Strain Fitness in Sphingobium sp. HT1-2 around GFF5007

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,999,668	+		GFF5006	0.32	+1.4
4,999,676	-		GFF5006	0.32	+0.5
4,999,688	+		GFF5006	0.33	+0.9
4,999,727	+		GFF5006	0.36	-0.9
4,999,739	-		GFF5006	0.37	+2.4
4,999,745	+		GFF5006	0.37	+0.2
4,999,747	+		GFF5006	0.37	+1.4
4,999,749	+		GFF5006	0.37	-1.5
4,999,749	+		GFF5006	0.37	+0.5
4,999,749	+		GFF5006	0.37	+2.6
4,999,749	+		GFF5006	0.37	+1.7
4,999,749	+		GFF5006	0.37	+0.4
4,999,749	+		GFF5006	0.37	+1.4
4,999,753	-		GFF5006	0.38	+0.1
4,999,757	-		GFF5006	0.38	-0.0
4,999,757	-		GFF5006	0.38	-0.3
4,999,757	-		GFF5006	0.38	+0.3
4,999,757	-		GFF5006	0.38	+1.4
4,999,757	-		GFF5006	0.38	-0.3
4,999,757	-		GFF5006	0.38	+0.5
4,999,763	-		GFF5006	0.38	+3.4
4,999,783	+		GFF5006	0.40	+1.4
4,999,783	-		GFF5006	0.40	+1.7
4,999,788	+		GFF5006	0.40	-0.7
4,999,831	+		GFF5006	0.43	+0.8
4,999,839	-		GFF5006	0.44	+0.4
4,999,873	-		GFF5006	0.46	+0.1
5,000,093	+		GFF5006	0.61	-1.3
5,000,102	+		GFF5006	0.62	+0.5
5,000,156	+		GFF5006	0.65	-0.0
5,000,173	-		GFF5006	0.67	-1.8
5,000,178	-		GFF5006	0.67	-0.9
5,000,200	-		GFF5006	0.68	-0.2
5,000,202	-		GFF5006	0.69	-0.1
5,000,207	-		GFF5006	0.69	-0.1
5,000,207	-		GFF5006	0.69	-0.1
5,000,217	-		GFF5006	0.70	-0.7
5,000,230	-		GFF5006	0.71	-0.2
5,000,264	-		GFF5006	0.73	-1.4
5,000,323	-		GFF5006	0.77	-0.6
5,000,395	+		GFF5006	0.82	+0.6
5,000,430	+		GFF5006	0.84	-0.1
5,000,431	+		GFF5006	0.84	-0.3
5,000,431	+		GFF5006	0.84	-0.4
5,000,467	-		GFF5006	0.87	-0.1
5,000,470	+		GFF5006	0.87	+1.0
5,000,483	+		GFF5006	0.88	-0.0
5,000,498	+		GFF5006	0.89	+0.4
5,000,498	+		GFF5006	0.89	+2.2
5,000,498	+		GFF5006	0.89	+0.0
5,000,506	-		GFF5006	0.90	+0.6
5,000,508	+		GFF5006	0.90	+0.4
5,000,508	+		GFF5006	0.90	+0.1
5,000,508	+		GFF5006	0.90	-0.3
5,000,516	-				+0.4
5,000,516	-				-0.4
5,000,516	-				-0.2
5,000,516	-				+0.5
5,000,519	+				-0.9
5,000,519	+				+3.1
5,000,534	+				-1.3
5,000,539	+				+0.2
5,000,539	+				+0.3
5,000,546	-				-1.5
5,000,547	-				+2.0
5,000,552	-				+0.8
5,000,568	+				-1.5
5,000,575	+				+1.1
5,000,575	+				+1.4
5,000,575	+				+0.3
5,000,581	+				+2.0
5,000,583	-				-1.1
5,000,600	+				-0.3
5,000,600	+				+0.4
5,000,600	+				+2.3
5,000,600	+				+0.1
5,000,600	+				+1.0
5,000,600	+				+0.7
5,000,600	+				+0.7
