Strain Fitness in Sphingobium sp. HT1-2 around GFF4464

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,458,094	+		GFF4462	0.39	+0.6
4,458,094	-		GFF4462	0.39	+1.5
4,458,099	-		GFF4462	0.42	-0.9
4,458,102	-		GFF4462	0.44	+0.2
4,458,104	+		GFF4462	0.45	+0.6
4,458,104	+		GFF4462	0.45	-1.5
4,458,114	-		GFF4462	0.52	+0.2
4,458,180	-				-0.4
4,458,338	+		GFF4463	0.20	-1.5
4,458,351	+		GFF4463	0.22	-0.1
4,458,354	-		GFF4463	0.22	-1.2
4,458,370	-		GFF4463	0.24	-1.2
4,458,380	+		GFF4463	0.25	+0.0
4,458,413	-		GFF4463	0.30	+1.0
4,458,419	-		GFF4463	0.31	-0.3
4,458,419	-		GFF4463	0.31	+0.9
4,458,445	+		GFF4463	0.34	+0.2
4,458,449	+		GFF4463	0.35	-1.0
4,458,449	+		GFF4463	0.35	-0.8
4,458,452	-		GFF4463	0.35	+0.4
4,458,462	-		GFF4463	0.36	+0.4
4,458,467	-		GFF4463	0.37	-0.7
4,458,488	+		GFF4463	0.40	-0.6
4,458,493	+		GFF4463	0.41	+0.8
4,458,493	+		GFF4463	0.41	+0.0
4,458,496	-		GFF4463	0.41	-0.3
4,458,498	+		GFF4463	0.41	-0.3
4,458,498	+		GFF4463	0.41	-2.1
4,458,501	-		GFF4463	0.42	-1.5
4,458,501	-		GFF4463	0.42	-0.4
4,458,501	-		GFF4463	0.42	+0.5
4,458,501	-		GFF4463	0.42	-1.1
4,458,506	-		GFF4463	0.42	-0.9
4,458,506	-		GFF4463	0.42	-1.0
4,458,506	-		GFF4463	0.42	+0.5
4,458,516	-		GFF4463	0.44	+0.8
4,458,532	-		GFF4463	0.46	-0.1
4,458,532	-		GFF4463	0.46	-0.7
4,458,537	+		GFF4463	0.46	-0.5
4,458,537	+		GFF4463	0.46	+0.3
4,458,537	+		GFF4463	0.46	-1.2
4,458,537	+		GFF4463	0.46	-0.5
4,458,537	+		GFF4463	0.46	-0.4
4,458,537	+		GFF4463	0.46	-1.4
4,458,537	+		GFF4463	0.46	-0.5
4,458,537	+		GFF4463	0.46	+0.0
4,458,545	-		GFF4463	0.48	-0.7
4,458,545	-		GFF4463	0.48	+0.9
4,458,545	-		GFF4463	0.48	+0.5
4,458,545	-		GFF4463	0.48	-1.6
4,458,545	-		GFF4463	0.48	-0.0
4,458,545	-		GFF4463	0.48	-0.8
4,458,545	-		GFF4463	0.48	+0.3
4,458,545	-		GFF4463	0.48	-1.3
4,458,599	-		GFF4463	0.55	+1.2
4,458,606	+		GFF4463	0.56	-0.6
4,458,618	+		GFF4463	0.57	+0.3
4,458,619	-		GFF4463	0.57	+1.3
4,458,620	-		GFF4463	0.58	+0.1
4,458,633	+		GFF4463	0.59	-0.9
4,458,661	+		GFF4463	0.63	+1.1
4,458,666	+		GFF4463	0.64	-0.9
4,458,669	-		GFF4463	0.64	+2.0
4,458,669	-		GFF4463	0.64	-2.5
4,458,679	+		GFF4463	0.65	-1.5
4,458,679	+		GFF4463	0.65	+0.5
4,458,694	-		GFF4463	0.67	-1.5
4,458,718	+		GFF4463	0.71	+0.3
4,458,736	+		GFF4463	0.73	-0.3
4,458,736	+		GFF4463	0.73	-0.4
4,458,736	+		GFF4463	0.73	+0.3
4,458,741	+		GFF4463	0.74	+0.7
4,458,744	-		GFF4463	0.74	+0.7
4,458,744	-		GFF4463	0.74	+0.9
4,458,745	-		GFF4463	0.74	-0.7
