Strain Fitness in Sphingobium sp. HT1-2 around GFF4811

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,800,058	+				+0.6
4,800,058	+				-0.6
4,800,058	+				-0.5
4,800,079	-				+0.7
4,800,082	+				+0.3
4,800,082	+				+1.3
4,800,090	-				-1.7
4,800,096	-				+0.3
4,800,122	-				-1.0
4,800,126	+				-0.8
4,800,126	+				-0.7
4,800,126	+				+1.0
4,800,137	-				+0.2
4,800,159	+		GFF4810	0.12	+0.2
4,800,167	-		GFF4810	0.13	+1.2
4,800,167	-		GFF4810	0.13	-0.1
4,800,175	-		GFF4810	0.13	-0.7
4,800,178	+		GFF4810	0.14	-1.4
4,800,216	+		GFF4810	0.18	+0.6
4,800,221	+		GFF4810	0.19	-0.0
4,800,222	-		GFF4810	0.19	-0.7
4,800,224	-		GFF4810	0.19	-0.5
4,800,226	+		GFF4810	0.19	+0.2
4,800,226	+		GFF4810	0.19	-0.9
4,800,234	+		GFF4810	0.20	-1.3
4,800,239	+		GFF4810	0.21	-0.3
4,800,239	+		GFF4810	0.21	-1.5
4,800,247	-		GFF4810	0.21	-1.2
4,800,276	-		GFF4810	0.25	+0.5
4,800,280	-		GFF4810	0.25	-0.4
4,800,289	-		GFF4810	0.26	-0.0
4,800,313	+		GFF4810	0.29	-1.2
4,800,314	-		GFF4810	0.29	-0.9
4,800,318	+		GFF4810	0.29	-1.5
4,800,346	+		GFF4810	0.33	-0.9
4,800,354	-		GFF4810	0.33	-0.7
4,800,354	-		GFF4810	0.33	-0.8
4,800,366	+		GFF4810	0.35	-1.2
4,800,373	+		GFF4810	0.36	-0.2
4,800,373	+		GFF4810	0.36	-0.7
4,800,373	+		GFF4810	0.36	+0.3
4,800,373	+		GFF4810	0.36	+0.3
4,800,376	-		GFF4810	0.36	-1.0
4,800,381	-		GFF4810	0.36	+1.0
4,800,381	-		GFF4810	0.36	+2.0
4,800,381	-		GFF4810	0.36	+0.5
4,800,381	-		GFF4810	0.36	-1.9
4,800,381	-		GFF4810	0.36	-1.6
4,800,381	-		GFF4810	0.36	+0.9
4,800,381	-		GFF4810	0.36	-1.0
4,800,384	+		GFF4810	0.37	-0.9
4,800,394	+		GFF4810	0.38	-1.4
4,800,394	-		GFF4810	0.38	-0.8
4,800,418	+		GFF4810	0.41	-0.9
4,800,425	+		GFF4810	0.41	-1.0
4,800,433	-		GFF4810	0.42	-0.8
4,800,435	+		GFF4810	0.43	-0.8
4,800,435	+		GFF4810	0.43	-0.9
4,800,435	+		GFF4810	0.43	+0.9
4,800,435	+		GFF4810	0.43	-0.6
4,800,440	+		GFF4810	0.43	-0.7
4,800,443	-		GFF4810	0.43	-2.0
4,800,443	-		GFF4810	0.43	+0.2
4,800,443	-		GFF4810	0.43	-1.0
4,800,443	-		GFF4810	0.43	-0.4
4,800,443	-		GFF4810	0.43	-0.0
4,800,443	-		GFF4810	0.43	+0.1
4,800,443	-		GFF4810	0.43	+0.3
4,800,453	-		GFF4810	0.45	-0.6
4,800,471	-		GFF4810	0.47	-1.8
4,800,493	+		GFF4810	0.49	-0.8
4,800,500	+		GFF4810	0.50	-1.0
4,800,500	+		GFF4810	0.50	-1.8
4,800,500	+		GFF4810	0.50	+0.2
