090,771	+				-0.8
5,090,807	+				-0.6
5,090,808	+		GFF5103	0.10	-0.9
5,090,815	-		GFF5103	0.11	+0.1
5,090,815	-		GFF5103	0.11	-1.0
5,090,822	-		GFF5103	0.12	-0.8
5,090,822	-		GFF5103	0.12	+0.3
5,090,826	-		GFF5103	0.13	-1.1
5,090,826	-		GFF5103	0.13	-0.7
5,090,830	+		GFF5103	0.14	-0.8
5,090,833	-		GFF5103	0.14	-0.4
5,090,833	-		GFF5103	0.14	-0.1
5,090,837	+		GFF5103	0.15	-1.5
5,090,837	+		GFF5103	0.15	-1.6
5,090,839	+		GFF5103	0.15	-1.9
5,090,847	-		GFF5103	0.17	-3.0
5,090,847	-		GFF5103	0.17	-1.0
5,090,847	-		GFF5103	0.17	-0.6
5,090,886	+		GFF5103	0.24	-1.2
5,090,895	+		GFF5103	0.25	-1.4
5,090,900	+		GFF5103	0.26	-0.8
5,090,903	-		GFF5103	0.27	-0.0
5,090,903	-		GFF5103	0.27	-1.2
5,090,923	+		GFF5103	0.30	-0.7
5,090,941	+		GFF5103	0.33	-0.3
5,090,944	+		GFF5103	0.34	-2.8
5,090,946	+		GFF5103	0.34	-0.3
5,090,946	+		GFF5103	0.34	+0.2
5,090,946	+		GFF5103	0.34	+0.1
5,090,946	+		GFF5103	0.34	-1.7
5,090,946	+		GFF5103	0.34	-0.9
5,090,946	+		GFF5103	0.34	-2.4
5,090,946	+		GFF5103	0.34	-1.5
5,090,946	+		GFF5103	0.34	+0.1
5,090,946	+		GFF5103	0.34	-1.0
5,090,946	+		GFF5103	0.34	-0.2
5,090,949	-		GFF5103	0.35	-1.1
5,090,954	-		GFF5103	0.36	-0.8
5,090,954	-		GFF5103	0.36	-0.7
5,090,954	-		GFF5103	0.36	-0.9
5,090,954	-		GFF5103	0.36	-1.7
5,090,954	-		GFF5103	0.36	-0.3
5,090,954	-		GFF5103	0.36	-2.0
5,090,954	-		GFF5103	0.36	-0.9
5,090,985	+		GFF5103	0.41	+0.0
5,090,985	+		GFF5103	0.41	-2.0
5,090,991	-		GFF5103	0.42	-1.1
5,090,991	-		GFF5103	0.42	-1.8
5,090,993	-		GFF5103	0.42	-1.0
5,090,993	-		GFF5103	0.42	-0.2
5,090,993	-		GFF5103	0.42	-1.2
5,090,993	-		GFF5103	0.42	-2.4
5,090,993	-		GFF5103	0.42	-1.2
5,090,999	-		GFF5103	0.44	-2.5
5,090,999	-		GFF5103	0.44	-1.5
5,091,006	-		GFF5103	0.45	-1.8
5,091,008	+		GFF5103	0.45	+0.1
5,091,010	+		GFF5103	0.45	-1.5
5,091,016	+		GFF5103	0.46	-2.1
5,091,018	-		GFF5103	0.47	-1.7
5,091,021	+		GFF5103	0.47	-0.6
5,091,021	+		GFF5103	0.47	-1.4
5,091,021	+		GFF5103	0.47	-1.8
5,091,021	+		GFF5103	0.47	-1.8
5,091,021	+		GFF5103	0.47	-2.3
5,091,021	+		GFF5103	0.47	+0.8
5,091,021	+		GFF5103	0.47	-2.6
5,091,029	-		GFF5103	0.49	-1.8
5,091,029	-		GFF5103	0.49	-2.2
5,091,029	-		GFF5103	0.49	+0.7
5,091,029	-		GFF5103	0.49	-1.9
5,091,034	-		GFF5103	0.50	+0.6
5,091,068	+		GFF5103	0.56	-1.9
5,091,081	-		GFF5103	0.58	-0.4
5,091,095	-		GFF5103	0.60	-2.4
5,091,100	+		GFF5103	0.61	+0.4
5,091,108	-		GFF5103	0.63	-0.5
5,091,139	+		GFF5103	0.68	-1.5
5,091,153	-		GFF5103	0.71	-0.8
