Strain Fitness in Sphingobium sp. HT1-2 around GFF4436

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,429,693	+		GFF4435	0.35	-2.2
4,429,701	-		GFF4435	0.35	+0.9
4,429,701	-		GFF4435	0.35	+1.6
4,429,704	+		GFF4435	0.35	-0.1
4,429,704	+		GFF4435	0.35	-1.6
4,429,712	-		GFF4435	0.36	-1.1
4,429,719	-		GFF4435	0.36	-0.6
4,429,723	+		GFF4435	0.37	-1.0
4,429,723	+		GFF4435	0.37	-0.3
4,429,723	+		GFF4435	0.37	-0.8
4,429,728	+		GFF4435	0.37	-1.6
4,429,728	+		GFF4435	0.37	-0.8
4,429,728	+		GFF4435	0.37	-0.6
4,429,728	+		GFF4435	0.37	+0.3
4,429,728	+		GFF4435	0.37	-0.6
4,429,728	+		GFF4435	0.37	-1.3
4,429,728	+		GFF4435	0.37	-0.6
4,429,728	+		GFF4435	0.37	+0.1
4,429,728	+		GFF4435	0.37	-0.6
4,429,728	+		GFF4435	0.37	-1.4
4,429,728	+		GFF4435	0.37	+1.3
4,429,728	+		GFF4435	0.37	-0.7
4,429,728	+		GFF4435	0.37	-0.9
4,429,728	+		GFF4435	0.37	-1.3
4,429,731	-		GFF4435	0.37	+0.1
4,429,735	+		GFF4435	0.38	-2.1
4,429,735	+		GFF4435	0.38	-1.1
4,429,736	-		GFF4435	0.38	-1.2
4,429,736	-		GFF4435	0.38	-0.6
4,429,736	-		GFF4435	0.38	-1.3
4,429,736	-		GFF4435	0.38	-2.2
4,429,736	-		GFF4435	0.38	-0.0
4,429,736	-		GFF4435	0.38	-0.8
4,429,736	-		GFF4435	0.38	-0.1
4,429,736	-		GFF4435	0.38	-0.5
4,429,736	-		GFF4435	0.38	-0.9
4,429,736	-		GFF4435	0.38	-0.6
4,429,736	-		GFF4435	0.38	+0.4
4,429,736	-		GFF4435	0.38	+0.1
4,429,736	-		GFF4435	0.38	-0.2
4,429,736	-		GFF4435	0.38	+1.3
4,429,736	-		GFF4435	0.38	-0.4
4,429,736	-		GFF4435	0.38	-0.6
4,429,736	-		GFF4435	0.38	+0.6
4,429,736	-		GFF4435	0.38	-1.2
4,429,736	-		GFF4435	0.38	-1.5
4,429,740	+		GFF4435	0.38	-0.6
4,429,743	-		GFF4435	0.38	-0.4
4,429,743	-		GFF4435	0.38	-0.4
4,429,758	-		GFF4435	0.39	-1.0
4,429,765	+		GFF4435	0.40	-1.2
4,429,770	+		GFF4435	0.40	-0.2
4,429,773	-		GFF4435	0.40	+1.9
4,429,773	-		GFF4435	0.40	-1.0
4,429,794	+		GFF4435	0.42	-1.3
4,429,812	+		GFF4435	0.43	-0.8
4,429,827	+		GFF4435	0.44	-1.3
4,429,832	-		GFF4435	0.44	+0.4
4,429,853	-		GFF4435	0.46	-1.5
4,429,880	-		GFF4435	0.47	-1.7
4,429,887	-		GFF4435	0.48	-0.7
4,429,902	+		GFF4435	0.49	-0.7
4,429,914	+		GFF4435	0.50	-1.3
4,429,957	+		GFF4435	0.53	+0.2
4,429,965	-		GFF4435	0.53	-0.1
4,429,978	+		GFF4435	0.54	-0.5
4,429,994	+		GFF4435	0.55	-0.9
4,430,014	+		GFF4435	0.57	+0.6
4,430,040	+		GFF4435	0.58	-0.8
4,430,045	+		GFF4435	0.59	-0.4
4,430,045	+		GFF4435	0.59	+0.0
4,430,052	+		GFF4435	0.59	-1.2
4,430,053	-		GFF4435	0.59	-0.6
4,430,053	-		GFF4435	0.59	-0.0
4,430,060	-		GFF4435	0.60	-1.8
4,430,104	-		GFF4435	0.63	-1.7
4,430,108	+		GFF4435	0.63	-0.9
4,430,108	+		GFF4435	0.63	-0.9
4,430,116	+		GFF4435	0.64	-0.4
4,430,116	+		GFF4435	0.64	-2.8
4,430,116	+		GFF4435	0.64	-0.6
4,430,116	+		GFF4435	0.64	-1.5
4,430,116	-		GFF4435	0.64	-2.4
4,430,116	-		GFF4435	0.64	-0.6
4,430,124	-		GFF4435	0.64	-0.8
4,430,124	-		GFF4435	0.64	-0.8
4,430,147	+		GFF4435	0.66	-0.7