4,458,745	-		GFF4463	0.74	-1.3
4,458,749	+		GFF4463	0.75	+1.2
4,458,750	-		GFF4463	0.75	-2.0
4,458,756	-		GFF4463	0.76	+0.1
4,458,775	-		GFF4463	0.78	-0.1
4,458,777	+		GFF4463	0.79	-0.7
4,458,777	+		GFF4463	0.79	-1.7
4,458,780	-		GFF4463	0.79	+0.1
4,458,861	+		GFF4463	0.90	-0.5
4,458,869	-				-2.1
4,458,928	-				-2.0
4,458,931	+				-0.8
4,458,931	+				-0.2
4,458,939	-				-1.2
4,458,939	-				-0.8
4,458,940	+				-1.2
4,458,951	+				+0.7
4,458,952	+				-0.3
4,458,952	+				-0.8
4,458,952	+				-1.3
4,458,952	+				+0.7
4,458,960	-				-1.3
4,458,960	-				-0.9
4,458,960	-				-0.8
4,458,960	-				+1.3
4,458,990	-				-2.0
4,458,992	-				-0.2
4,458,997	-				-1.3
4,458,997	-				+0.5
4,459,007	-				+1.4
4,459,008	+				+1.5
4,459,008	+				+0.2
4,459,008	-				-1.1
4,459,035	-				-0.7
4,459,035	-				-1.0
4,459,036	+				-1.0
4,459,053	-				-0.3
4,459,055	+				-2.4
4,459,055	+				+1.0
4,459,055	+				-0.4
4,459,055	+				-2.0
4,459,055	+				-0.0
4,459,055	+				-2.3
4,459,063	-				-0.9
4,459,063	-				-1.2
4,459,063	-				-1.5
4,459,063	-				-0.2
4,459,063	-				+0.3
4,459,063	-				-0.9
4,459,078	-				-0.2
4,459,114	-				+0.7
4,459,133	-		GFF4464	0.11	-0.1
4,459,147	+		GFF4464	0.15	-0.8
4,459,155	-		GFF4464	0.16	+0.2
4,459,155	-		GFF4464	0.16	-0.4
4,459,162	+		GFF4464	0.18	-0.5
4,459,170	-		GFF4464	0.20	-0.7
4,459,216	+		GFF4464	0.30	-0.7
4,459,218	-		GFF4464	0.31	+1.6
4,459,222	+		GFF4464	0.32	-0.9
4,459,226	+		GFF4464	0.33	-1.0
4,459,226	+		GFF4464	0.33	-1.1
4,459,226	+		GFF4464	0.33	+1.3
4,459,230	+		GFF4464	0.34	-1.9
4,459,234	-		GFF4464	0.34	-1.1
4,459,234	-		GFF4464	0.34	-0.8
4,459,234	-		GFF4464	0.34	-1.1
4,459,238	+		GFF4464	0.35	+0.3
4,459,238	-		GFF4464	0.35	+1.3
4,459,239	-		GFF4464	0.36	+0.8
4,459,251	-		GFF4464	0.38	+0.7
4,459,253	+		GFF4464	0.39	-1.3
4,459,253	+		GFF4464	0.39	+0.5
4,459,261	-		GFF4464	0.41	-0.2
4,459,280	+		GFF4464	0.45	-0.1
4,459,280	+		GFF4464	0.45	-1.5
4,459,332	+		GFF4464	0.57	-0.1
4,459,358	+		GFF4464	0.63	+0.8
4,459,391	+		GFF4464	0.70	-0.7
4,459,397	-		GFF4464	0.72	-1.1
4,459,401	-		GFF4464	0.73	+0.8
4,459,413	-		GFF4464	0.75	-0.3
4,459,527	+				-0.7
4,459,535	-				+0.3
4,459,552	-				+0.3
4,459,552	-				+0.3
4,459,554	+				-2.4
4,459,554	+				+0.6
4,459,557	-				-0.3
4,459,570	+				+0.5
4,459,576	-				+0.7
4,459,648	-		GFF4465	0.25	-1.4
4,459,655	+		GFF4465	0.26	-0.3
4,459,657	+		GFF4465	0.27	-0.5
4,459,686	+		GFF4465	0.33	-1.4
4,459,694	-		GFF4465	0.35	-0.9
4,459,696	+		GFF4465	0.36	+0.7
