Strain Fitness in Sphingobium sp. HT1-2 around GFF4673

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,667,974	-				+0.2
4,668,119	+				+1.2
4,668,119	+				-0.3
4,668,121	+				-1.0
4,668,143	+				+2.0
4,668,148	+				+0.9
4,668,151	-				-0.3
4,668,156	-				+0.8
4,668,182	+				-1.1
4,668,189	+		GFF4672	0.10	-2.1
4,668,218	-		GFF4672	0.14	+1.1
4,668,218	-		GFF4672	0.14	-1.0
4,668,237	-		GFF4672	0.16	+0.5
4,668,262	+		GFF4672	0.19	-0.4
4,668,277	+		GFF4672	0.21	+1.0
4,668,316	-		GFF4672	0.25	+0.8
4,668,316	-		GFF4672	0.25	+0.0
4,668,327	-		GFF4672	0.26	+1.8
4,668,343	-		GFF4672	0.28	+0.7
4,668,362	-		GFF4672	0.30	+0.2
4,668,367	-		GFF4672	0.31	+0.6
4,668,372	+		GFF4672	0.32	-0.5
4,668,412	-		GFF4672	0.36	-0.3
4,668,434	+		GFF4672	0.39	-1.0
4,668,434	+		GFF4672	0.39	+1.0
4,668,434	+		GFF4672	0.39	-1.3
4,668,434	+		GFF4672	0.39	+1.7
4,668,434	+		GFF4672	0.39	-0.2
4,668,434	+		GFF4672	0.39	+0.9
4,668,434	+		GFF4672	0.39	+0.7
4,668,434	+		GFF4672	0.39	+0.8
4,668,434	+		GFF4672	0.39	-0.4
4,668,434	+		GFF4672	0.39	-1.1
4,668,434	+		GFF4672	0.39	+0.0
4,668,434	+		GFF4672	0.39	-0.3
4,668,434	+		GFF4672	0.39	+0.4
4,668,434	+		GFF4672	0.39	+1.3
4,668,434	+		GFF4672	0.39	+0.1
4,668,434	+		GFF4672	0.39	+1.7
4,668,434	+		GFF4672	0.39	-0.2
4,668,434	+		GFF4672	0.39	+0.5
4,668,434	+		GFF4672	0.39	-0.1
4,668,434	+		GFF4672	0.39	-0.3
4,668,434	+		GFF4672	0.39	-0.5
4,668,434	+		GFF4672	0.39	+1.1
4,668,434	+		GFF4672	0.39	+1.0
4,668,434	+		GFF4672	0.39	+0.4
4,668,434	+		GFF4672	0.39	+0.7
4,668,434	+		GFF4672	0.39	-0.0
4,668,434	+		GFF4672	0.39	+0.2
4,668,434	+		GFF4672	0.39	-0.5
4,668,434	+		GFF4672	0.39	-1.1
4,668,434	+		GFF4672	0.39	+1.8
4,668,434	+		GFF4672	0.39	-1.4
4,668,442	-		GFF4672	0.40	+2.2
4,668,442	-		GFF4672	0.40	+1.4
4,668,442	-		GFF4672	0.40	+0.8
4,668,442	-		GFF4672	0.40	+0.9
4,668,442	-		GFF4672	0.40	+0.1
4,668,442	-		GFF4672	0.40	+0.0
4,668,442	-		GFF4672	0.40	+1.2
4,668,442	-		GFF4672	0.40	-0.5
4,668,442	-		GFF4672	0.40	-1.1
4,668,442	-		GFF4672	0.40	+2.4
4,668,442	-		GFF4672	0.40	-0.7
4,668,442	-		GFF4672	0.40	+0.8
4,668,442	-		GFF4672	0.40	-0.2
4,668,442	-		GFF4672	0.40	+0.2
4,668,442	-		GFF4672	0.40	+1.1
4,668,442	-		GFF4672	0.40	+0.1
4,668,442	-		GFF4672	0.40	+1.4
4,668,442	-		GFF4672	0.40	+1.8
4,668,442	-		GFF4672	0.40	-0.1
4,668,442	-		GFF4672	0.40	+1.3
4,668,442	-		GFF4672	0.40	+0.4
4,668,475	+		GFF4672	0.44	+0.8
4,668,478	-		GFF4672	0.44	+1.4
4,668,505	-		GFF4672	0.47	+0.4
4,668,510	-		GFF4672	0.48	+0.6
4,668,518	-		GFF4672	0.49	+0.3
