Strain Fitness in Sphingobium sp. HT1-2 around GFF4579

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,569,777	+		GFF4577	0.89	+0.2
4,569,778	+		GFF4577	0.89	-1.1
4,569,783	+		GFF4577	0.90	-2.6
4,569,786	-		GFF4577	0.90	+0.2
4,569,786	-		GFF4577	0.90	-0.7
4,569,793	+				-0.2
4,569,797	-				+0.1
4,569,803	+				-1.6
4,569,803	+				-1.5
4,569,865	+				-0.5
4,569,865	+				+0.8
4,569,873	-				-1.9
4,569,873	-				-0.5
4,569,882	+				-0.8
4,569,900	+				-1.6
4,569,900	+				-0.5
4,569,908	-				-0.2
4,569,908	-				-1.2
4,569,916	+				+2.1
4,569,968	-				-1.4
4,570,013	+				-1.2
4,570,019	-				+1.2
4,570,031	+				-2.0
4,570,056	+				-0.7
4,570,057	+				-1.5
4,570,057	+				+0.4
4,570,096	-				+0.7
4,570,100	+				+1.1
4,570,118	+				-0.5
4,570,284	+				-1.9
4,570,294	+				-0.2
4,570,294	+				-1.2
4,570,315	+				-0.6
4,570,343	+				+0.3
4,570,352	+				-1.9
4,570,357	+				-1.1
4,570,357	+				-2.3
4,570,357	+				-0.7
4,570,357	+				-0.8
4,570,357	+				-2.7
4,570,357	+				+0.4
4,570,360	-				-0.7
4,570,365	-				-1.2
4,570,365	-				-0.1
4,570,365	-				-2.1
4,570,365	-				-1.2
4,570,367	+				-2.5
4,570,367	+				+1.0
4,570,375	-				-1.2
4,570,383	+				-1.7
4,570,396	-		GFF4578	0.11	-0.8
4,570,407	+		GFF4578	0.14	-1.2
4,570,424	+		GFF4578	0.19	+1.2
4,570,452	+		GFF4578	0.27	-0.4
4,570,474	+		GFF4578	0.34	+0.5
4,570,482	-		GFF4578	0.36	-1.4
4,570,506	+		GFF4578	0.43	+1.2
4,570,512	+		GFF4578	0.45	-1.9
4,570,520	-		GFF4578	0.48	+1.3
4,570,520	-		GFF4578	0.48	+0.9
4,570,569	-		GFF4578	0.62	+0.2
4,570,591	-		GFF4578	0.69	-0.6
4,570,619	+		GFF4578	0.77	-0.7
4,570,624	+		GFF4578	0.79	+0.6
4,570,624	+		GFF4578	0.79	-0.5
4,570,624	+		GFF4578	0.79	+1.3
4,570,624	+		GFF4578	0.79	-0.9
4,570,624	+		GFF4578	0.79	-2.2
4,570,626	+		GFF4578	0.79	-0.3
4,570,632	-		GFF4578	0.81	-1.9
4,570,632	-		GFF4578	0.81	-1.0
4,570,632	-		GFF4578	0.81	-1.5
4,570,634	-		GFF4578	0.82	+0.0
4,570,634	-		GFF4578	0.82	+0.0
4,570,658	+		GFF4578	0.89	-0.6
4,570,661	-		GFF4578	0.90	-0.1
4,570,666	-				+0.1
4,570,667	+				+0.4
4,570,667	+				-0.7
4,570,667	+				-0.7
4,570,667	+				-1.5
4,570,667	+				-1.1
4,570,672	+				-2.1
4,570,675	-				-2.7
4,570,675	-				-0.3
4,570,675	-				-1.3
4,570,675	-				-0.7
4,570,675	-				-0.9
4,570,684	+				-0.7
4,570,684	+				+1.7
4,570,684	+				+0.9
4,570,684	+				+0.1
4,570,684	+				-0.0
4,570,684	+				+1.3
4,570,684	+				-0.4
4,570,684	+				-1.5
4,570,684	+				+0.1
4,570,692	-				-0.8
4,570,692	-				+0.8
4,570,692	-				-2.5
4,570,692	-				-0.2
4,570,692	-				+1.3
4,570,692	-				+0.3
4,570,692	-				-1.8
4,570,698	-				-0.1
4,570,698	-				-0.1
4,570,700	+				-1.6
4,570,712	-				+1.3
4,570,741	+				+0.2