5,000,608	-				+0.2
5,000,611	+				-0.9
5,000,619	+				-0.6
5,000,627	+				-0.9
5,000,632	+				-1.2
5,000,632	+				+1.0
5,000,637	+				-1.0
5,000,641	+				+1.4
5,000,650	+				+0.9
5,000,658	+				+1.9
5,000,660	-				+0.5
5,000,666	-				+0.8
5,000,666	-				+3.4
5,000,676	+				+0.9
5,000,681	+				-0.7
5,000,682	+				-0.1
5,000,683	+				+0.5
5,000,686	-				-1.0
5,000,704	-				+0.4
5,000,716	-				+2.0
5,000,717	+				+0.8
5,000,717	+				+0.2
5,000,717	+				-1.0
5,000,717	+				+0.8
5,000,725	-				+1.3
5,000,746	-				+1.9
5,000,769	-				-1.0
5,000,800	-				-1.2
5,000,800	-				-0.9
5,000,800	-				+0.0
5,000,800	-				-0.1
5,000,800	-				-0.6
5,000,856	+		GFF5007	0.13	+0.7
5,000,859	-		GFF5007	0.13	+0.5
5,000,861	+		GFF5007	0.14	-0.2
5,000,873	+		GFF5007	0.14	+0.4
5,000,873	+		GFF5007	0.14	+0.8
5,000,881	-		GFF5007	0.15	-0.1
5,000,881	-		GFF5007	0.15	+0.3
5,000,906	-		GFF5007	0.16	-0.1
5,000,951	-		GFF5007	0.19	+0.8
5,000,958	+		GFF5007	0.20	-0.2
5,000,958	+		GFF5007	0.20	+1.4
5,000,966	-		GFF5007	0.20	-0.4
5,000,966	-		GFF5007	0.20	+1.4
5,000,966	-		GFF5007	0.20	-0.8
5,000,987	-		GFF5007	0.22	-0.4
5,000,987	-		GFF5007	0.22	+0.9
5,001,053	-		GFF5007	0.26	-0.5
5,001,060	+		GFF5007	0.26	+0.9
5,001,063	+		GFF5007	0.27	-0.3
5,001,071	+		GFF5007	0.27	+1.0
5,001,081	-		GFF5007	0.28	-0.6
5,001,101	+		GFF5007	0.29	+1.2
5,001,112	-		GFF5007	0.30	-1.5
5,001,124	+		GFF5007	0.31	+0.4
5,001,136	+		GFF5007	0.31	+1.1
5,001,136	+		GFF5007	0.31	+0.2
5,001,136	+		GFF5007	0.31	+1.0
5,001,136	+		GFF5007	0.31	+0.7
5,001,145	-		GFF5007	0.32	-0.8
5,001,146	+		GFF5007	0.32	+0.0
5,001,149	-		GFF5007	0.32	-0.4
5,001,177	-		GFF5007	0.34	-0.1
5,001,177	-		GFF5007	0.34	+0.6
5,001,179	+		GFF5007	0.34	+1.3
5,001,179	+		GFF5007	0.34	+0.8
5,001,179	+		GFF5007	0.34	+0.5
5,001,187	-		GFF5007	0.35	+0.2
5,001,187	-		GFF5007	0.35	-0.1
5,001,187	-		GFF5007	0.35	+1.0
5,001,187	-		GFF5007	0.35	+0.8
5,001,188	-		GFF5007	0.35	+0.4
5,001,188	-		GFF5007	0.35	+2.0
5,001,203	+		GFF5007	0.36	+0.3
5,001,204	+		GFF5007	0.36	-0.8
5,001,212	-		GFF5007	0.36	-0.3
5,001,236	-		GFF5007	0.38	-0.4
5,001,250	+		GFF5007	0.39	+0.0
5,001,251	+		GFF5007	0.39	+0.8
5,001,258	-		GFF5007	0.39	+0.2
5,001,270	+		GFF5007	0.40	+0.2
5,001,271	+		GFF5007	0.40	+0.2
5,001,279	-		GFF5007	0.41	-0.6
5,001,282	+		GFF5007	0.41	-0.3
