Strain Fitness in Sphingobium sp. HT1-2 around GFF5062

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,057,196	-				+0.6
5,057,214	+				-0.5
5,057,219	+				-1.4
5,057,222	-				+0.9
5,057,222	-				-0.6
5,057,222	-				+2.2
5,057,234	+				-1.0
5,057,242	-				+1.0
5,057,253	+				-2.1
5,057,255	-				+1.5
5,057,261	-				-0.8
5,057,261	-				+0.5
5,057,261	-				+1.1
5,057,267	-				-1.4
5,057,268	-				-1.5
5,057,288	-				-2.2
5,057,293	+				+0.0
5,057,293	+				-1.0
5,057,301	-				-0.3
5,057,301	-				+1.4
5,057,312	+				-1.2
5,057,312	+				+0.2
5,057,315	+				-1.6
5,057,315	+				+1.0
5,057,315	+				+0.4
5,057,315	+				-0.1
5,057,315	+				+1.4
5,057,317	+				+1.1
5,057,320	-				-0.6
5,057,323	-				-1.5
5,057,323	-				+0.4
5,057,323	-				-0.5
5,057,323	-				+1.8
5,057,323	-				+1.5
5,057,323	-				-0.3
5,057,323	-				-0.4
5,057,325	-				+0.8
5,057,349	+				-1.1
5,057,446	+		GFF5060	0.13	-0.3
5,057,453	+		GFF5060	0.15	-0.1
5,057,455	-		GFF5060	0.15	+0.1
5,057,481	+		GFF5060	0.20	-1.0
5,057,481	+		GFF5060	0.20	-1.4
5,057,481	+		GFF5060	0.20	-0.5
5,057,481	+		GFF5060	0.20	+0.1
5,057,481	+		GFF5060	0.20	-0.2
5,057,489	-		GFF5060	0.22	-1.6
5,057,524	+		GFF5060	0.29	-1.0
5,057,560	+		GFF5060	0.37	-3.4
5,057,570	-		GFF5060	0.39	-1.8
5,057,571	-		GFF5060	0.39	-0.1
5,057,573	+		GFF5060	0.40	+0.6
5,057,580	+		GFF5060	0.41	-0.4
5,057,581	-		GFF5060	0.41	+0.5
5,057,583	+		GFF5060	0.42	-1.4
5,057,585	+		GFF5060	0.42	+0.2
5,057,590	+		GFF5060	0.43	-2.1
5,057,611	+		GFF5060	0.47	-1.7
5,057,619	-		GFF5060	0.49	+0.2
5,057,628	+		GFF5060	0.51	-0.4
5,057,634	+		GFF5060	0.52	+0.4
5,057,634	+		GFF5060	0.52	-0.9
5,057,634	+		GFF5060	0.52	+0.5
5,057,634	+		GFF5060	0.52	+0.7
5,057,639	+		GFF5060	0.53	-1.3
5,057,640	+		GFF5060	0.54	-1.2
5,057,642	-		GFF5060	0.54	+0.1
5,057,642	-		GFF5060	0.54	-1.3
5,057,642	-		GFF5060	0.54	-0.9
5,057,647	-		GFF5060	0.55	+0.7
5,057,647	-		GFF5060	0.55	-1.8
5,057,653	+		GFF5060	0.56	+1.4
5,057,655	+		GFF5060	0.57	-0.5
5,057,663	-		GFF5060	0.58	+0.9
5,057,666	+		GFF5060	0.59	-0.8
5,057,678	+		GFF5060	0.61	-0.6
5,057,708	-		GFF5060	0.68	-0.9
5,057,737	-		GFF5060	0.74	+1.2
5,057,749	+		GFF5060	0.76	+1.1
5,057,795	+		GFF5060	0.86	+0.8
5,057,795	+		GFF5060	0.86	-0.4
5,057,795	+		GFF5060	0.86	+0.2
5,057,795	+		GFF5060	0.86	-1.3
5,057,845	+				+0.0
5,057,845	+				+0.3
5,057,845	+				-0.3
5,057,853	-				-2.2
5,057,853	-				-0.5
