Strain Fitness in Sphingobium sp. HT1-2 around GFF4661

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,660,160	-		GFF4659	0.55	-0.5
4,660,164	-		GFF4659	0.56	-1.4
4,660,166	+		GFF4659	0.56	-2.0
4,660,174	-		GFF4659	0.57	+0.3
4,660,179	-		GFF4659	0.57	+0.8
4,660,180	+		GFF4659	0.57	+0.5
4,660,180	+		GFF4659	0.57	-1.0
4,660,188	+		GFF4659	0.58	-0.5
4,660,188	-		GFF4659	0.58	-0.1
4,660,188	-		GFF4659	0.58	-0.8
4,660,196	-		GFF4659	0.59	+1.3
4,660,196	-		GFF4659	0.59	-1.1
4,660,196	-		GFF4659	0.59	-1.2
4,660,196	-		GFF4659	0.59	-0.2
4,660,201	-		GFF4659	0.59	-1.0
4,660,211	-		GFF4659	0.60	-1.5
4,660,211	-		GFF4659	0.60	-1.5
4,660,212	+		GFF4659	0.60	-0.7
4,660,213	+		GFF4659	0.61	+1.0
4,660,218	+		GFF4659	0.61	+0.6
4,660,221	-		GFF4659	0.61	-0.3
4,660,229	+		GFF4659	0.62	-0.8
4,660,231	-		GFF4659	0.62	+0.5
4,660,231	-		GFF4659	0.62	-1.8
4,660,231	-		GFF4659	0.62	-1.2
4,660,231	-		GFF4659	0.62	-1.3
4,660,237	-		GFF4659	0.63	-0.9
4,660,237	-		GFF4659	0.63	-0.8
4,660,237	-		GFF4659	0.63	+0.9
4,660,247	-		GFF4659	0.64	-0.9
4,660,254	-		GFF4659	0.65	-0.6
4,660,254	-		GFF4659	0.65	-2.0
4,660,270	-		GFF4659	0.66	-0.0
4,660,275	+		GFF4659	0.67	-0.0
4,660,278	-		GFF4659	0.67	+0.5
4,660,293	+		GFF4659	0.68	-0.0
4,660,293	+		GFF4659	0.68	-0.5
4,660,293	+		GFF4659	0.68	-1.5
4,660,293	+		GFF4659	0.68	-0.9
4,660,293	+		GFF4659	0.68	-1.5
4,660,293	+		GFF4659	0.68	-0.5
4,660,301	-		GFF4659	0.69	-1.8
4,660,301	-		GFF4659	0.69	-2.0
4,660,309	-		GFF4659	0.70	-0.9
4,660,311	-		GFF4659	0.70	-1.3
4,660,328	+		GFF4659	0.72	-0.5
4,660,343	-		GFF4659	0.73	-0.7
4,660,345	+		GFF4659	0.73	-0.9
4,660,345	+		GFF4659	0.73	-0.5
4,660,348	-		GFF4659	0.74	-1.4
4,660,348	-		GFF4659	0.74	-1.8
4,660,348	-		GFF4659	0.74	-1.5
4,660,353	-		GFF4659	0.74	+0.5
4,660,373	+		GFF4659	0.76	-0.5
4,660,381	-		GFF4659	0.77	-0.9
4,660,384	+		GFF4659	0.77	-0.4
4,660,384	+		GFF4659	0.77	-0.6
4,660,384	+		GFF4659	0.77	-1.1
4,660,384	+		GFF4659	0.77	-1.0
4,660,392	-		GFF4659	0.78	-1.0
4,660,392	-		GFF4659	0.78	-0.9
4,660,392	-		GFF4659	0.78	-0.5
4,660,392	-		GFF4659	0.78	-0.6
4,660,392	-		GFF4659	0.78	-0.5
4,660,392	-		GFF4659	0.78	-0.8
4,660,392	-		GFF4659	0.78	+1.0
4,660,401	+		GFF4659	0.79	-2.5
4,660,404	-		GFF4659	0.79	-1.3
4,660,411	+		GFF4659	0.80	-0.8
4,660,411	+		GFF4659	0.80	-0.2
4,660,411	+		GFF4659	0.80	+1.8
4,660,416	+		GFF4659	0.80	-1.8
4,660,418	+		GFF4659	0.80	-0.5
4,660,418	+		GFF4659	0.80	-1.3
4,660,419	-		GFF4659	0.81	-0.4
4,660,419	-		GFF4659	0.81	-1.3
4,660,424	-		GFF4659	0.81	-0.4
4,660,426	-		GFF4659	0.81	-1.0
4,660,426	-		GFF4659	0.81	-1.0
4,660,426	-		GFF4659	0.81	-1.0
4,660,426	-		GFF4659	0.81	+0.2