4,668,523	-		GFF4672	0.49	+0.4
4,668,528	-		GFF4672	0.50	+0.5
4,668,528	-		GFF4672	0.50	+1.0
4,668,552	+		GFF4672	0.53	-0.1
4,668,565	-		GFF4672	0.54	-0.2
4,668,626	+		GFF4672	0.61	+1.4
4,668,677	+		GFF4672	0.67	+0.6
4,668,683	+		GFF4672	0.68	-1.8
4,668,695	+		GFF4672	0.69	+0.0
4,668,703	-		GFF4672	0.70	-0.8
4,668,706	-		GFF4672	0.71	-0.2
4,668,718	-		GFF4672	0.72	-0.2
4,668,718	-		GFF4672	0.72	-0.7
4,668,718	-		GFF4672	0.72	+1.6
4,668,718	-		GFF4672	0.72	+1.0
4,668,740	+		GFF4672	0.74	+0.7
4,668,740	+		GFF4672	0.74	+0.6
4,668,767	-		GFF4672	0.78	+0.1
4,668,820	+		GFF4672	0.84	+0.8
4,668,822	+		GFF4672	0.84	+0.0
4,668,822	+		GFF4672	0.84	-0.8
4,668,828	-		GFF4672	0.85	-0.1
4,668,830	-		GFF4672	0.85	+1.4
4,668,830	-		GFF4672	0.85	-0.1
4,668,830	-		GFF4672	0.85	+0.7
4,668,830	-		GFF4672	0.85	+0.0
4,668,830	-		GFF4672	0.85	-0.4
4,668,830	-		GFF4672	0.85	+0.9
4,668,839	-		GFF4672	0.86	+1.6
4,668,843	-		GFF4672	0.86	+0.4
4,668,852	+		GFF4672	0.88	-0.1
4,668,861	+		GFF4672	0.89	-0.9
4,668,866	+		GFF4672	0.89	+1.4
4,668,866	+		GFF4672	0.89	+0.0
4,668,866	+		GFF4672	0.89	+0.2
4,668,866	+		GFF4672	0.89	+0.6
4,668,866	+		GFF4672	0.89	+0.8
4,668,866	+		GFF4672	0.89	+1.8
4,668,866	+		GFF4672	0.89	-1.8
4,668,866	+		GFF4672	0.89	-0.2
4,668,869	-		GFF4672	0.90	+0.2
4,668,871	+		GFF4672	0.90	+0.6
4,668,871	+		GFF4672	0.90	+1.2
4,668,871	+		GFF4672	0.90	+0.0
4,668,871	+		GFF4672	0.90	+1.6
4,668,871	+		GFF4672	0.90	-1.8
4,668,871	+		GFF4672	0.90	+1.6
4,668,871	+		GFF4672	0.90	+1.1
4,668,871	+		GFF4672	0.90	+0.2
4,668,871	+		GFF4672	0.90	+0.8
4,668,871	+		GFF4672	0.90	-0.1
4,668,871	+		GFF4672	0.90	+0.9
4,668,871	+		GFF4672	0.90	-1.0
4,668,871	+		GFF4672	0.90	+1.0
4,668,871	+		GFF4672	0.90	-0.3
4,668,871	+		GFF4672	0.90	+1.2
4,668,871	+		GFF4672	0.90	-0.2
4,668,871	+		GFF4672	0.90	+1.6
4,668,874	-				-1.5
4,668,874	-				+1.4
4,668,874	-				-0.2
4,668,874	-				+0.0
4,668,874	-				-0.6
4,668,874	-				+0.2
4,668,876	+				-1.1
4,668,879	-				+2.1
4,668,879	-				-1.7
4,668,879	-				-1.1
4,668,879	-				+1.4
4,668,879	-				-0.8
4,668,879	-				-1.6
4,668,879	-				+0.7
4,668,879	-				+0.7
4,668,879	-				+0.1
4,668,879	-				+0.7
4,668,879	-				-0.0
4,668,879	-				+1.4
4,668,879	-				-0.8
4,668,879	-				-0.1
4,668,879	-				-0.1
4,668,879	-				+0.1
4,668,879	-				+0.4
4,668,879	-				-2.1
4,668,879	-				-0.2
4,668,884	+				+0.8
4,668,884	-				+2.0
4,668,966	-				-0.5
4,668,983	+				-0.4
4,668,983	+				+0.6
4,668,983	+				+0.0
4,669,002	+				-0.1
4,669,004	+				+0.1
4,669,010	-				+2.4
4,669,019	+				-0.5