5,001,282	+		GFF5007	0.41	-0.7
5,001,282	+		GFF5007	0.41	+1.0
5,001,287	+		GFF5007	0.41	-2.0
5,001,290	-		GFF5007	0.41	-0.7
5,001,300	+		GFF5007	0.42	-0.7
5,001,308	-		GFF5007	0.43	+0.9
5,001,332	+		GFF5007	0.44	+1.4
5,001,332	+		GFF5007	0.44	+1.9
5,001,340	-		GFF5007	0.45	+0.6
5,001,340	-		GFF5007	0.45	+0.7
5,001,341	-		GFF5007	0.45	+0.4
5,001,342	+		GFF5007	0.45	+1.2
5,001,388	-		GFF5007	0.48	+0.9
5,001,448	+		GFF5007	0.52	-0.3
5,001,458	-		GFF5007	0.52	-1.2
5,001,485	+		GFF5007	0.54	+0.1
5,001,485	+		GFF5007	0.54	+2.4
5,001,485	+		GFF5007	0.54	+0.0
5,001,503	+		GFF5007	0.55	+0.4
5,001,503	+		GFF5007	0.55	+0.8
5,001,503	+		GFF5007	0.55	-1.0
5,001,503	+		GFF5007	0.55	-0.9
5,001,503	+		GFF5007	0.55	+0.1
5,001,503	+		GFF5007	0.55	-0.6
5,001,511	-		GFF5007	0.56	+2.4
5,001,511	-		GFF5007	0.56	-0.2
5,001,511	-		GFF5007	0.56	+0.3
5,001,511	-		GFF5007	0.56	-0.3
5,001,511	-		GFF5007	0.56	-0.1
5,001,511	-		GFF5007	0.56	+1.8
5,001,511	-		GFF5007	0.56	+0.7
5,001,521	-		GFF5007	0.56	+0.3
5,001,541	-		GFF5007	0.58	+0.1
5,001,595	-		GFF5007	0.61	+0.4
5,001,612	-		GFF5007	0.62	-0.0
5,001,629	-		GFF5007	0.63	-1.0
5,001,629	-		GFF5007	0.63	-0.1
5,001,629	-		GFF5007	0.63	-0.0
5,001,631	+		GFF5007	0.64	+0.1
5,001,638	-		GFF5007	0.64	+0.5
5,001,646	-		GFF5007	0.65	-0.2
5,001,682	-		GFF5007	0.67	+1.0
5,001,720	+		GFF5007	0.69	+0.5
5,001,720	+		GFF5007	0.69	+0.3
5,001,786	+		GFF5007	0.74	+1.3
5,001,794	-		GFF5007	0.74	+2.6
5,001,806	-		GFF5007	0.75	+1.0
5,001,806	-		GFF5007	0.75	-0.6
5,001,832	+		GFF5007	0.77	+1.4
5,001,832	+		GFF5007	0.77	+1.1
5,001,832	+		GFF5007	0.77	-0.1
5,001,832	+		GFF5007	0.77	+1.0
5,001,832	+		GFF5007	0.77	-1.2
5,001,832	+		GFF5007	0.77	+1.0
5,001,832	+		GFF5007	0.77	+0.4
5,001,832	+		GFF5007	0.77	-1.0
5,001,834	+		GFF5007	0.77	+0.7
5,001,840	-		GFF5007	0.77	+0.2
5,001,840	-		GFF5007	0.77	-0.4
5,001,840	-		GFF5007	0.77	+1.0
5,001,840	-		GFF5007	0.77	-0.7
5,001,840	-		GFF5007	0.77	+0.5
5,001,840	-		GFF5007	0.77	+0.1
5,001,840	-		GFF5007	0.77	+0.7
5,001,840	-		GFF5007	0.77	+1.4
5,001,841	-		GFF5007	0.77	+0.7
5,001,909	-		GFF5007	0.82	+2.0
5,001,909	-		GFF5007	0.82	+0.4
5,001,909	-		GFF5007	0.82	+1.3
5,001,945	+		GFF5007	0.84	+0.5
5,001,953	-		GFF5007	0.84	-1.7
5,001,970	+		GFF5007	0.86	+2.0
5,001,972	+		GFF5007	0.86	+0.3
5,002,014	+		GFF5007	0.88	+0.6