4,800,543	+		GFF4810	0.55	-0.1
4,800,585	-		GFF4810	0.59	+0.8
4,800,591	+		GFF4810	0.60	-0.7
4,800,601	+		GFF4810	0.61	-2.2
4,800,626	+		GFF4810	0.64	-0.7
4,800,635	+		GFF4810	0.65	-0.4
4,800,635	+		GFF4810	0.65	+0.2
4,800,635	+		GFF4810	0.65	-0.7
4,800,636	-		GFF4810	0.65	+0.2
4,800,637	+		GFF4810	0.65	-1.0
4,800,645	+		GFF4810	0.66	-1.7
4,800,650	+		GFF4810	0.67	-1.0
4,800,650	+		GFF4810	0.67	-1.0
4,800,653	-		GFF4810	0.67	-1.0
4,800,653	-		GFF4810	0.67	-0.7
4,800,669	+		GFF4810	0.69	-1.6
4,800,677	-		GFF4810	0.70	-1.0
4,800,685	-		GFF4810	0.70	-0.3
4,800,724	+		GFF4810	0.75	-0.8
4,800,744	-		GFF4810	0.77	-0.4
4,800,747	+		GFF4810	0.77	-1.2
4,800,753	+		GFF4810	0.78	-0.4
4,800,783	-		GFF4810	0.81	+0.3
4,800,826	-		GFF4810	0.86	-0.4
4,800,831	-		GFF4810	0.87	-1.5
4,800,831	-		GFF4810	0.87	-1.6
4,800,840	+		GFF4810	0.88	-0.7
4,800,840	+		GFF4810	0.88	+0.2
4,800,845	+		GFF4810	0.88	-1.4
4,800,853	-		GFF4810	0.89	-1.0
4,800,853	-		GFF4810	0.89	+0.7
4,800,873	-				-2.1
4,800,873	-				-0.2
4,800,875	+				-1.4
4,800,883	-				-0.7
4,800,883	-				-1.4
4,800,883	-				-1.7
4,800,900	+				-0.1
4,800,904	+				-0.6
4,800,904	+				+0.5
4,800,904	+				+0.6
4,800,912	-				-1.8
4,800,917	+				+0.5
4,800,929	-				-0.6
4,800,940	-				+0.0
4,800,944	+				+0.1
4,800,949	+				-1.4
4,800,952	-				-1.1
4,800,968	-				+1.0
4,800,970	+				+0.0
4,800,971	-				-0.9
4,800,973	-				+0.1
4,800,973	-				+1.2
4,800,973	-				-1.1
4,800,978	-				-1.1
4,800,980	+				-0.7
4,801,023	+				+0.7
4,801,031	-				-1.2
4,801,031	-				-0.9
4,801,031	-				+0.2
4,801,031	-				-0.8
4,801,045	-				-0.1
4,801,046	-				-0.3
4,801,074	-		GFF4811	0.10	-0.9
4,801,124	+		GFF4811	0.38	-0.8
4,801,124	+		GFF4811	0.38	-1.2
4,801,132	-		GFF4811	0.43	-1.7
4,801,133	-		GFF4811	0.44	-0.2
4,801,143	-		GFF4811	0.49	+0.7
4,801,153	+		GFF4811	0.55	-0.8
4,801,172	+		GFF4811	0.66	-0.4
4,801,194	-		GFF4811	0.78	+0.4
4,801,207	+		GFF4811	0.85	-1.0
4,801,207	+		GFF4811	0.85	-1.7
4,801,215	-				-0.9
4,801,215	-				-0.1
4,801,220	-				-1.4
4,801,230	+				+0.6
4,801,237	-				+0.2
4,801,239	+				-1.1
4,801,245	-		GFF4812	0.10	-0.4
4,801,247	-		GFF4812	0.12	-1.9
4,801,254	+		GFF4812	0.16	-1.5
4,801,254	+		GFF4812	0.16	-0.4
4,801,262	-		GFF4812	0.22	+0.1
4,801,262	-		GFF4812	0.22	+0.0