4,570,764	+				-0.7
4,570,788	+				+0.5
4,570,788	+				+0.1
4,570,788	+				-0.7
4,570,788	+				+0.6
4,570,793	+				+0.7
4,570,800	+				-0.9
4,570,800	+				-0.8
4,570,805	+				-0.8
4,570,808	-				-2.1
4,570,808	-				-1.8
4,570,808	-				+1.0
4,570,815	+				-0.9
4,570,826	+				-1.1
4,570,840	-				-0.7
4,570,848	+				-1.2
4,570,857	+				-0.7
4,570,857	+				-1.1
4,570,865	+				+0.1
4,570,865	-				-1.3
4,570,865	-				-1.6
4,570,870	-				-0.3
4,570,878	-				-0.7
4,570,903	-		GFF4579	0.11	-0.1
4,570,913	+		GFF4579	0.11	-0.8
4,570,921	-		GFF4579	0.12	-0.1
4,570,923	+		GFF4579	0.12	-1.0
4,570,928	+		GFF4579	0.13	-0.5
4,570,928	+		GFF4579	0.13	-0.2
4,570,931	-		GFF4579	0.13	+0.1
4,570,989	+		GFF4579	0.17	-0.6
4,570,989	-		GFF4579	0.17	-0.9
4,570,989	-		GFF4579	0.17	-0.8
4,570,998	+		GFF4579	0.18	-0.5
4,571,001	+		GFF4579	0.18	-1.7
4,571,035	-		GFF4579	0.21	-0.2
4,571,035	-		GFF4579	0.21	-0.7
4,571,048	-		GFF4579	0.22	-1.5
4,571,059	-		GFF4579	0.23	-1.8
4,571,060	+		GFF4579	0.23	-1.5
4,571,062	+		GFF4579	0.23	-0.8
4,571,068	-		GFF4579	0.24	-0.6
4,571,068	-		GFF4579	0.24	-0.2
4,571,082	-		GFF4579	0.25	-0.5
4,571,096	+		GFF4579	0.26	-0.3
4,571,116	+		GFF4579	0.27	-1.5
4,571,124	-		GFF4579	0.28	-1.6
4,571,135	+		GFF4579	0.29	-0.9
4,571,147	-		GFF4579	0.30	-0.4
4,571,152	-		GFF4579	0.30	-1.2
4,571,162	+		GFF4579	0.31	-1.9
4,571,168	+		GFF4579	0.32	-1.1
4,571,189	+		GFF4579	0.33	-0.7
4,571,189	+		GFF4579	0.33	-1.2
4,571,189	+		GFF4579	0.33	+0.7
4,571,197	-		GFF4579	0.34	-0.3
4,571,197	-		GFF4579	0.34	-0.2
4,571,197	-		GFF4579	0.34	+0.8
4,571,197	-		GFF4579	0.34	+0.3
4,571,197	-		GFF4579	0.34	-1.1
4,571,197	-		GFF4579	0.34	+0.2
4,571,197	-		GFF4579	0.34	-1.4
4,571,197	-		GFF4579	0.34	-0.8
4,571,231	-		GFF4579	0.37	-0.8
4,571,243	+		GFF4579	0.37	-0.8
4,571,251	-		GFF4579	0.38	-2.0
4,571,270	+		GFF4579	0.40	-1.5
4,571,270	+		GFF4579	0.40	-1.0
4,571,285	+		GFF4579	0.41	-0.7
4,571,285	+		GFF4579	0.41	+0.5
4,571,285	+		GFF4579	0.41	-0.2
4,571,285	+		GFF4579	0.41	-0.5
4,571,285	+		GFF4579	0.41	-1.0
4,571,285	+		GFF4579	0.41	-1.2
4,571,285	+		GFF4579	0.41	-1.7
4,571,293	-		GFF4579	0.41	-0.8
4,571,293	-		GFF4579	0.41	-1.4
4,571,299	-		GFF4579	0.42	-0.1
4,571,300	+		GFF4579	0.42	-1.0
4,571,324	+		GFF4579	0.44	-0.3
4,571,339	+		GFF4579	0.45	+0.2
4,571,339	+		GFF4579	0.45	-0.5
4,571,339	+		GFF4579	0.45	-0.6
4,571,347	-		GFF4579	0.46	-1.1
4,571,347	-		GFF4579	0.46	-1.1
4,571,347	-		GFF4579	0.46	-1.0
4,571,358	-		GFF4579	0.47	+0.8
4,571,360	+		GFF4579	0.47	+0.0
4,571,360	+		GFF4579	0.47	-0.5
4,571,360	+		GFF4579	0.47	+0.3
4,571,360	+		GFF4579	0.47	-0.8
4,571,368	-		GFF4579	0.47	-2.0