4,669,027	-				-0.1
4,669,030	-				+1.0
4,669,072	-				+1.0
4,669,076	+				+1.6
4,669,152	-		GFF4673	0.12	-0.3
4,669,167	+		GFF4673	0.12	+0.4
4,669,168	+		GFF4673	0.13	-1.5
4,669,168	+		GFF4673	0.13	-0.6
4,669,168	-		GFF4673	0.13	+0.8
4,669,175	-		GFF4673	0.13	-0.4
4,669,195	-		GFF4673	0.14	-0.7
4,669,195	-		GFF4673	0.14	-0.1
4,669,195	-		GFF4673	0.14	-0.1
4,669,195	-		GFF4673	0.14	-0.3
4,669,241	-		GFF4673	0.17	-0.2
4,669,251	-		GFF4673	0.17	-0.7
4,669,304	+		GFF4673	0.21	-1.0
4,669,312	-		GFF4673	0.21	+0.2
4,669,339	+		GFF4673	0.23	+0.3
4,669,339	+		GFF4673	0.23	-1.2
4,669,339	+		GFF4673	0.23	+0.6
4,669,404	-		GFF4673	0.26	+0.0
4,669,404	-		GFF4673	0.26	-0.3
4,669,418	-		GFF4673	0.27	+0.9
4,669,423	-		GFF4673	0.28	+0.6
4,669,423	-		GFF4673	0.28	-0.7
4,669,477	+		GFF4673	0.31	+0.1
4,669,534	-		GFF4673	0.34	+0.7
4,669,550	+		GFF4673	0.35	+1.4
4,669,587	+		GFF4673	0.37	-0.2
4,669,590	-		GFF4673	0.37	-0.4
4,669,605	+		GFF4673	0.38	+0.7
4,669,654	+		GFF4673	0.41	-0.2
4,669,673	+		GFF4673	0.42	-1.0
4,669,681	-		GFF4673	0.43	+1.6
4,669,699	-		GFF4673	0.44	-0.3
4,669,734	-		GFF4673	0.46	-1.6
4,669,734	-		GFF4673	0.46	+0.8
4,669,810	-		GFF4673	0.50	+1.7
4,669,810	-		GFF4673	0.50	+3.4
4,669,881	+		GFF4673	0.55	+0.5
4,669,924	-		GFF4673	0.57	+0.4
4,669,926	+		GFF4673	0.57	+1.0
4,669,934	-		GFF4673	0.58	-0.0
4,669,940	+		GFF4673	0.58	+1.0
4,670,007	-		GFF4673	0.62	+0.2
4,670,059	-		GFF4673	0.65	+0.9
4,670,084	-		GFF4673	0.66	+3.0
4,670,140	+		GFF4673	0.70	+0.6
4,670,145	+		GFF4673	0.70	-0.1
4,670,153	+		GFF4673	0.71	+0.0
4,670,158	+		GFF4673	0.71	-0.3
4,670,160	+		GFF4673	0.71	-1.2
4,670,160	+		GFF4673	0.71	+0.2
4,670,161	-		GFF4673	0.71	+1.1
4,670,161	-		GFF4673	0.71	+0.0
4,670,163	+		GFF4673	0.71	-1.0
4,670,171	-		GFF4673	0.72	+0.9
4,670,172	-		GFF4673	0.72	+1.0
4,670,174	+		GFF4673	0.72	-1.2
4,670,182	-		GFF4673	0.72	+0.3
4,670,182	-		GFF4673	0.72	+0.0
4,670,182	-		GFF4673	0.72	-0.1
4,670,216	+		GFF4673	0.74	-0.3
4,670,218	+		GFF4673	0.74	+2.2
4,670,224	-		GFF4673	0.75	-0.9
4,670,224	-		GFF4673	0.75	+0.9
4,670,231	-		GFF4673	0.75	+1.2
4,670,352	+		GFF4673	0.82	+0.7
4,670,375	+		GFF4673	0.84	+1.7
4,670,378	-		GFF4673	0.84	-0.4
4,670,383	-		GFF4673	0.84	-0.8
4,670,406	-		GFF4673	0.85	+1.1
4,670,434	-		GFF4673	0.87	-0.3
4,670,436	+		GFF4673	0.87	+1.8
4,670,441	+		GFF4673	0.88	+0.6
4,670,480	+		GFF4673	0.90	-0.9
4,670,480	+		GFF4673	0.90	-0.4
4,670,480	+		GFF4673	0.90	+0.0
4,670,485	+				+1.8
4,670,485	+				-1.2
4,670,485	+				+0.8
4,670,485	+				+1.8
