Strain Fitness in Sphingobium sp. HT1-2 around GFF4840

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,825,479	-		GFF4839	0.41	+1.5
4,825,483	-		GFF4839	0.41	+0.4
4,825,485	+		GFF4839	0.41	+0.1
4,825,485	+		GFF4839	0.41	+0.5
4,825,490	+		GFF4839	0.41	-0.7
4,825,498	-		GFF4839	0.42	-2.6
4,825,498	-		GFF4839	0.42	+0.4
4,825,504	+		GFF4839	0.43	-1.5
4,825,504	+		GFF4839	0.43	-0.2
4,825,512	-		GFF4839	0.43	+1.4
4,825,512	-		GFF4839	0.43	+0.7
4,825,522	-		GFF4839	0.44	+0.5
4,825,541	-		GFF4839	0.46	+0.5
4,825,548	+		GFF4839	0.47	+0.8
4,825,548	+		GFF4839	0.47	-1.2
4,825,548	+		GFF4839	0.47	-1.3
4,825,556	-		GFF4839	0.47	+0.4
4,825,561	+		GFF4839	0.48	+0.3
4,825,566	+		GFF4839	0.48	-0.0
4,825,566	+		GFF4839	0.48	-1.4
4,825,566	+		GFF4839	0.48	+0.5
4,825,568	+		GFF4839	0.48	+1.0
4,825,574	-		GFF4839	0.49	-0.9
4,825,604	-		GFF4839	0.51	-0.7
4,825,606	+		GFF4839	0.52	-0.0
4,825,623	+		GFF4839	0.53	+0.2
4,825,623	+		GFF4839	0.53	-0.3
4,825,631	-		GFF4839	0.54	+2.2
4,825,647	-		GFF4839	0.55	+0.1
4,825,649	+		GFF4839	0.55	-0.3
4,825,649	+		GFF4839	0.55	-0.2
4,825,649	+		GFF4839	0.55	-0.6
4,825,657	-		GFF4839	0.56	+0.0
4,825,667	-		GFF4839	0.57	-0.8
4,825,667	-		GFF4839	0.57	+1.2
4,825,686	+		GFF4839	0.59	-0.8
4,825,686	-		GFF4839	0.59	-0.4
4,825,688	+		GFF4839	0.59	-1.1
4,825,691	+		GFF4839	0.59	-1.2
4,825,694	-		GFF4839	0.59	-0.3
4,825,694	-		GFF4839	0.59	-0.8
4,825,738	+		GFF4839	0.63	-0.7
4,825,738	-		GFF4839	0.63	-0.5
4,825,740	+		GFF4839	0.63	+0.1
4,825,740	+		GFF4839	0.63	+0.4
4,825,748	-		GFF4839	0.64	-0.4
4,825,748	-		GFF4839	0.64	+0.4
4,825,754	-		GFF4839	0.65	-1.1
4,825,772	-		GFF4839	0.66	-0.2
4,825,788	+		GFF4839	0.68	-0.9
4,825,797	+		GFF4839	0.68	+1.4
4,825,797	+		GFF4839	0.68	-0.7
4,825,805	-		GFF4839	0.69	+0.2
4,825,809	+		GFF4839	0.69	+0.2
4,825,809	+		GFF4839	0.69	-0.4
4,825,809	+		GFF4839	0.69	-1.0
4,825,809	+		GFF4839	0.69	-1.8
4,825,809	+		GFF4839	0.69	-1.6
4,825,809	+		GFF4839	0.69	-1.0
4,825,809	+		GFF4839	0.69	+1.4
4,825,817	-		GFF4839	0.70	+0.6
4,825,817	-		GFF4839	0.70	-0.6
4,825,817	-		GFF4839	0.70	-0.6
4,825,817	-		GFF4839	0.70	+0.1
4,825,817	-		GFF4839	0.70	-1.4
4,825,817	-		GFF4839	0.70	-0.7
4,825,817	-		GFF4839	0.70	-0.9
4,825,817	-		GFF4839	0.70	-1.2
4,825,817	-		GFF4839	0.70	+0.7
4,825,817	-		GFF4839	0.70	+0.3
4,825,828	+		GFF4839	0.71	-1.2
4,825,836	-		GFF4839	0.72	-0.5
4,825,836	-		GFF4839	0.72	+0.6
4,825,836	-		GFF4839	0.72	-1.4
4,825,836	-		GFF4839	0.72	+0.8
4,825,855	-		GFF4839	0.74	-0.0
4,825,856	+		GFF4839	0.74	-1.0
4,825,864	-		GFF4839	0.74	-0.4
4,825,897	+		GFF4839	0.77	+0.1
4,825,905	-		GFF4839	0.78	-0.4
4,825,946	-		GFF4839	0.81	+0.4
4,825,984	+		GFF4839	0.85	+0.5
4,825,990	+		GFF4839	0.85	+1.0
4,825,998	-		GFF4839	0.86	-2.9
4,826,000	+		GFF4839	0.86	-0.0
4,826,000	+		GFF4839	0.86	-1.8
4,826,000	+		GFF4839	0.86	-0.9