5,002,032	+		GFF5007	0.90	-0.2
5,002,032	+		GFF5007	0.90	+0.0
5,002,040	-				+0.4
5,002,051	+				+0.2
5,002,051	+				-0.0
5,002,054	+				+0.2
5,002,054	+				+2.0
5,002,062	-				+0.3
5,002,062	-				+1.4
5,002,072	-				+1.4
5,002,090	+				+0.1
5,002,098	+				-0.5
5,002,098	+				+0.1
5,002,139	-				-0.9
5,002,153	-				-0.5
5,002,193	-				-1.9
5,002,214	+				-0.2
5,002,214	+				-0.1
5,002,214	+				-0.1
5,002,214	+				+0.5
5,002,231	+				-0.8
5,002,258	+				-0.2
5,002,265	+				-0.5
5,002,266	-				+1.1
5,002,273	-				+0.4
5,002,305	+		GFF5008	0.13	-0.4
5,002,342	+		GFF5008	0.17	+0.8
5,002,342	+		GFF5008	0.17	-0.2
5,002,350	-		GFF5008	0.18	+0.9
5,002,352	+		GFF5008	0.18	+1.4
5,002,355	+		GFF5008	0.18	-0.6
5,002,355	+		GFF5008	0.18	+0.8
5,002,355	+		GFF5008	0.18	-0.1
5,002,355	-		GFF5008	0.18	+2.4
5,002,358	-		GFF5008	0.19	-0.6
5,002,363	-		GFF5008	0.19	+1.5
5,002,368	-		GFF5008	0.20	-0.1
5,002,393	-		GFF5008	0.23	+2.1
5,002,394	+		GFF5008	0.23	-0.7
5,002,435	+		GFF5008	0.27	+0.5
5,002,435	+		GFF5008	0.27	+2.0
5,002,437	+		GFF5008	0.28	-2.2
5,002,443	-		GFF5008	0.28	-0.8
5,002,443	-		GFF5008	0.28	-0.7
5,002,443	-		GFF5008	0.28	+1.9
5,002,460	+		GFF5008	0.30	-0.5
5,002,516	+		GFF5008	0.36	+1.0
5,002,516	+		GFF5008	0.36	-0.5
5,002,516	+		GFF5008	0.36	-0.3
5,002,516	+		GFF5008	0.36	-0.2
5,002,516	+		GFF5008	0.36	-0.6
5,002,524	-		GFF5008	0.37	+0.2
5,002,524	-		GFF5008	0.37	-0.1
5,002,531	+		GFF5008	0.38	-1.0
5,002,540	-		GFF5008	0.39	+0.4
5,002,549	+		GFF5008	0.40	-0.2
5,002,549	+		GFF5008	0.40	-0.0
5,002,553	+		GFF5008	0.40	-0.3
5,002,553	+		GFF5008	0.40	-0.6
5,002,557	-		GFF5008	0.41	-0.1
5,002,561	-		GFF5008	0.41	-0.2
5,002,561	-		GFF5008	0.41	+0.2
5,002,561	-		GFF5008	0.41	+0.3
5,002,571	+		GFF5008	0.42	+0.2
5,002,592	-		GFF5008	0.45	-0.8
5,002,595	-		GFF5008	0.45	-0.1
5,002,617	-		GFF5008	0.48	+0.4
5,002,626	-		GFF5008	0.49	-0.2
5,002,626	-		GFF5008	0.49	+0.5
5,002,645	-		GFF5008	0.51	+0.2
5,002,666	-		GFF5008	0.53	+0.0
5,002,702	+		GFF5008	0.57	+0.2
5,002,961	+		GFF5008	0.86	+1.0
5,002,962	+		GFF5008	0.86	+1.0
5,002,967	+		GFF5008	0.86	+3.9
5,002,969	-		GFF5008	0.86	-0.3
5,002,969	-		GFF5008	0.86	+0.2
5,002,969	-		GFF5008	0.86	-0.2
5,002,969	-		GFF5008	0.86	+1.6
5,002,969	-		GFF5008	0.86	-1.3
5,003,038	-				-0.3
5,003,138	+				+0.3
5,003,169	+				+0.0