5,091,155	+		GFF5103	0.71	-1.8
5,091,163	-		GFF5103	0.72	-1.3
5,091,167	+		GFF5103	0.73	-0.9
5,091,194	-		GFF5103	0.78	-0.5
5,091,199	+		GFF5103	0.79	+0.2
5,091,207	-		GFF5103	0.80	-2.3
5,091,225	+		GFF5103	0.83	-1.8
5,091,230	-		GFF5103	0.84	-2.7
5,091,272	-				-1.9
5,091,273	-				-1.6
5,091,276	+				-2.5
5,091,276	+				-1.2
5,091,284	-				-1.5
5,091,284	-				-1.5
5,091,286	-				-1.3
5,091,292	+				-1.7
5,091,292	+				-1.1
5,091,392	+				+0.4
5,091,392	+				+0.2
5,091,392	+				-0.3
5,091,394	-				+0.2
5,091,400	+				-1.8
5,091,400	+				-2.4
5,091,400	-				-2.0
5,091,400	-				-2.1
5,091,400	-				-1.4
5,091,402	+				-2.5
5,091,405	+				-0.4
5,091,408	-				+1.1
5,091,408	-				-1.0
5,091,408	-				-0.1
5,091,408	-				-1.5
5,091,410	-				-1.4
5,091,458	-				+0.4
5,091,474	+				-1.8
5,091,499	+				+0.8
5,091,505	-		GFF5104	0.10	-1.9
5,091,507	-		GFF5104	0.11	+0.3
5,091,518	-		GFF5104	0.12	-1.4
5,091,528	-		GFF5104	0.12	-1.9
5,091,528	-		GFF5104	0.12	-1.4
5,091,529	+		GFF5104	0.13	-0.7
5,091,529	+		GFF5104	0.13	-1.2
5,091,529	+		GFF5104	0.13	-2.4
5,091,529	+		GFF5104	0.13	-1.5
5,091,529	+		GFF5104	0.13	-1.4
5,091,529	+		GFF5104	0.13	-2.4
5,091,529	+		GFF5104	0.13	+0.5
5,091,529	+		GFF5104	0.13	-1.5
5,091,529	+		GFF5104	0.13	-2.0
5,091,536	+		GFF5104	0.13	-1.5
5,091,536	+		GFF5104	0.13	-0.8
5,091,537	-		GFF5104	0.13	-1.3
5,091,537	-		GFF5104	0.13	-1.1
5,091,537	-		GFF5104	0.13	+0.1
5,091,537	-		GFF5104	0.13	-1.3
5,091,537	-		GFF5104	0.13	-1.0
5,091,537	-		GFF5104	0.13	-2.2
5,091,537	-		GFF5104	0.13	-0.5
5,091,537	-		GFF5104	0.13	-1.7
5,091,537	-		GFF5104	0.13	-2.1
5,091,537	-		GFF5104	0.13	-2.2
5,091,537	-		GFF5104	0.13	-0.7
5,091,544	-		GFF5104	0.14	-1.2
5,091,544	-		GFF5104	0.14	-0.4
5,091,544	-		GFF5104	0.14	-0.9
5,091,544	-		GFF5104	0.14	-1.4
5,091,552	-		GFF5104	0.15	-1.7
5,091,558	+		GFF5104	0.15	-1.1
5,091,566	-		GFF5104	0.16	-0.2
5,091,566	-		GFF5104	0.16	+0.2
5,091,566	-		GFF5104	0.16	-0.0
5,091,573	-		GFF5104	0.16	-1.3
5,091,578	-		GFF5104	0.17	-3.1
5,091,607	+		GFF5104	0.19	+0.3
5,091,607	+		GFF5104	0.19	-0.8
5,091,607	+		GFF5104	0.19	-1.0
5,091,619	-		GFF5104	0.21	+0.5
5,091,634	-		GFF5104	0.22	+0.2
5,091,637	+		GFF5104	0.22	-0.8
5,091,645	-		GFF5104	0.23	-0.6
5,091,652	-		GFF5104	0.24	-0.3
5,091,656	+		GFF5104	0.24	+0.4
5,091,656	+		GFF5104	0.24	-2.5
5,091,675	+		GFF5104	0.26	-0.0
5,091,680	+		GFF5104	0.26	-1.5
5,091,680	+		GFF5104	0.26	-1.1
5,091,681	-		GFF5104	0.26	-0.4
5,091,682	+		GFF5104	0.26	-1.4