4,670,485	+				-0.3
4,670,488	-				-0.6
4,670,493	-				+0.6
4,670,493	-				+0.7
4,670,493	-				+0.7
4,670,493	-				-0.9
4,670,493	-				-0.2
4,670,508	+				+0.1
4,670,508	-				+0.7
4,670,558	-				+0.2
4,670,594	-				+0.0
4,670,594	-				-0.9
4,670,596	+				+0.2
4,670,643	-				+0.4
4,670,704	-				-0.2
4,670,726	-				+2.4
4,670,735	+				-0.1
4,670,741	-				-0.6
4,670,743	-				+1.8
4,670,743	-				+0.4
4,670,816	+		GFF4674	0.14	+1.5
4,670,817	-		GFF4674	0.15	+0.5
4,670,865	+		GFF4674	0.19	+1.4
4,670,875	+		GFF4674	0.20	+1.2
4,670,924	+		GFF4674	0.24	-1.2
4,670,936	-		GFF4674	0.25	-0.2
4,670,947	+		GFF4674	0.26	-1.0
4,670,947	+		GFF4674	0.26	+0.4
4,670,947	+		GFF4674	0.26	-1.2
4,670,947	+		GFF4674	0.26	-0.1
4,670,947	+		GFF4674	0.26	+1.4
4,670,947	+		GFF4674	0.26	+1.4
4,670,955	-		GFF4674	0.27	+1.0
4,670,955	-		GFF4674	0.27	+1.8
4,670,957	+		GFF4674	0.27	-1.3
4,670,957	+		GFF4674	0.27	+2.0
4,670,965	-		GFF4674	0.27	-0.1
4,670,970	-		GFF4674	0.28	-1.9
4,670,970	-		GFF4674	0.28	+0.0
4,670,970	-		GFF4674	0.28	+1.2
4,670,991	-		GFF4674	0.30	-0.2
4,671,010	-		GFF4674	0.31	-0.5
4,671,035	+		GFF4674	0.34	+0.5
4,671,050	+		GFF4674	0.35	-0.7
4,671,058	-		GFF4674	0.36	-0.6
4,671,058	-		GFF4674	0.36	-0.7
4,671,058	-		GFF4674	0.36	-0.8
4,671,058	-		GFF4674	0.36	-0.3
4,671,092	-		GFF4674	0.38	+2.0
4,671,122	-		GFF4674	0.41	+0.0
4,671,127	-		GFF4674	0.41	+0.4
4,671,127	-		GFF4674	0.41	+0.0
4,671,127	-		GFF4674	0.41	+0.4
4,671,150	+		GFF4674	0.43	+2.0
4,671,153	-		GFF4674	0.44	+0.1
4,671,168	+		GFF4674	0.45	-0.3
4,671,168	+		GFF4674	0.45	+0.7
4,671,173	+		GFF4674	0.45	-0.2
4,671,176	-		GFF4674	0.46	+0.3
4,671,183	-		GFF4674	0.46	-2.0
4,671,200	+		GFF4674	0.48	-0.7
4,671,209	+		GFF4674	0.49	+0.2
4,671,210	+		GFF4674	0.49	+0.4
4,671,265	+		GFF4674	0.53	+1.9
4,671,321	-		GFF4674	0.58	-0.2
4,671,394	+		GFF4674	0.65	+0.5
4,671,394	+		GFF4674	0.65	+0.4
4,671,394	+		GFF4674	0.65	+1.0
4,671,394	+		GFF4674	0.65	-0.6
4,671,422	+		GFF4674	0.67	-0.2
4,671,436	+		GFF4674	0.68	-1.8
4,671,436	+		GFF4674	0.68	+2.4
4,671,444	+		GFF4674	0.69	-0.5
4,671,444	-		GFF4674	0.69	+0.1
4,671,449	-		GFF4674	0.69	-0.0
4,671,450	-		GFF4674	0.70	-1.3
4,671,483	+		GFF4674	0.72	+0.8
4,671,529	+		GFF4674	0.76	+1.0
4,671,570	+		GFF4674	0.80	-1.0
4,671,578	-		GFF4674	0.81	+1.5
4,671,582	-		GFF4674	0.81	+0.4
4,671,610	+		GFF4674	0.83	+3.0
4,671,610	+		GFF4674	0.83	+1.4
4,671,610	+		GFF4674	0.83	+0.4
4,671,610	+		GFF4674	0.83	-0.5
4,671,617	+		GFF4674	0.84	+0.8
4,671,618	-		GFF4674	0.84	+0.9
4,671,633	+		GFF4674	0.85	+1.5