4,571,368	-		GFF4579	0.47	-1.1
4,571,368	-		GFF4579	0.47	+0.1
4,571,368	-		GFF4579	0.47	-0.7
4,571,368	-		GFF4579	0.47	-2.1
4,571,368	-		GFF4579	0.47	-1.7
4,571,368	-		GFF4579	0.47	-0.5
4,571,368	-		GFF4579	0.47	+0.9
4,571,368	-		GFF4579	0.47	-1.2
4,571,378	+		GFF4579	0.48	+0.0
4,571,379	+		GFF4579	0.48	-1.5
4,571,379	+		GFF4579	0.48	-2.2
4,571,379	+		GFF4579	0.48	-1.9
4,571,382	-		GFF4579	0.48	-0.7
4,571,382	-		GFF4579	0.48	-0.4
4,571,382	-		GFF4579	0.48	-0.5
4,571,387	-		GFF4579	0.49	-1.1
4,571,387	-		GFF4579	0.49	-0.3
4,571,397	+		GFF4579	0.50	-0.9
4,571,405	-		GFF4579	0.50	-1.8
4,571,405	-		GFF4579	0.50	-0.6
4,571,433	+		GFF4579	0.52	-0.1
4,571,435	+		GFF4579	0.53	+0.5
4,571,467	-		GFF4579	0.55	-0.0
4,571,468	+		GFF4579	0.55	-0.1
4,571,476	+		GFF4579	0.56	-0.8
4,571,476	+		GFF4579	0.56	-1.5
4,571,476	+		GFF4579	0.56	-2.3
4,571,476	+		GFF4579	0.56	-1.2
4,571,484	+		GFF4579	0.57	-1.6
4,571,486	-		GFF4579	0.57	+0.5
4,571,492	-		GFF4579	0.57	-1.1
4,571,492	-		GFF4579	0.57	-1.5
4,571,501	+		GFF4579	0.58	+0.5
4,571,506	+		GFF4579	0.58	-2.6
4,571,510	+		GFF4579	0.59	-0.8
4,571,510	+		GFF4579	0.59	-2.6
4,571,510	+		GFF4579	0.59	+1.1
4,571,545	-		GFF4579	0.61	-1.3
4,571,604	+		GFF4579	0.66	-2.2
4,571,604	+		GFF4579	0.66	-0.8
4,571,612	-		GFF4579	0.67	-1.1
4,571,612	-		GFF4579	0.67	-0.9
4,571,612	-		GFF4579	0.67	+0.3
4,571,614	+		GFF4579	0.67	-1.5
4,571,614	+		GFF4579	0.67	-1.3
4,571,614	+		GFF4579	0.67	-1.0
4,571,614	+		GFF4579	0.67	-0.7
4,571,622	-		GFF4579	0.67	-1.2
4,571,622	-		GFF4579	0.67	-1.9
4,571,637	+		GFF4579	0.69	-0.5
4,571,637	+		GFF4579	0.69	-0.4
4,571,637	+		GFF4579	0.69	-0.8
4,571,637	+		GFF4579	0.69	-1.1
4,571,637	+		GFF4579	0.69	-0.8
4,571,637	+		GFF4579	0.69	-2.1
4,571,637	+		GFF4579	0.69	-1.7
4,571,637	+		GFF4579	0.69	-1.1
4,571,637	+		GFF4579	0.69	-1.4
4,571,637	+		GFF4579	0.69	-0.0
4,571,637	+		GFF4579	0.69	-1.6
4,571,637	+		GFF4579	0.69	+2.5
4,571,637	+		GFF4579	0.69	-0.7
4,571,637	+		GFF4579	0.69	+0.5
4,571,637	+		GFF4579	0.69	-0.3
4,571,637	+		GFF4579	0.69	-1.2
4,571,637	+		GFF4579	0.69	-0.9
4,571,637	+		GFF4579	0.69	+0.8
4,571,645	-		GFF4579	0.69	-1.5
4,571,645	-		GFF4579	0.69	-0.5
4,571,645	-		GFF4579	0.69	-1.9
4,571,645	-		GFF4579	0.69	-0.7
4,571,645	-		GFF4579	0.69	+0.5
4,571,645	-		GFF4579	0.69	-0.2
4,571,645	-		GFF4579	0.69	+0.7
4,571,645	-		GFF4579	0.69	-1.1
4,571,645	-		GFF4579	0.69	-0.5
4,571,645	-		GFF4579	0.69	-1.2
4,571,645	-		GFF4579	0.69	-0.5
4,571,645	-		GFF4579	0.69	-0.0
4,571,645	-		GFF4579	0.69	-1.0
4,571,645	-		GFF4579	0.69	+0.7
4,571,645	-		GFF4579	0.69	-1.0
4,571,650	-		GFF4579	0.70	-1.2
4,571,668	-		GFF4579	0.71	+0.6
4,571,690	-		GFF4579	0.73	+0.0