5,091,682	+		GFF5104	0.26	-0.8
5,091,688	-		GFF5104	0.27	-0.8
5,091,688	-		GFF5104	0.27	-1.1
5,091,688	-		GFF5104	0.27	-1.4
5,091,688	-		GFF5104	0.27	-0.8
5,091,688	-		GFF5104	0.27	-1.1
5,091,690	-		GFF5104	0.27	-0.2
5,091,757	+		GFF5104	0.33	-0.8
5,091,761	-		GFF5104	0.33	-2.3
5,091,761	-		GFF5104	0.33	+0.4
5,091,761	-		GFF5104	0.33	-1.9
5,091,764	+		GFF5104	0.34	+0.2
5,091,770	-		GFF5104	0.34	-0.8
5,091,818	+		GFF5104	0.38	-1.1
5,091,818	+		GFF5104	0.38	-2.5
5,091,834	+		GFF5104	0.40	-1.0
5,091,842	-		GFF5104	0.40	+0.5
5,091,844	-		GFF5104	0.41	-0.9
5,091,847	+		GFF5104	0.41	-0.1
5,091,855	+		GFF5104	0.42	-1.8
5,091,855	+		GFF5104	0.42	-3.0
5,091,863	-		GFF5104	0.42	-0.5
5,091,865	-		GFF5104	0.43	+0.0
5,091,865	-		GFF5104	0.43	-1.8
5,091,906	+		GFF5104	0.46	-0.9
5,091,914	-		GFF5104	0.47	-0.2
5,091,929	+		GFF5104	0.48	-0.5
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5,091,937	-		GFF5104	0.49	-1.5
5,091,972	+		GFF5104	0.52	-2.1
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5,091,979	-		GFF5104	0.53	-0.0
5,091,979	-		GFF5104	0.53	-1.5
5,091,980	-		GFF5104	0.53	+0.9
5,092,019	-		GFF5104	0.56	-1.5
5,092,020	+		GFF5104	0.56	-2.7
5,092,049	-		GFF5104	0.59	-0.0
5,092,068	-		GFF5104	0.61	-1.8
5,092,068	-		GFF5104	0.61	-0.6
5,092,082	+		GFF5104	0.62	-0.8
5,092,098	+		GFF5104	0.63	+0.6
5,092,098	+		GFF5104	0.63	-0.4
5,092,110	-		GFF5104	0.64	+0.2
5,092,110	-		GFF5104	0.64	-0.0
5,092,144	-		GFF5104	0.67	-0.5
5,092,155	-		GFF5104	0.68	-1.0
5,092,167	-		GFF5104	0.70	-0.3
5,092,216	-		GFF5104	0.74	+0.6
5,092,216	-		GFF5104	0.74	-1.9
5,092,226	+		GFF5104	0.75	-2.4
5,092,227	+		GFF5104	0.75	-0.9
5,092,227	+		GFF5104	0.75	-1.3
5,092,227	+		GFF5104	0.75	-0.0
5,092,227	+		GFF5104	0.75	-2.3
5,092,227	+		GFF5104	0.75	-2.4
5,092,227	+		GFF5104	0.75	-2.3
5,092,227	+		GFF5104	0.75	-2.4
5,092,227	+		GFF5104	0.75	-2.2
5,092,227	+		GFF5104	0.75	-0.9
5,092,227	+		GFF5104	0.75	-0.0
5,092,227	+		GFF5104	0.75	-2.6
5,092,227	+		GFF5104	0.75	-2.3
5,092,227	+		GFF5104	0.75	+0.3
5,092,227	+		GFF5104	0.75	-0.8
5,092,235	-		GFF5104	0.76	-0.1
5,092,235	-		GFF5104	0.76	+0.3
5,092,235	-		GFF5104	0.76	-1.5
5,092,235	-		GFF5104	0.76	-1.9
5,092,235	-		GFF5104	0.76	-0.4
5,092,235	-		GFF5104	0.76	-1.3
5,092,235	-		GFF5104	0.76	-2.0
5,092,235	-		GFF5104	0.76	-1.3
5,092,235	-		GFF5104	0.76	-1.3
5,092,238	+		GFF5104	0.76	-1.2
5,092,283	-		GFF5104	0.80	-2.1
5,092,315	+		GFF5104	0.83	-0.1
5,092,317	-		GFF5104	0.83	-2.5