5,057,853	-				-0.7
5,057,853	-				+1.5
5,057,853	-				-0.3
5,057,853	-				-0.7
5,057,853	-				+0.7
5,057,853	-				+0.1
5,057,853	-				-0.3
5,057,853	-				+0.7
5,057,853	-				+0.5
5,057,863	+				-1.5
5,057,894	+		GFF5061	0.14	-0.5
5,057,929	+		GFF5061	0.27	-1.3
5,057,941	+		GFF5061	0.31	+0.1
5,057,949	-		GFF5061	0.34	-1.2
5,057,972	-		GFF5061	0.42	+1.5
5,057,989	+		GFF5061	0.49	+1.2
5,057,994	+		GFF5061	0.50	+0.2
5,058,024	+		GFF5061	0.61	+0.5
5,058,024	+		GFF5061	0.61	-0.8
5,058,024	+		GFF5061	0.61	-2.7
5,058,032	-		GFF5061	0.64	+0.3
5,058,032	-		GFF5061	0.64	+1.2
5,058,032	-		GFF5061	0.64	-1.1
5,058,036	-		GFF5061	0.66	+0.5
5,058,117	+				-0.5
5,058,132	-				-1.1
5,058,132	-				-1.2
5,058,166	+				+0.0
5,058,174	+				-0.4
5,058,188	+				-1.5
5,058,196	-				-1.0
5,058,196	-				-0.8
5,058,196	-				+0.1
5,058,201	-				+0.2
5,058,203	-				-1.2
5,058,213	-				+1.4
5,058,213	-				-1.0
5,058,213	-				-0.5
5,058,213	-				-1.0
5,058,239	+				+1.9
5,058,239	+				+0.3
5,058,241	+				-0.8
5,058,272	-				-0.2
5,058,320	+		GFF5062	0.12	+0.1
5,058,321	-		GFF5062	0.12	-0.3
5,058,330	+		GFF5062	0.13	+0.4
5,058,359	+		GFF5062	0.16	-0.4
5,058,359	+		GFF5062	0.16	+1.1
5,058,359	+		GFF5062	0.16	-0.8
5,058,359	+		GFF5062	0.16	+0.3
5,058,367	-		GFF5062	0.16	+1.1
5,058,410	+		GFF5062	0.20	+0.3
5,058,430	-		GFF5062	0.21	-0.8
5,058,470	-		GFF5062	0.25	-1.8
5,058,479	-		GFF5062	0.25	-1.5
5,058,479	-		GFF5062	0.25	-0.2
5,058,481	-		GFF5062	0.26	+0.5
5,058,484	+		GFF5062	0.26	-0.5
5,058,484	+		GFF5062	0.26	+0.1
5,058,503	+		GFF5062	0.27	-0.8
5,058,503	+		GFF5062	0.27	+0.2
5,058,503	+		GFF5062	0.27	-0.4
5,058,503	+		GFF5062	0.27	+1.3
5,058,503	+		GFF5062	0.27	-1.0
5,058,503	+		GFF5062	0.27	+1.0
5,058,503	+		GFF5062	0.27	-0.1
5,058,511	-		GFF5062	0.28	+0.2
5,058,511	-		GFF5062	0.28	+0.6
5,058,511	-		GFF5062	0.28	-1.3
5,058,511	-		GFF5062	0.28	-0.3
5,058,511	-		GFF5062	0.28	-2.1
5,058,511	-		GFF5062	0.28	+0.4
5,058,511	-		GFF5062	0.28	+0.9
5,058,513	-		GFF5062	0.28	-0.2
5,058,539	+		GFF5062	0.30	-1.6
5,058,539	+		GFF5062	0.30	-0.5
5,058,547	-		GFF5062	0.31	+1.1
5,058,547	-		GFF5062	0.31	-2.2
5,058,551	+		GFF5062	0.31	-1.0
5,058,559	-		GFF5062	0.32	-0.7
5,058,559	-		GFF5062	0.32	-2.4
5,058,559	-		GFF5062	0.32	+0.6
5,058,560	+		GFF5062	0.32	+0.3
5,058,562	-		GFF5062	0.32	-0.5
5,058,590	-		GFF5062	0.35	-0.1
5,058,595	+		GFF5062	0.35	+0.3
5,058,595	+		GFF5062	0.35	+0.3