4,826,010	+		GFF4839	0.87	-0.0
4,826,018	+		GFF4839	0.88	-0.5
4,826,018	-		GFF4839	0.88	-1.2
4,826,052	-				-1.5
4,826,061	-				-0.5
4,826,144	-				+0.5
4,826,147	-				-1.7
4,826,186	-				+0.4
4,826,186	-				-0.6
4,826,212	-				-0.9
4,826,219	-				+0.4
4,826,230	+				-0.5
4,826,238	+				-0.4
4,826,238	-				+1.2
4,826,245	-				-0.7
4,826,247	+				-1.6
4,826,247	+				+1.5
4,826,280	-				-1.3
4,826,283	+				-2.0
4,826,291	+				+1.1
4,826,291	+				-1.5
4,826,291	+				+1.1
4,826,291	+				-1.0
4,826,299	-				-0.5
4,826,299	-				-0.5
4,826,299	-				+1.5
4,826,299	-				+0.1
4,826,347	+				+1.0
4,826,347	+				-2.0
4,826,355	-				-0.1
4,826,355	-				-0.6
4,826,355	-				-0.6
4,826,365	-				-0.6
4,826,421	-				+1.0
4,826,438	+				+0.4
4,826,441	-				-0.2
4,826,446	+				+0.1
4,826,446	+				-0.8
4,826,446	+				+0.2
4,826,446	+				-0.1
4,826,453	+				+1.3
4,826,453	+				-0.6
4,826,454	-				+0.1
4,826,454	-				+0.2
4,826,454	-				-1.3
4,826,454	-				-2.1
4,826,454	-				+0.1
4,826,454	-				+0.4
4,826,470	+				+0.2
4,826,470	+				-0.3
4,826,483	+				-0.0
4,826,491	-				-1.4
4,826,503	-		GFF4840	0.12	-1.0
4,826,503	-		GFF4840	0.12	-0.0
4,826,503	-		GFF4840	0.12	-1.0
4,826,508	+		GFF4840	0.13	+0.4
4,826,565	+		GFF4840	0.27	+1.2
4,826,573	-		GFF4840	0.29	-0.4
4,826,581	+		GFF4840	0.31	-0.9
4,826,583	-		GFF4840	0.31	+0.1
4,826,589	-		GFF4840	0.33	-1.8
4,826,615	+		GFF4840	0.39	+0.4
4,826,622	+		GFF4840	0.41	-0.7
4,826,635	-		GFF4840	0.44	-0.5
4,826,667	-		GFF4840	0.52	-0.9
4,826,684	+		GFF4840	0.56	-0.8
4,826,684	+		GFF4840	0.56	-2.0
4,826,684	+		GFF4840	0.56	-0.8
4,826,684	+		GFF4840	0.56	-0.3
4,826,692	-		GFF4840	0.58	+1.1
4,826,692	-		GFF4840	0.58	-0.4
4,826,692	-		GFF4840	0.58	+1.0
4,826,729	+		GFF4840	0.67	-3.1
4,826,729	+		GFF4840	0.67	+2.2
4,826,737	-		GFF4840	0.69	-0.6
4,826,737	-		GFF4840	0.69	-0.7
4,826,748	+		GFF4840	0.71	+0.6
4,826,752	-		GFF4840	0.72	+1.0
4,826,754	-		GFF4840	0.73	+0.6
4,826,754	-		GFF4840	0.73	+0.2
4,826,777	+		GFF4840	0.78	+0.2
4,826,801	+		GFF4840	0.84	+1.0
4,826,836	-				+0.4
4,826,848	+				-1.1
4,826,848	+				+0.1
4,826,848	+				-0.3
4,826,849	-				-0.6
4,826,850	+				+0.9
4,826,850	+				-0.4
4,826,856	-				-0.1
4,826,867	+				-0.6
4,826,874	+				-1.7
4,826,875	-				-0.7
4,826,880	-				-1.0
4,826,888	+				-1.6
4,826,923	-				-0.2
4,826,931	-				-1.4
4,826,937	+				-0.2
4,826,948	-				-1.4
4,826,959	+				+1.6
4,826,960	-				-1.7
4,826,960	-				+0.4
4,826,960	-				-0.0
4,826,992	+				+0.0
4,827,032	+		GFF4841	0.19	-0.7
4,827,040	-		GFF4841	0.22	+0.3
4,827,081	-		GFF4841	0.36	+0.5
4,827,089	+		GFF4841	0.38	-0.2
4,827,092	+		GFF4841	0.39	-0.9
4,827,092	+		GFF4841	0.39	+0.3
4,827,095	-		GFF4841	0.40	+1.3
4,827,095	-		GFF4841	0.40	+0.3
4,827,097	+		GFF4841	0.41	-1.1
4,827,097	+		GFF4841	0.41	+1.7
4,827,097	+		GFF4841	0.41	-0.1