4,459,701	+		GFF4465	0.37	-0.8
4,459,805	-		GFF4465	0.60	+0.9
4,459,807	+		GFF4465	0.61	-0.5
4,459,815	-		GFF4465	0.62	+0.0
4,459,836	+		GFF4465	0.67	-0.5
4,459,857	-		GFF4465	0.72	-0.4
4,459,887	+		GFF4465	0.79	-1.4
4,459,892	+		GFF4465	0.80	-1.3
4,459,896	+		GFF4465	0.81	-0.8
4,459,918	+		GFF4465	0.86	+1.2
4,459,918	+		GFF4465	0.86	+0.2
4,459,918	+		GFF4465	0.86	+0.8
4,459,918	+		GFF4465	0.86	+1.1
4,459,918	+		GFF4465	0.86	-1.5
4,459,918	+		GFF4465	0.86	-1.4
4,459,918	+		GFF4465	0.86	+1.2
4,459,926	-		GFF4465	0.87	+0.2
4,459,926	-		GFF4465	0.87	-1.1
4,459,926	-		GFF4465	0.87	-1.3
4,459,959	-				-0.4
4,459,974	-				-0.2
4,459,976	+				-0.5
4,459,976	+				+1.4
4,459,984	-				-1.2
4,460,010	+				+0.5
4,460,028	-				-0.7
4,460,034	+				-1.5
4,460,034	+				-0.8
4,460,036	-				-1.3
4,460,042	-		GFF4466	0.10	-0.6
4,460,051	+		GFF4466	0.11	-1.0
4,460,051	+		GFF4466	0.11	-0.6
4,460,059	-		GFF4466	0.13	+0.1
4,460,078	-		GFF4466	0.15	-1.3
4,460,078	-		GFF4466	0.15	-0.3
4,460,080	+		GFF4466	0.15	+0.3
4,460,100	+		GFF4466	0.18	+0.1
4,460,100	-		GFF4466	0.18	+0.7
4,460,107	+		GFF4466	0.19	+0.7
4,460,114	-		GFF4466	0.20	+0.8
4,460,116	+		GFF4466	0.20	-0.9
4,460,135	+		GFF4466	0.23	+0.3
4,460,143	-		GFF4466	0.24	-0.7
4,460,186	-		GFF4466	0.30	+0.5
4,460,209	+		GFF4466	0.33	+0.1
4,460,209	+		GFF4466	0.33	-0.2
4,460,209	+		GFF4466	0.33	-0.3
4,460,214	+		GFF4466	0.34	-0.4
4,460,217	-		GFF4466	0.34	+0.0
4,460,217	-		GFF4466	0.34	+0.6
4,460,217	-		GFF4466	0.34	-0.5
4,460,217	-		GFF4466	0.34	-0.8
4,460,217	-		GFF4466	0.34	-0.5
4,460,220	+		GFF4466	0.35	+0.8
4,460,222	-		GFF4466	0.35	+0.1
4,460,225	+		GFF4466	0.36	+0.3
4,460,276	+		GFF4466	0.43	+0.1
4,460,284	+		GFF4466	0.44	+1.2
4,460,290	-		GFF4466	0.45	-0.5
4,460,290	-		GFF4466	0.45	+0.6
4,460,337	+		GFF4466	0.51	+0.0
4,460,354	-		GFF4466	0.53	-0.2
4,460,370	+		GFF4466	0.56	+1.7
4,460,377	+		GFF4466	0.57	-1.7
4,460,393	+		GFF4466	0.59	+0.2
4,460,398	+		GFF4466	0.59	-1.5
4,460,398	+		GFF4466	0.59	+0.7
4,460,406	-		GFF4466	0.61	-0.3
4,460,408	-		GFF4466	0.61	-0.9
4,460,424	+		GFF4466	0.63	+0.2
4,460,424	+		GFF4466	0.63	+0.5
4,460,445	+		GFF4466	0.66	-1.6
4,460,451	+		GFF4466	0.67	-0.5
4,460,469	+		GFF4466	0.69	+0.7
4,460,477	-		GFF4466	0.70	-0.8
4,460,477	-		GFF4466	0.70	-0.9
4,460,477	-		GFF4466	0.70	+0.7
4,460,494	+		GFF4466	0.73	-0.3
4,460,502	-		GFF4466	0.74	+0.1
4,460,508	+		GFF4466	0.75	-0.9
4,460,512	-		GFF4466	0.75	-1.4
4,460,512	-		GFF4466	0.75	-1.4