Strain Fitness in Sphingobium sp. HT1-2 around GFF5064

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,059,374	+				-0.8
5,059,376	+				-0.4
5,059,401	+				-1.1
5,059,406	+				+0.1
5,059,409	-				-0.7
5,059,419	-				-0.8
5,059,429	+				-0.4
5,059,495	+				+0.1
5,059,495	+				+0.3
5,059,503	-				+0.3
5,059,503	-				+0.2
5,059,536	+		GFF5063	0.13	+0.5
5,059,536	+		GFF5063	0.13	+0.3
5,059,544	-		GFF5063	0.14	-0.8
5,059,547	+		GFF5063	0.14	-0.2
5,059,553	+		GFF5063	0.15	-2.3
5,059,561	-		GFF5063	0.16	+0.5
5,059,561	-		GFF5063	0.16	-1.5
5,059,566	+		GFF5063	0.16	+0.2
5,059,566	+		GFF5063	0.16	+0.3
5,059,572	+		GFF5063	0.17	+1.0
5,059,574	-		GFF5063	0.17	-0.8
5,059,574	-		GFF5063	0.17	-0.3
5,059,574	-		GFF5063	0.17	+0.5
5,059,574	-		GFF5063	0.17	-0.7
5,059,574	-		GFF5063	0.17	-1.1
5,059,598	+		GFF5063	0.20	+0.8
5,059,606	-		GFF5063	0.20	-1.5
5,059,608	+		GFF5063	0.21	-1.1
5,059,608	+		GFF5063	0.21	-1.7
5,059,617	-		GFF5063	0.22	-0.4
5,059,633	+		GFF5063	0.23	+0.9
5,059,638	-		GFF5063	0.24	-0.7
5,059,654	-		GFF5063	0.26	+0.8
5,059,677	+		GFF5063	0.28	+0.6
5,059,677	+		GFF5063	0.28	-1.2
5,059,688	+		GFF5063	0.29	-1.1
5,059,718	+		GFF5063	0.33	-1.2
5,059,718	+		GFF5063	0.33	+0.8
5,059,723	+		GFF5063	0.33	+0.5
5,059,726	-		GFF5063	0.34	-0.7
5,059,726	-		GFF5063	0.34	-0.9
5,059,726	-		GFF5063	0.34	+0.0
5,059,726	-		GFF5063	0.34	+0.2
5,059,741	-		GFF5063	0.35	+0.1
5,059,741	-		GFF5063	0.35	-0.1
5,059,741	-		GFF5063	0.35	+0.0
5,059,743	+		GFF5063	0.36	+1.0
5,059,743	+		GFF5063	0.36	-0.8
5,059,747	+		GFF5063	0.36	-0.7
5,059,751	-		GFF5063	0.36	+0.4
5,059,752	+		GFF5063	0.37	+1.0
5,059,755	-		GFF5063	0.37	-1.3
5,059,762	-		GFF5063	0.38	+1.0
5,059,766	+		GFF5063	0.38	+0.5
5,059,768	-		GFF5063	0.38	-0.7
5,059,774	-		GFF5063	0.39	-0.1
5,059,791	+		GFF5063	0.41	+0.5
5,059,818	+		GFF5063	0.44	-0.1
5,059,823	+		GFF5063	0.44	-0.2
5,059,826	-		GFF5063	0.45	-0.3
5,059,836	-		GFF5063	0.46	-1.2
5,059,842	-		GFF5063	0.46	-0.1
5,059,864	-		GFF5063	0.49	+0.5
5,059,875	+		GFF5063	0.50	+0.7
5,059,875	+		GFF5063	0.50	+0.6
5,059,875	+		GFF5063	0.50	-1.2
5,059,875	+		GFF5063	0.50	+0.2
5,059,875	+		GFF5063	0.50	-1.2
5,059,875	+		GFF5063	0.50	+0.8
5,059,883	-		GFF5063	0.51	+0.8
5,059,888	-		GFF5063	0.51	-1.2
5,059,915	+		GFF5063	0.54	+0.1
5,059,923	-		GFF5063	0.55	+0.2
5,059,931	-		GFF5063	0.56	+1.8
5,059,931	-		GFF5063	0.56	+0.4
5,059,958	+		GFF5063	0.59	+0.5
5,059,958	+		GFF5063	0.59	-1.2
5,059,958	+		GFF5063	0.59	-0.7
5,059,961	-		GFF5063	0.60	+0.0
5,059,966	-		GFF5063	0.60	-1.7
5,059,966	-		GFF5063	0.60	-0.2
5,060,111	+		GFF5063	0.76	+0.1