4,660,440	+		GFF4659	0.83	-0.7
4,660,450	+		GFF4659	0.84	+0.7
4,660,450	+		GFF4659	0.84	+0.1
4,660,458	-		GFF4659	0.84	-0.3
4,660,467	+		GFF4659	0.85	-0.4
4,660,467	+		GFF4659	0.85	-0.9
4,660,470	-		GFF4659	0.86	+1.0
4,660,475	-		GFF4659	0.86	+0.3
4,660,475	-		GFF4659	0.86	-0.5
4,660,475	-		GFF4659	0.86	-0.3
4,660,478	+		GFF4659	0.86	-0.1
4,660,480	-		GFF4659	0.86	+1.0
4,660,490	-		GFF4659	0.87	+1.0
4,660,491	+		GFF4659	0.88	-2.1
4,660,499	-		GFF4659	0.88	-1.5
4,660,499	-		GFF4659	0.88	+0.7
4,660,499	-		GFF4659	0.88	-0.8
4,660,499	-		GFF4659	0.88	+1.2
4,660,499	-		GFF4659	0.88	-0.9
4,660,499	-		GFF4659	0.88	+0.6
4,660,508	+		GFF4659	0.89	-0.2
4,660,508	+		GFF4659	0.89	-0.6
4,660,516	-				-1.7
4,660,516	-				-1.3
4,660,550	+				+0.6
4,660,555	+				-1.2
4,660,557	-				-1.8
4,660,557	-				+0.1
4,660,569	+				-1.2
4,660,569	+				-0.3
4,660,569	+				-0.4
4,660,579	+				+0.6
4,660,579	+				-0.2
4,660,579	+				-1.7
4,660,579	+				-1.5
4,660,581	+				-1.7
4,660,581	+				-0.5
4,660,582	-				+0.2
4,660,582	-				-2.5
4,660,587	-				-0.5
4,660,587	-				+0.5
4,660,587	-				-1.8
4,660,599	-				-1.0
4,660,622	+				-2.0
4,660,622	+				+0.8
4,660,627	+				+1.4
4,660,674	-				-0.5
4,660,681	+		GFF4660	0.11	-0.3
4,660,699	-		GFF4660	0.14	-2.3
4,660,729	-		GFF4660	0.20	-0.5
4,660,741	-		GFF4660	0.22	-1.8
4,660,743	+		GFF4660	0.22	-0.5
4,660,743	+		GFF4660	0.22	+0.1
4,660,751	-		GFF4660	0.24	+0.5
4,660,751	-		GFF4660	0.24	+1.0
4,660,751	-		GFF4660	0.24	-1.1
4,660,759	+		GFF4660	0.25	-1.0
4,660,759	+		GFF4660	0.25	+0.2
4,660,765	-		GFF4660	0.26	-0.3
4,660,765	-		GFF4660	0.26	-0.5
4,660,767	+		GFF4660	0.27	-1.7
4,660,767	+		GFF4660	0.27	-0.2
4,660,767	+		GFF4660	0.27	-1.7
4,660,767	-		GFF4660	0.27	-0.2
4,660,770	-		GFF4660	0.27	-2.4
4,660,775	-		GFF4660	0.28	-0.1
4,660,775	-		GFF4660	0.28	+0.8
4,660,775	-		GFF4660	0.28	+0.9
4,660,775	-		GFF4660	0.28	-1.5
4,660,775	-		GFF4660	0.28	+0.9
4,660,775	-		GFF4660	0.28	-1.7
4,660,777	+		GFF4660	0.28	-0.5
4,660,777	+		GFF4660	0.28	+1.2
4,660,790	+		GFF4660	0.31	+1.5
4,660,794	+		GFF4660	0.32	+0.8
4,660,847	+		GFF4660	0.42	+0.6
4,660,847	+		GFF4660	0.42	-1.0
4,660,847	+		GFF4660	0.42	-3.3
4,660,847	+		GFF4660	0.42	+0.6
4,660,847	+		GFF4660	0.42	+0.6
4,660,852	+		GFF4660	0.42	-0.9
4,660,855	-		GFF4660	0.43	-1.5
4,660,855	-		GFF4660	0.43	-1.3
4,660,855	-		GFF4660	0.43	-1.0
4,660,855	-		GFF4660	0.43	+2.2
4,660,858	+		GFF4660	0.44	-0.5
4,660,861	-		GFF4660	0.44	-1.2
4,660,895	+		GFF4660	0.50	-1.0
4,660,903	-		GFF4660	0.52	-1.9
4,660,914	-		GFF4660	0.54	+0.5
4,660,917	+		GFF4660	0.55	-0.7
4,660,921	+		GFF4660	0.55	-0.6
4,660,921	+		GFF4660	0.55	+0.4