5,058,595	+		GFF5062	0.35	+0.4
5,058,595	+		GFF5062	0.35	+0.9
5,058,600	+		GFF5062	0.35	-1.3
5,058,600	+		GFF5062	0.35	-0.3
5,058,600	+		GFF5062	0.35	-0.1
5,058,603	-		GFF5062	0.36	-0.5
5,058,603	-		GFF5062	0.36	-0.9
5,058,603	-		GFF5062	0.36	-1.3
5,058,605	+		GFF5062	0.36	-1.6
5,058,605	+		GFF5062	0.36	-0.9
5,058,605	+		GFF5062	0.36	-1.9
5,058,605	+		GFF5062	0.36	-0.7
5,058,605	+		GFF5062	0.36	-1.3
5,058,608	-		GFF5062	0.36	+1.0
5,058,608	-		GFF5062	0.36	-0.5
5,058,608	-		GFF5062	0.36	+0.9
5,058,608	-		GFF5062	0.36	+0.5
5,058,608	-		GFF5062	0.36	+0.2
5,058,608	-		GFF5062	0.36	-0.5
5,058,613	-		GFF5062	0.37	-0.2
5,058,613	-		GFF5062	0.37	-1.0
5,058,613	-		GFF5062	0.37	+0.8
5,058,613	-		GFF5062	0.37	-0.7
5,058,613	-		GFF5062	0.37	+0.1
5,058,613	-		GFF5062	0.37	-0.8
5,058,613	-		GFF5062	0.37	-1.3
5,058,613	-		GFF5062	0.37	-0.8
5,058,627	+		GFF5062	0.38	-0.0
5,058,668	+		GFF5062	0.41	-0.2
5,058,688	+		GFF5062	0.43	-0.7
5,058,695	+		GFF5062	0.43	-1.7
5,058,695	+		GFF5062	0.43	+0.1
5,058,700	+		GFF5062	0.44	-0.2
5,058,712	+		GFF5062	0.45	+0.5
5,058,715	-		GFF5062	0.45	-1.0
5,058,728	-		GFF5062	0.46	-1.3
5,058,730	+		GFF5062	0.46	-1.1
5,058,730	+		GFF5062	0.46	-0.8
5,058,730	+		GFF5062	0.46	-0.4
5,058,730	+		GFF5062	0.46	+0.0
5,058,730	+		GFF5062	0.46	-0.1
5,058,730	+		GFF5062	0.46	+0.2
5,058,730	+		GFF5062	0.46	+0.2
5,058,730	+		GFF5062	0.46	-0.5
5,058,738	-		GFF5062	0.47	+1.2
5,058,738	-		GFF5062	0.47	-1.2
5,058,738	-		GFF5062	0.47	+0.6
5,058,738	-		GFF5062	0.47	-1.2
5,058,738	-		GFF5062	0.47	-1.9
5,058,738	-		GFF5062	0.47	+0.3
5,058,738	-		GFF5062	0.47	+0.0
5,058,738	-		GFF5062	0.47	-0.2
5,058,741	+		GFF5062	0.47	-0.4
5,058,743	-		GFF5062	0.47	-1.0
5,058,759	+		GFF5062	0.49	-0.8
5,058,812	+		GFF5062	0.53	+0.1
5,058,812	+		GFF5062	0.53	-0.5
5,058,820	-		GFF5062	0.54	+1.1
5,058,841	+		GFF5062	0.55	-0.7
5,058,846	+		GFF5062	0.56	+0.4
5,058,846	+		GFF5062	0.56	-0.5
5,058,846	+		GFF5062	0.56	-0.2
5,058,846	+		GFF5062	0.56	-0.0
5,058,846	+		GFF5062	0.56	-0.0
5,058,854	-		GFF5062	0.56	+0.1
5,058,854	-		GFF5062	0.56	-1.5
5,058,854	-		GFF5062	0.56	-1.1
5,058,854	-		GFF5062	0.56	-1.1
5,058,861	+		GFF5062	0.57	-1.0
5,058,861	+		GFF5062	0.57	-1.3
5,058,866	+		GFF5062	0.57	+0.3
5,058,876	+		GFF5062	0.58	-0.7
5,058,907	+		GFF5062	0.61	-0.1
5,058,907	+		GFF5062	0.61	-0.9
5,058,912	+		GFF5062	0.61	+0.3
5,058,912	+		GFF5062	0.61	+0.6