5,060,111	+		GFF5063	0.76	+0.0
5,060,111	+		GFF5063	0.76	+0.8
5,060,144	+		GFF5063	0.80	+0.3
5,060,144	+		GFF5063	0.80	-1.2
5,060,147	-		GFF5063	0.80	-0.7
5,060,152	-		GFF5063	0.81	+1.1
5,060,162	-		GFF5063	0.82	-0.1
5,060,168	-		GFF5063	0.82	-2.4
5,060,176	+		GFF5063	0.83	-1.8
5,060,180	+		GFF5063	0.84	+1.1
5,060,190	+		GFF5063	0.85	-0.3
5,060,198	-		GFF5063	0.86	+0.3
5,060,219	-		GFF5063	0.88	-0.7
5,060,219	-		GFF5063	0.88	-0.7
5,060,245	-				+1.1
5,060,247	-				-1.2
5,060,298	+				+0.5
5,060,298	+				+0.3
5,060,298	+				-0.7
5,060,306	-				-1.0
5,060,306	-				-0.8
5,060,306	-				-0.7
5,060,306	-				-0.1
5,060,306	-				-1.2
5,060,313	+				-1.2
5,060,321	-				+1.0
5,060,355	-				-1.3
5,060,355	-				+1.0
5,060,390	+				-0.8
5,060,395	+				-1.6
5,060,403	+				-0.2
5,060,411	-				+1.0
5,060,411	-				-0.6
5,060,411	-				+0.1
5,060,411	-				-0.2
5,060,413	+				+0.2
5,060,421	-				-0.4
5,060,421	-				+0.2
5,060,421	-				+0.6
5,060,424	+				-0.4
5,060,469	-		GFF5064	0.11	+0.3
5,060,486	+		GFF5064	0.12	-1.2
5,060,502	-		GFF5064	0.14	-0.5
5,060,519	-		GFF5064	0.15	+1.5
5,060,527	+		GFF5064	0.16	+0.5
5,060,527	+		GFF5064	0.16	+0.3
5,060,527	+		GFF5064	0.16	+0.5
5,060,527	+		GFF5064	0.16	+0.8
5,060,529	-		GFF5064	0.16	-0.8
5,060,532	+		GFF5064	0.16	-0.3
5,060,532	+		GFF5064	0.16	+0.8
5,060,532	+		GFF5064	0.16	+1.3
5,060,532	+		GFF5064	0.16	+1.0
5,060,532	+		GFF5064	0.16	-0.4
5,060,532	+		GFF5064	0.16	-0.8
5,060,532	+		GFF5064	0.16	-1.5
5,060,532	+		GFF5064	0.16	-1.5
5,060,532	+		GFF5064	0.16	+0.0
5,060,532	+		GFF5064	0.16	-0.3
5,060,532	+		GFF5064	0.16	-0.2
5,060,537	+		GFF5064	0.17	-1.3
5,060,537	+		GFF5064	0.17	-0.5
5,060,540	-		GFF5064	0.17	-1.0
5,060,540	-		GFF5064	0.17	+0.8
5,060,540	-		GFF5064	0.17	-0.1
5,060,540	-		GFF5064	0.17	+0.8
5,060,540	-		GFF5064	0.17	-1.5
5,060,540	-		GFF5064	0.17	-0.5
5,060,540	-		GFF5064	0.17	-0.8
5,060,540	-		GFF5064	0.17	-0.8
5,060,540	-		GFF5064	0.17	-0.7
5,060,540	-		GFF5064	0.17	+0.9
5,060,540	-		GFF5064	0.17	-1.2
5,060,540	-		GFF5064	0.17	+1.3
5,060,540	-		GFF5064	0.17	-3.1
5,060,540	-		GFF5064	0.17	+0.1
5,060,540	-		GFF5064	0.17	-1.1
5,060,542	+		GFF5064	0.17	+0.4
5,060,545	-		GFF5064	0.17	-1.1
5,060,550	-		GFF5064	0.18	-0.1
5,060,587	+		GFF5064	0.21	+0.5
5,060,592	+		GFF5064	0.21	+0.6
5,060,598	+		GFF5064	0.22	+0.3
5,060,606	-		GFF5064	0.22	-1.9
5,060,626	-		GFF5064	0.24	-0.4
5,060,658	-		GFF5064	0.27	+1.3
5,060,665	+		GFF5064	0.27	-0.1
5,060,665	+		GFF5064	0.27	+0.5
5,060,665	+		GFF5064	0.27	-0.3
5,060,665	+		GFF5064	0.27	+0.4
5,060,665	+		GFF5064	0.27	+0.8
5,060,665	+		GFF5064	0.27	-2.1