4,660,921	+		GFF4660	0.55	-0.9
4,660,921	+		GFF4660	0.55	+1.8
4,660,925	-		GFF4660	0.56	-0.8
4,660,925	-		GFF4660	0.56	-1.2
4,660,929	-		GFF4660	0.57	-1.7
4,660,929	-		GFF4660	0.57	+0.7
4,660,929	-		GFF4660	0.57	-1.4
4,660,934	-		GFF4660	0.58	-0.8
4,660,936	+		GFF4660	0.58	-0.7
4,660,937	+		GFF4660	0.58	-0.8
4,660,937	+		GFF4660	0.58	-0.5
4,660,945	-		GFF4660	0.60	-0.9
4,660,945	-		GFF4660	0.60	-1.0
4,660,945	-		GFF4660	0.60	-0.7
4,660,952	+		GFF4660	0.61	+0.2
4,660,957	+		GFF4660	0.62	+0.2
4,660,958	+		GFF4660	0.62	+1.7
4,660,960	-		GFF4660	0.63	+0.5
4,660,961	-		GFF4660	0.63	-1.6
4,660,971	+		GFF4660	0.65	-0.9
4,660,979	-		GFF4660	0.66	-0.9
4,660,979	-		GFF4660	0.66	-1.0
4,660,979	-		GFF4660	0.66	-1.6
4,660,979	-		GFF4660	0.66	-1.1
4,661,000	+		GFF4660	0.70	+0.4
4,661,034	+		GFF4660	0.76	+0.6
4,661,037	-		GFF4660	0.77	+0.4
4,661,038	+		GFF4660	0.77	+0.1
4,661,039	+		GFF4660	0.77	-0.4
4,661,039	+		GFF4660	0.77	-1.7
4,661,051	-		GFF4660	0.80	-1.8
4,661,073	+		GFF4660	0.84	-1.1
4,661,080	+		GFF4660	0.85	-0.4
4,661,132	+				-2.2
4,661,136	+				-1.3
4,661,140	-				-1.3
4,661,141	-				+1.1
4,661,148	+				-0.7
4,661,148	+				-0.5
4,661,156	-				+1.0
4,661,203	+		GFF4661	0.11	-0.2
4,661,203	+		GFF4661	0.11	-0.9
4,661,203	+		GFF4661	0.11	-1.6
4,661,203	+		GFF4661	0.11	-1.7
4,661,211	-		GFF4661	0.13	-1.3
4,661,211	-		GFF4661	0.13	-1.0
4,661,211	-		GFF4661	0.13	-1.1
4,661,213	+		GFF4661	0.14	-1.3
4,661,219	-		GFF4661	0.15	-0.4
4,661,221	-		GFF4661	0.15	+0.3
4,661,228	+		GFF4661	0.17	-0.4
4,661,229	+		GFF4661	0.17	-0.5
4,661,229	+		GFF4661	0.17	+0.3
4,661,229	+		GFF4661	0.17	-1.3
4,661,229	+		GFF4661	0.17	+0.2
4,661,229	+		GFF4661	0.17	-1.3
4,661,229	+		GFF4661	0.17	-1.1
4,661,230	-		GFF4661	0.18	-1.3
4,661,237	-		GFF4661	0.19	-1.3
4,661,237	-		GFF4661	0.19	-1.4
4,661,237	-		GFF4661	0.19	+0.2
4,661,237	-		GFF4661	0.19	-0.1
4,661,237	-		GFF4661	0.19	-1.1
4,661,237	-		GFF4661	0.19	-2.0
4,661,237	-		GFF4661	0.19	-2.0
4,661,237	-		GFF4661	0.19	+0.5
4,661,237	-		GFF4661	0.19	-0.8
4,661,237	-		GFF4661	0.19	-1.6
4,661,237	-		GFF4661	0.19	+0.0
4,661,237	-		GFF4661	0.19	-0.5
4,661,237	-		GFF4661	0.19	+0.6
4,661,239	+		GFF4661	0.20	-1.3
4,661,248	+		GFF4661	0.22	+1.8
4,661,256	-		GFF4661	0.24	-0.3
4,661,258	+		GFF4661	0.24	-0.3
4,661,258	+		GFF4661	0.24	-1.0
4,661,259	-		GFF4661	0.25	-0.5
4,661,270	+		GFF4661	0.27	+2.0
4,661,270	+		GFF4661	0.27	+0.5
4,661,275	+		GFF4661	0.29	-0.8
4,661,300	+		GFF4661	0.35	-1.2
4,661,300	+		GFF4661	0.35	-1.0
4,661,300	+		GFF4661	0.35	+1.2
4,661,300	+		GFF4661	0.35	+1.1
4,661,300	+		GFF4661	0.35	-0.0
4,661,300	+		GFF4661	0.35	-0.3
4,661,300	+		GFF4661	0.35	-1.1