5,058,913	-		GFF5062	0.61	-1.6
5,058,915	-		GFF5062	0.61	+0.1
5,058,915	-		GFF5062	0.61	-2.3
5,058,915	-		GFF5062	0.61	-1.4
5,058,915	-		GFF5062	0.61	-1.7
5,058,915	-		GFF5062	0.61	-0.8
5,058,920	-		GFF5062	0.62	+0.6
5,058,937	+		GFF5062	0.63	-1.4
5,058,959	+		GFF5062	0.65	+0.1
5,058,984	+		GFF5062	0.67	-1.1
5,058,984	+		GFF5062	0.67	-0.7
5,058,984	+		GFF5062	0.67	+0.3
5,058,989	+		GFF5062	0.68	-0.2
5,058,992	-		GFF5062	0.68	-0.1
5,058,992	-		GFF5062	0.68	-1.2
5,058,992	-		GFF5062	0.68	-0.2
5,058,994	+		GFF5062	0.68	-0.5
5,058,996	+		GFF5062	0.68	+1.2
5,058,997	-		GFF5062	0.68	-0.2
5,059,038	-		GFF5062	0.72	+0.1
5,059,043	-		GFF5062	0.72	-0.0
5,059,043	-		GFF5062	0.72	-0.3
5,059,046	+		GFF5062	0.72	-0.5
5,059,054	-		GFF5062	0.73	-0.9
5,059,054	-		GFF5062	0.73	-0.5
5,059,060	-		GFF5062	0.73	-0.8
5,059,065	+		GFF5062	0.74	-0.3
5,059,073	-		GFF5062	0.75	+0.0
5,059,075	-		GFF5062	0.75	+0.2
5,059,083	-		GFF5062	0.75	+0.0
5,059,102	+		GFF5062	0.77	+0.3
5,059,103	-		GFF5062	0.77	+0.0
5,059,112	+		GFF5062	0.78	+0.3
5,059,118	+		GFF5062	0.78	+1.6
5,059,120	-		GFF5062	0.78	-1.7
5,059,129	+		GFF5062	0.79	+0.6
5,059,131	+		GFF5062	0.79	+1.2
5,059,137	-		GFF5062	0.80	+0.6
5,059,186	+		GFF5062	0.84	-0.7
5,059,189	-		GFF5062	0.84	-1.3
5,059,194	-		GFF5062	0.84	-0.7
5,059,195	-		GFF5062	0.85	+0.2
5,059,199	+		GFF5062	0.85	+1.1
5,059,243	+		GFF5062	0.89	-1.9
5,059,243	+		GFF5062	0.89	+0.2
5,059,303	-				+0.1
5,059,303	-				-1.2
5,059,303	-				-0.9
5,059,303	-				+1.1
5,059,303	-				-0.1
5,059,303	-				-0.0
5,059,326	-				-2.0
5,059,331	-				-1.2
5,059,374	+				-0.8
5,059,376	+				-0.4
5,059,401	+				-1.1
5,059,406	+				+0.1
5,059,409	-				-0.7
5,059,419	-				-0.8
5,059,429	+				-0.4
5,059,495	+				+0.1
5,059,495	+				+0.3
5,059,503	-				+0.3
5,059,503	-				+0.2
5,059,536	+		GFF5063	0.13	+0.5
5,059,536	+		GFF5063	0.13	+0.3
5,059,544	-		GFF5063	0.14	-0.8
5,059,547	+		GFF5063	0.14	-0.2
5,059,553	+		GFF5063	0.15	-2.3
5,059,561	-		GFF5063	0.16	+0.5
5,059,561	-		GFF5063	0.16	-1.5
5,059,566	+		GFF5063	0.16	+0.2
5,059,566	+		GFF5063	0.16	+0.3
5,059,572	+		GFF5063	0.17	+1.0
5,059,574	-		GFF5063	0.17	-0.8
5,059,574	-		GFF5063	0.17	-0.3
5,059,574	-		GFF5063	0.17	+0.5
5,059,574	-		GFF5063	0.17	-0.7
5,059,574	-		GFF5063	0.17	-1.1
5,059,598	+		GFF5063	0.20	+0.8
5,059,606	-		GFF5063	0.20	-1.5
5,059,608	+		GFF5063	0.21	-1.1
5,059,608	+		GFF5063	0.21	-1.7