5,060,665	+		GFF5064	0.27	+0.5
5,060,665	+		GFF5064	0.27	+1.1
5,060,665	+		GFF5064	0.27	-2.2
5,060,665	+		GFF5064	0.27	+1.0
5,060,673	-		GFF5064	0.28	+0.6
5,060,673	-		GFF5064	0.28	-0.7
5,060,673	-		GFF5064	0.28	+0.9
5,060,753	-		GFF5064	0.34	-0.7
5,060,753	-		GFF5064	0.34	-0.5
5,060,760	+		GFF5064	0.35	-2.2
5,060,787	+		GFF5064	0.37	+0.5
5,060,804	+		GFF5064	0.39	-0.9
5,060,822	-		GFF5064	0.40	-1.4
5,060,833	+		GFF5064	0.41	-0.8
5,060,841	+		GFF5064	0.42	+0.5
5,060,856	-		GFF5064	0.43	+0.1
5,060,856	-		GFF5064	0.43	-1.3
5,060,856	-		GFF5064	0.43	+0.6
5,060,881	+		GFF5064	0.45	-1.0
5,060,965	+		GFF5064	0.52	-1.8
5,060,979	+		GFF5064	0.53	+0.5
5,060,979	+		GFF5064	0.53	+0.5
5,060,987	-		GFF5064	0.54	+0.9
5,060,987	-		GFF5064	0.54	+1.2
5,060,987	-		GFF5064	0.54	+0.1
5,060,989	+		GFF5064	0.54	-0.9
5,061,007	+		GFF5064	0.55	+0.8
5,061,046	+		GFF5064	0.58	+1.8
5,061,081	+		GFF5064	0.61	-1.4
5,061,081	+		GFF5064	0.61	-0.9
5,061,081	+		GFF5064	0.61	-1.0
5,061,081	+		GFF5064	0.61	-0.3
5,061,086	+		GFF5064	0.62	-0.8
5,061,089	+		GFF5064	0.62	+0.5
5,061,089	+		GFF5064	0.62	-2.4
5,061,089	-		GFF5064	0.62	-0.8
5,061,089	-		GFF5064	0.62	-1.7
5,061,089	-		GFF5064	0.62	+0.6
5,061,089	-		GFF5064	0.62	+0.7
5,061,089	-		GFF5064	0.62	+1.0
5,061,089	-		GFF5064	0.62	-0.4
5,061,094	-		GFF5064	0.62	+0.9
5,061,099	-		GFF5064	0.63	+1.1
5,061,099	-		GFF5064	0.63	-1.0
5,061,118	+		GFF5064	0.64	-0.8
5,061,128	+		GFF5064	0.65	-0.1
5,061,131	-		GFF5064	0.65	-1.4
5,061,141	+		GFF5064	0.66	-0.1
5,061,141	+		GFF5064	0.66	+0.0
5,061,141	+		GFF5064	0.66	-0.5
5,061,141	+		GFF5064	0.66	-0.9
5,061,149	-		GFF5064	0.67	+0.2
5,061,149	-		GFF5064	0.67	-1.2
5,061,149	-		GFF5064	0.67	+0.6
5,061,149	-		GFF5064	0.67	+0.3
5,061,149	-		GFF5064	0.67	-0.5
5,061,149	-		GFF5064	0.67	+0.1
5,061,149	-		GFF5064	0.67	+0.7
5,061,149	-		GFF5064	0.67	+0.1
5,061,155	+		GFF5064	0.67	+0.5
5,061,163	-		GFF5064	0.68	-1.8
5,061,186	-		GFF5064	0.70	+1.8
5,061,199	+		GFF5064	0.71	-1.9
5,061,207	-		GFF5064	0.72	+0.3
5,061,220	+		GFF5064	0.73	-0.2
5,061,226	-		GFF5064	0.73	+0.7
5,061,228	+		GFF5064	0.73	-1.8
5,061,317	+		GFF5064	0.81	-0.9
5,061,325	-		GFF5064	0.81	-1.8
5,061,333	+		GFF5064	0.82	-1.4
5,061,341	-		GFF5064	0.83	+0.6
5,061,341	-		GFF5064	0.83	-0.9
5,061,341	-		GFF5064	0.83	-1.7
5,061,373	+		GFF5064	0.85	-1.8
5,061,380	+		GFF5064	0.86	-0.2
5,061,387	-		GFF5064	0.87	-0.2
5,061,412	-		GFF5064	0.89	-0.1
5,061,430	-				+0.7
5,061,431	-				-0.8
5,061,452	-				-0.2
5,061,452	-				+0.6
5,061,453	+				+0.2
5,061,532	-				-0.1
5,061,535	+				-0.8
5,061,536	-				-2.2
5,061,543	-				+0.3