4,801,267	-		GFF4812	0.25	-1.6
4,801,277	+		GFF4812	0.31	+0.3
4,801,277	+		GFF4812	0.31	-0.1
4,801,285	-		GFF4812	0.37	-0.1
4,801,286	-		GFF4812	0.37	-0.1
4,801,301	-		GFF4812	0.47	-0.6
4,801,326	+		GFF4812	0.63	-2.5
4,801,334	-		GFF4812	0.69	-1.2
4,801,344	-		GFF4812	0.75	-0.5
4,801,360	-		GFF4812	0.86	+0.1
4,801,374	+				-0.6
4,801,376	+				-0.1
4,801,384	+				-0.8
4,801,419	+				+0.2
4,801,422	+				+0.2
4,801,427	-				-0.3
4,801,482	+				+0.9
4,801,520	+				-1.9
4,801,520	+				-1.5
4,801,520	+				+1.1
4,801,520	+				-0.7
4,801,523	-				-1.5
4,801,528	-				+1.4
4,801,528	-				-0.6
4,801,528	-				+1.0
4,801,528	-				-1.6
4,801,528	-				-1.1
4,801,528	-				-1.5
4,801,535	+				-2.2
4,801,539	-				-1.2
4,801,565	-				+1.4
4,801,568	+				-0.8
4,801,571	-				+0.0
4,801,579	-				-1.7
4,801,630	-				+0.0
4,801,670	+				-0.8
4,801,679	+				+0.7
4,801,689	+				-1.4
4,801,700	+				-1.1
4,801,700	+				-0.2
4,801,706	-				+1.1
4,801,706	-				-0.8
4,801,708	-				-0.6
4,801,714	-				-0.6
4,801,776	+				-1.7
4,801,808	+		GFF4813	0.20	-0.6
4,801,808	+		GFF4813	0.20	-0.6
4,801,824	+		GFF4813	0.31	-1.7
4,801,838	-		GFF4813	0.41	-0.2
4,801,844	+		GFF4813	0.45	+0.1
4,801,844	+		GFF4813	0.45	+0.2
4,801,844	+		GFF4813	0.45	-0.4
4,801,844	+		GFF4813	0.45	+0.4
4,801,844	+		GFF4813	0.45	-1.4
4,801,844	+		GFF4813	0.45	+0.4
4,801,844	+		GFF4813	0.45	-1.5
4,801,844	+		GFF4813	0.45	-1.1
4,801,849	+		GFF4813	0.48	-1.0
4,801,852	-		GFF4813	0.50	-1.7
4,801,852	-		GFF4813	0.50	+0.0
4,801,854	+		GFF4813	0.52	+0.4
4,801,854	+		GFF4813	0.52	+0.2
4,801,854	+		GFF4813	0.52	-1.4
4,801,917	-				+0.2
4,801,922	-				-0.7
4,801,923	+				-1.0
4,801,929	-				-0.5
4,801,929	-				-1.3
4,801,931	-				+1.2
4,801,953	+				+0.1
4,801,955	+				-0.6
4,801,961	-				-0.6
4,801,999	+		GFF4814	0.14	-1.1
4,802,004	+		GFF4814	0.17	+0.1
4,802,012	-		GFF4814	0.21	+0.1
4,802,014	+		GFF4814	0.22	-1.8
4,802,014	+		GFF4814	0.22	-0.4
4,802,022	-		GFF4814	0.26	-0.6
4,802,039	-		GFF4814	0.35	-0.7
4,802,057	+		GFF4814	0.44	-0.9
4,802,065	-		GFF4814	0.48	-0.8
4,802,130	+		GFF4814	0.82	+0.3
4,802,160	-				-0.3
4,802,167	+				-0.7
4,802,168	+				-2.2
4,802,175	-				-3.0
4,802,217	+				-1.1
4,802,217	+				-0.3
4,802,217	+				+0.1
4,802,217	+				+0.6
4,802,225	-				-0.9
4,802,225	-				+0.6