4,661,300	+		GFF4661	0.35	+0.2
4,661,300	+		GFF4661	0.35	+0.5
4,661,300	-		GFF4661	0.35	-0.0
4,661,308	-		GFF4661	0.36	+0.6
4,661,333	-		GFF4661	0.43	+0.5
4,661,333	-		GFF4661	0.43	+0.2
4,661,349	-		GFF4661	0.46	-0.3
4,661,360	+		GFF4661	0.49	+1.0
4,661,360	+		GFF4661	0.49	+0.7
4,661,374	-		GFF4661	0.52	-1.5
4,661,377	+		GFF4661	0.53	-0.3
4,661,385	-		GFF4661	0.55	-0.9
4,661,424	+		GFF4661	0.64	-2.1
4,661,424	+		GFF4661	0.64	-1.1
4,661,424	+		GFF4661	0.64	-2.0
4,661,424	+		GFF4661	0.64	-1.4
4,661,447	-		GFF4661	0.70	-0.7
4,661,451	+		GFF4661	0.71	+0.9
4,661,451	+		GFF4661	0.71	+0.1
4,661,451	+		GFF4661	0.71	-0.8
4,661,451	+		GFF4661	0.71	-0.3
4,661,452	-		GFF4661	0.71	-1.3
4,661,452	-		GFF4661	0.71	-1.0
4,661,459	-		GFF4661	0.73	-0.5
4,661,459	-		GFF4661	0.73	-0.9
4,661,461	+		GFF4661	0.73	-1.0
4,661,461	+		GFF4661	0.73	+0.3
4,661,461	+		GFF4661	0.73	-1.2
4,661,469	-		GFF4661	0.75	-1.3
4,661,469	-		GFF4661	0.75	+0.9
4,661,469	-		GFF4661	0.75	+0.1
4,661,480	+		GFF4661	0.78	-1.5
4,661,480	+		GFF4661	0.78	+2.0
4,661,486	+		GFF4661	0.79	-0.0
4,661,494	-		GFF4661	0.81	-1.9
4,661,516	+		GFF4661	0.87	-0.5
4,661,519	-		GFF4661	0.87	+0.3
4,661,530	+				-1.3
4,661,543	+				-2.0
4,661,543	+				-1.0
4,661,551	-				-0.4
4,661,551	-				-0.6
4,661,551	-				-1.5
4,661,551	-				-1.7
4,661,568	-				-0.3
4,661,572	-				-1.0
4,661,585	-				-2.5
4,661,598	-				+0.0
4,661,598	-				-1.2
4,661,598	-				-0.8
4,661,604	+				-2.0
4,661,609	+		GFF4662	0.12	-1.9
4,661,617	-		GFF4662	0.15	+0.9
4,661,617	-		GFF4662	0.15	+0.4
4,661,619	+		GFF4662	0.16	-0.0
4,661,619	+		GFF4662	0.16	-1.5
4,661,627	-		GFF4662	0.20	+1.2
4,661,627	-		GFF4662	0.20	+0.6
4,661,627	-		GFF4662	0.20	-0.5
4,661,636	+		GFF4662	0.24	-0.8
4,661,644	-		GFF4662	0.27	-0.5
4,661,658	+		GFF4662	0.33	-0.2
4,661,658	+		GFF4662	0.33	-0.4
4,661,658	+		GFF4662	0.33	-0.8
4,661,659	-		GFF4662	0.33	-0.3
4,661,666	-		GFF4662	0.36	-1.5
4,661,690	+		GFF4662	0.47	+0.2
4,661,692	+		GFF4662	0.47	-0.3
4,661,698	-		GFF4662	0.50	+0.3
4,661,700	+		GFF4662	0.51	-1.7
4,661,708	-		GFF4662	0.54	-0.5
4,661,724	+		GFF4662	0.61	-1.1
4,661,724	+		GFF4662	0.61	-1.8
4,661,724	+		GFF4662	0.61	-1.2
4,661,724	+		GFF4662	0.61	-2.8
4,661,724	+		GFF4662	0.61	+0.2
4,661,727	-		GFF4662	0.62	-0.7
4,661,732	-		GFF4662	0.65	+0.1
4,661,732	-		GFF4662	0.65	-2.2
4,661,732	-		GFF4662	0.65	-0.7
4,661,732	-		GFF4662	0.65	-1.8
4,661,732	-		GFF4662	0.65	-0.8
4,661,732	-		GFF4662	0.65	+0.5
4,661,735	+		GFF4662	0.66	-2.4
4,661,735	+		GFF4662	0.66	-1.8
4,661,735	+		GFF4662	0.66	+0.5
4,661,737	-		GFF4662	0.67	+0.5
4,661,743	-		GFF4662	0.69	-0.1
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