5,061,556	+				-0.7
5,061,568	-				+0.5
5,061,568	-				-1.3
5,061,579	-				-0.4
5,061,592	+				-0.9
5,061,600	+				-0.9
5,061,601	-				-1.0
5,061,608	-				+0.5
5,061,608	-				-1.1
5,061,611	+				-0.5
5,061,615	+				+1.8
5,061,632	+				-1.0
5,061,636	+		GFF5065	0.10	-0.9
5,061,644	-		GFF5065	0.11	+0.5
5,061,644	-		GFF5065	0.11	-1.2
5,061,644	-		GFF5065	0.11	+1.0
5,061,644	-		GFF5065	0.11	-1.0
5,061,644	-		GFF5065	0.11	+1.0
5,061,644	-		GFF5065	0.11	+1.0
5,061,644	-		GFF5065	0.11	+0.3
5,061,646	+		GFF5065	0.11	-1.2
5,061,646	+		GFF5065	0.11	-1.3
5,061,654	-		GFF5065	0.12	-0.1
5,061,656	+		GFF5065	0.13	-0.5
5,061,656	+		GFF5065	0.13	+0.8
5,061,656	+		GFF5065	0.13	-0.1
5,061,656	+		GFF5065	0.13	+0.0
5,061,656	+		GFF5065	0.13	+0.6
5,061,656	+		GFF5065	0.13	-0.9
5,061,656	+		GFF5065	0.13	-0.3
5,061,664	-		GFF5065	0.13	+1.8
5,061,664	-		GFF5065	0.13	+0.4
5,061,664	-		GFF5065	0.13	+0.4
5,061,664	-		GFF5065	0.13	-1.7
5,061,664	-		GFF5065	0.13	-0.9
5,061,664	-		GFF5065	0.13	-1.3
5,061,664	-		GFF5065	0.13	-0.5
5,061,681	+		GFF5065	0.15	-1.3
5,061,694	+		GFF5065	0.17	-0.8
5,061,710	-		GFF5065	0.19	+0.4
5,061,722	+		GFF5065	0.20	+2.2
5,061,746	+		GFF5065	0.23	+1.1
5,061,761	-		GFF5065	0.25	+1.1
5,061,777	+		GFF5065	0.27	+1.5
5,061,777	+		GFF5065	0.27	-1.2
5,061,777	+		GFF5065	0.27	-1.0
5,061,777	+		GFF5065	0.27	-0.8
5,061,838	-		GFF5065	0.34	+0.3
5,061,878	+		GFF5065	0.38	+0.5
5,061,892	+		GFF5065	0.40	-0.5
5,061,908	+		GFF5065	0.42	+0.5
5,061,908	+		GFF5065	0.42	-0.5
5,061,916	-		GFF5065	0.43	-0.7
5,061,916	-		GFF5065	0.43	-1.7
5,061,916	-		GFF5065	0.43	-1.2
5,061,946	+		GFF5065	0.46	+1.3
5,061,968	+		GFF5065	0.49	-1.0
5,061,973	-		GFF5065	0.49	-0.4
5,061,974	+		GFF5065	0.49	-1.0
5,061,976	-		GFF5065	0.49	-0.8
5,061,976	-		GFF5065	0.49	+0.1
5,061,976	-		GFF5065	0.49	-1.6
5,061,976	-		GFF5065	0.49	-2.2
5,061,994	+		GFF5065	0.52	-1.0
5,062,020	-		GFF5065	0.55	+0.7
5,062,020	-		GFF5065	0.55	-2.7
5,062,098	-		GFF5065	0.64	+0.3
5,062,155	-		GFF5065	0.70	-0.1
5,062,155	-		GFF5065	0.70	-0.4
5,062,155	-		GFF5065	0.70	-1.5
5,062,198	-		GFF5065	0.75	-0.2
5,062,231	-		GFF5065	0.79	-1.1
5,062,232	-		GFF5065	0.79	-0.2
5,062,232	-		GFF5065	0.79	-1.4
5,062,261	+		GFF5065	0.82	-2.2
5,062,274	+		GFF5065	0.84	-0.2
5,062,299	-		GFF5065	0.87	-0.9
5,062,339	-				-1.2
5,062,345	-				+0.9
5,062,345	-				-1.1
5,062,345	-				-0.8
5,062,345	-				-0.9
5,062,346	+				-0.5
5,062,352	-				-0.5
5,062,354	-				+0.9
5,062,372	-				+0.9
5,062,379	+				-0.5
5,062,392	+				+1.3
5,062,393	+				-2.4
5,062,522	+				-1.6
5,062,532	+				+0.4
5,062,540	-				-0.3