4,571,694	+		GFF4579	0.73	+1.1
4,571,702	+		GFF4579	0.74	-1.8
4,571,702	+		GFF4579	0.74	-1.5
4,571,714	+		GFF4579	0.75	-1.9
4,571,719	+		GFF4579	0.75	-1.0
4,571,722	-		GFF4579	0.75	-0.9
4,571,722	-		GFF4579	0.75	-2.8
4,571,723	+		GFF4579	0.75	-1.2
4,571,730	+		GFF4579	0.76	-2.0
4,571,730	+		GFF4579	0.76	-0.4
4,571,730	+		GFF4579	0.76	-1.7
4,571,730	+		GFF4579	0.76	-0.6
4,571,730	+		GFF4579	0.76	-0.9
4,571,730	+		GFF4579	0.76	+0.3
4,571,730	+		GFF4579	0.76	-0.9
4,571,730	+		GFF4579	0.76	-2.8
4,571,730	+		GFF4579	0.76	-1.1
4,571,731	-		GFF4579	0.76	-1.2
4,571,738	+		GFF4579	0.77	-1.4
4,571,738	-		GFF4579	0.77	-1.8
4,571,738	-		GFF4579	0.77	-1.4
4,571,738	-		GFF4579	0.77	-0.7
4,571,738	-		GFF4579	0.77	-1.4
4,571,746	-		GFF4579	0.77	-1.3
4,571,755	+		GFF4579	0.78	-0.5
4,571,755	+		GFF4579	0.78	+0.0
4,571,755	+		GFF4579	0.78	-0.5
4,571,763	-		GFF4579	0.79	-0.5
4,571,763	-		GFF4579	0.79	-1.7
4,571,765	+		GFF4579	0.79	-0.5
4,571,765	+		GFF4579	0.79	-1.2
4,571,765	+		GFF4579	0.79	-0.5
4,571,765	+		GFF4579	0.79	-0.6
4,571,766	+		GFF4579	0.79	+0.0
4,571,773	-		GFF4579	0.79	-1.9
4,571,773	-		GFF4579	0.79	+0.2
4,571,773	-		GFF4579	0.79	-2.1
4,571,773	-		GFF4579	0.79	-1.7
4,571,773	-		GFF4579	0.79	-0.9
4,571,773	-		GFF4579	0.79	-0.8
4,571,773	-		GFF4579	0.79	-1.6
4,571,773	-		GFF4579	0.79	+0.1
4,571,773	-		GFF4579	0.79	-1.3
4,571,773	-		GFF4579	0.79	+0.3
4,571,773	-		GFF4579	0.79	-1.5
4,571,778	-		GFF4579	0.80	-0.8
4,571,793	-		GFF4579	0.81	-2.2
4,571,799	+		GFF4579	0.81	-1.5
4,571,824	-		GFF4579	0.83	-1.0
4,571,827	+		GFF4579	0.84	+0.1
4,571,832	+		GFF4579	0.84	-0.2
4,571,834	+		GFF4579	0.84	-1.4
4,571,834	+		GFF4579	0.84	-0.4
4,571,834	+		GFF4579	0.84	-1.5
4,571,834	-		GFF4579	0.84	-0.7
4,571,840	-		GFF4579	0.85	-0.1
4,571,842	-		GFF4579	0.85	+0.5
4,571,842	-		GFF4579	0.85	+1.1
4,571,842	-		GFF4579	0.85	-1.3
4,571,844	+		GFF4579	0.85	+0.7
4,571,845	+		GFF4579	0.85	-2.9
4,571,850	-		GFF4579	0.86	-1.3
4,571,890	+		GFF4579	0.89	-0.2
4,571,899	+		GFF4579	0.89	-1.6
4,571,912	-				-1.8
4,571,914	+				+0.0
4,571,931	+				-0.1
4,571,939	-				-1.0
4,571,965	+				-0.5
4,571,965	+				+0.1
4,571,965	+				-1.0
4,571,965	+				+0.5
4,571,965	+				+0.2
4,571,965	+				-0.5
4,571,973	-				-1.6
4,571,973	-				-1.2
4,571,973	-				-0.2
4,571,973	-				-1.0
4,571,973	-				+0.4
4,571,983	-				+0.2
4,571,990	+				-0.5
4,571,996	-				-1.3
4,571,996	-				-1.0
4,572,013	+				+0.3
4,572,013	+				-0.2
4,572,013	+				-1.7
4,572,021	+				-1.4
4,572,021	-				-1.9
4,572,021	-				-1.2
4,572,023	+				+1.1
4,572,029	-				-0.5
4,572,031	+				-2.5
4,572,031	-				-2.0
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