5,059,617	-		GFF5063	0.22	-0.4
5,059,633	+		GFF5063	0.23	+0.9
5,059,638	-		GFF5063	0.24	-0.7
5,059,654	-		GFF5063	0.26	+0.8
5,059,677	+		GFF5063	0.28	+0.6
5,059,677	+		GFF5063	0.28	-1.2
5,059,688	+		GFF5063	0.29	-1.1
5,059,718	+		GFF5063	0.33	-1.2
5,059,718	+		GFF5063	0.33	+0.8
5,059,723	+		GFF5063	0.33	+0.5
5,059,726	-		GFF5063	0.34	-0.7
5,059,726	-		GFF5063	0.34	-0.9
5,059,726	-		GFF5063	0.34	+0.0
5,059,726	-		GFF5063	0.34	+0.2
5,059,741	-		GFF5063	0.35	+0.1
5,059,741	-		GFF5063	0.35	-0.1
5,059,741	-		GFF5063	0.35	+0.0
5,059,743	+		GFF5063	0.36	+1.0
5,059,743	+		GFF5063	0.36	-0.8
5,059,747	+		GFF5063	0.36	-0.7
5,059,751	-		GFF5063	0.36	+0.4
5,059,752	+		GFF5063	0.37	+1.0
5,059,755	-		GFF5063	0.37	-1.3
5,059,762	-		GFF5063	0.38	+1.0
5,059,766	+		GFF5063	0.38	+0.5
5,059,768	-		GFF5063	0.38	-0.7
5,059,774	-		GFF5063	0.39	-0.1
5,059,791	+		GFF5063	0.41	+0.5
5,059,818	+		GFF5063	0.44	-0.1
5,059,823	+		GFF5063	0.44	-0.2
5,059,826	-		GFF5063	0.45	-0.3
5,059,836	-		GFF5063	0.46	-1.2
5,059,842	-		GFF5063	0.46	-0.1
5,059,864	-		GFF5063	0.49	+0.5
5,059,875	+		GFF5063	0.50	+0.7
5,059,875	+		GFF5063	0.50	+0.6
5,059,875	+		GFF5063	0.50	-1.2
5,059,875	+		GFF5063	0.50	+0.2
5,059,875	+		GFF5063	0.50	-1.2
5,059,875	+		GFF5063	0.50	+0.8
5,059,883	-		GFF5063	0.51	+0.8
5,059,888	-		GFF5063	0.51	-1.2
5,059,915	+		GFF5063	0.54	+0.1
5,059,923	-		GFF5063	0.55	+0.2
5,059,931	-		GFF5063	0.56	+1.8
5,059,931	-		GFF5063	0.56	+0.4
5,059,958	+		GFF5063	0.59	+0.5
5,059,958	+		GFF5063	0.59	-1.2
5,059,958	+		GFF5063	0.59	-0.7
5,059,961	-		GFF5063	0.60	+0.0
5,059,966	-		GFF5063	0.60	-1.7
5,059,966	-		GFF5063	0.60	-0.2
5,060,111	+		GFF5063	0.76	+0.1
5,060,111	+		GFF5063	0.76	+0.0
5,060,111	+		GFF5063	0.76	+0.8
5,060,144	+		GFF5063	0.80	+0.3
5,060,144	+		GFF5063	0.80	-1.2
5,060,147	-		GFF5063	0.80	-0.7
5,060,152	-		GFF5063	0.81	+1.1
5,060,162	-		GFF5063	0.82	-0.1
5,060,168	-		GFF5063	0.82	-2.4
5,060,176	+		GFF5063	0.83	-1.8
5,060,180	+		GFF5063	0.84	+1.1
5,060,190	+		GFF5063	0.85	-0.3
5,060,198	-		GFF5063	0.86	+0.3
5,060,219	-		GFF5063	0.88	-0.7
5,060,219	-		GFF5063	0.88	-0.7
5,060,245	-				+1.1
5,060,247	-				-1.2
5,060,298	+				+0.5
5,060,298	+				+0.3
5,060,298	+				-0.7
5,060,306	-				-1.0
5,060,306	-				-0.8
5,060,306	-				-0.7
5,060,306	-				-0.1
5,060,306	-				-1.2
5,060,313	+				-1.2
5,060,321	-				+1.0
5,060,355	-				-1.3
5,060,355	-				+1.0