4,827,100	-		GFF4841	0.42	-0.8
4,827,105	-		GFF4841	0.44	+0.4
4,827,108	+		GFF4841	0.45	-0.1
4,827,125	+		GFF4841	0.51	+2.0
4,827,133	-		GFF4841	0.53	-1.8
4,827,133	-		GFF4841	0.53	-0.7
4,827,133	-		GFF4841	0.53	-0.6
4,827,156	-		GFF4841	0.61	-0.8
4,827,172	+		GFF4841	0.67	-0.6
4,827,180	-		GFF4841	0.69	-1.3
4,827,180	-		GFF4841	0.69	-0.5
4,827,193	-		GFF4841	0.74	+1.7
4,827,223	+		GFF4841	0.84	-0.6
4,827,223	+		GFF4841	0.84	-1.8
4,827,231	-		GFF4841	0.87	+1.9
4,827,243	-				+0.2
4,827,244	+				+0.0
4,827,244	+				+0.5
4,827,244	+				+0.2
4,827,244	+				-0.4
4,827,252	-				-0.4
4,827,252	-				-1.3
4,827,252	-				+0.1
4,827,252	-				-0.4
4,827,252	-				+0.5
4,827,252	-				-0.0
4,827,252	-				-0.2
4,827,252	-				-0.6
4,827,252	-				-0.8
4,827,252	-				-1.7
4,827,252	-				+0.4
4,827,262	-				-0.3
4,827,262	-				+0.0
4,827,312	+				-0.6
4,827,318	-				-0.8
4,827,326	+				-0.9
4,827,326	+				-1.4
4,827,357	-				-0.1
4,827,357	-				-0.3
4,827,357	-				-2.6
4,827,386	-				-0.7
4,827,421	+				-1.1
4,827,430	+				-0.6
4,827,490	+		GFF4842	0.15	-1.1
4,827,500	+		GFF4842	0.16	-0.9
4,827,500	+		GFF4842	0.16	-0.7
4,827,500	+		GFF4842	0.16	-0.9
4,827,500	+		GFF4842	0.16	-0.7
4,827,500	+		GFF4842	0.16	+0.3
4,827,508	-		GFF4842	0.17	-0.3
4,827,508	-		GFF4842	0.17	+0.3
4,827,508	-		GFF4842	0.17	-0.7
4,827,508	-		GFF4842	0.17	-0.4
4,827,508	-		GFF4842	0.17	-1.3
4,827,512	+		GFF4842	0.18	-0.7
4,827,539	-		GFF4842	0.21	+0.2
4,827,558	+		GFF4842	0.24	+0.5
4,827,558	+		GFF4842	0.24	+0.3
4,827,567	-		GFF4842	0.25	-0.4
4,827,573	+		GFF4842	0.26	-1.2
4,827,579	+		GFF4842	0.27	+0.5
4,827,579	+		GFF4842	0.27	-1.1
4,827,587	-		GFF4842	0.28	-0.4
4,827,587	-		GFF4842	0.28	-0.3
4,827,598	+		GFF4842	0.29	-0.5
4,827,598	+		GFF4842	0.29	+1.1
4,827,605	+		GFF4842	0.30	-0.2
4,827,605	+		GFF4842	0.30	+0.2
4,827,606	-		GFF4842	0.30	-0.9
4,827,613	-		GFF4842	0.31	-0.2
4,827,613	-		GFF4842	0.31	-0.2
4,827,647	+		GFF4842	0.36	-0.6
4,827,657	+		GFF4842	0.37	-0.9
4,827,657	+		GFF4842	0.37	-0.5
4,827,675	+		GFF4842	0.40	-0.4
4,827,714	+		GFF4842	0.45	-1.5
4,827,714	+		GFF4842	0.45	-1.6
4,827,722	-		GFF4842	0.46	-0.5
4,827,722	-		GFF4842	0.46	-1.0
4,827,727	-		GFF4842	0.47	+0.6
4,827,734	+		GFF4842	0.48	+0.4
4,827,742	-		GFF4842	0.49	-1.2
4,827,750	-		GFF4842	0.50	-0.9
4,827,755	+		GFF4842	0.51	+0.5
4,827,770	+		GFF4842	0.53	-0.7
4,827,783	-		GFF4842	0.54	-2.4
4,827,791	-		GFF4842	0.55	-0.8
4,827,801	-		GFF4842	0.57	+0.0
4,827,802	+		GFF4842	0.57	+0.6
4,827,802	+		GFF4842	0.57	+0.8
4,827,807	+		GFF4842	0.58	-0.7
4,827,807	+		GFF4842	0.58	+1.0
4,827,807	+		GFF4842	0.58	+0.2
4,827,807	+		GFF4842	0.58	-0.5
4,827,807	+		GFF4842	0.58	-0.8
4,827,815	-		GFF4842	0.59	-1.7
4,827,830	+		GFF4842	0.61	+0.3
4,827,839	-		GFF4842	0.62	-1.6
4,827,857	-		GFF4842	0.64	+0.7
4,827,862	-		GFF4842	0.65	-1.2