4,430,152	+		GFF4435	0.66	-1.3
4,430,155	-		GFF4435	0.66	-1.5
4,430,160	-		GFF4435	0.67	-0.7
4,430,160	-		GFF4435	0.67	-0.1
4,430,160	-		GFF4435	0.67	-1.0
4,430,168	+		GFF4435	0.67	-2.4
4,430,168	+		GFF4435	0.67	-1.2
4,430,168	+		GFF4435	0.67	-0.6
4,430,168	+		GFF4435	0.67	-1.9
4,430,168	+		GFF4435	0.67	+0.2
4,430,168	+		GFF4435	0.67	-1.6
4,430,168	+		GFF4435	0.67	-1.2
4,430,168	+		GFF4435	0.67	-0.0
4,430,176	-		GFF4435	0.68	-1.8
4,430,176	-		GFF4435	0.68	+0.5
4,430,176	-		GFF4435	0.68	+0.3
4,430,176	-		GFF4435	0.68	-1.0
4,430,176	-		GFF4435	0.68	+0.3
4,430,176	-		GFF4435	0.68	-0.3
4,430,178	+		GFF4435	0.68	-0.5
4,430,178	-		GFF4435	0.68	+0.6
4,430,188	+		GFF4435	0.69	+0.8
4,430,188	+		GFF4435	0.69	+0.8
4,430,224	-		GFF4435	0.71	+0.3
4,430,246	+		GFF4435	0.73	-0.8
4,430,252	+		GFF4435	0.73	-0.7
4,430,255	+		GFF4435	0.73	-1.4
4,430,263	-		GFF4435	0.74	-0.6
4,430,265	+		GFF4435	0.74	+0.1
4,430,265	+		GFF4435	0.74	-0.5
4,430,265	+		GFF4435	0.74	+0.1
4,430,270	+		GFF4435	0.74	+0.6
4,430,272	-		GFF4435	0.74	+0.3
4,430,273	-		GFF4435	0.75	-0.7
4,430,278	-		GFF4435	0.75	-0.6
4,430,288	+		GFF4435	0.76	-1.4
4,430,288	+		GFF4435	0.76	-1.1
4,430,319	+		GFF4435	0.78	-1.2
4,430,322	+		GFF4435	0.78	-1.3
4,430,338	-		GFF4435	0.79	-1.3
4,430,360	-		GFF4435	0.80	-0.3
4,430,417	-		GFF4435	0.84	-1.1
4,430,426	-		GFF4435	0.85	-0.4
4,430,436	-		GFF4435	0.86	-0.9
4,430,436	-		GFF4435	0.86	-0.5
4,430,439	+		GFF4435	0.86	-0.8
4,430,439	+		GFF4435	0.86	-0.9
4,430,444	+		GFF4435	0.86	-0.9
4,430,447	-		GFF4435	0.86	-0.0
4,430,493	+		GFF4435	0.90	+0.6
4,430,495	-		GFF4435	0.90	-1.7
4,430,502	+				-0.0
4,430,505	+				-3.0
4,430,505	+				-0.2
4,430,510	+				+0.8
4,430,512	-				-0.6
4,430,515	+				-0.6
4,430,523	-				+0.8
4,430,525	+				-2.4
4,430,536	+				-0.6
4,430,536	+				+0.2
4,430,542	-				-0.0
4,430,542	-				-0.8
4,430,544	-				-0.1
4,430,544	-				-0.6
4,430,544	-				-1.4
4,430,555	+				-2.6
4,430,555	+				-2.2
4,430,581	-				+0.4
4,430,582	+				+1.9
4,430,583	+				+0.7
4,430,589	-				-1.1
4,430,602	-				-0.5
4,430,612	+				-1.0
4,430,678	+				-1.1
4,430,678	+				-0.6
4,430,678	+				+0.4
4,430,678	+				-0.7
4,430,678	+				-1.0
4,430,686	-				-1.6
4,430,686	-				-1.1
4,430,686	-				-0.3
4,430,686	-				+1.0
4,430,686	-				-0.6
4,430,686	-				-0.6
4,430,697	+				-1.3
4,430,697	-				-0.9
4,430,699	+				-1.8
4,430,699	+				-0.7
4,430,707	-				-0.2
4,430,707	-				+0.3
4,430,707	-				-0.2
4,430,707	-				-1.9
4,430,707	-				-1.1
4,430,717	-				-0.5
4,430,723	+				+0.4
4,430,730	+				-0.3
4,430,730	+				-0.2
4,430,731	-				-1.5
4,430,741	-				-1.6
4,430,757	-				-0.7
4,430,787	+				+0.9
4,430,795	-				-1.7
4,430,806	-		GFF4436	0.10	+0.1
4,430,820	+		GFF4436	0.12	-1.0
4,430,820	+		GFF4436	0.12	-1.8
4,430,820	+		GFF4436	0.12	-0.6
4,430,830	+		GFF4436	0.12	-0.0
4,430,830	-		GFF4436	0.12	-0.6
4,430,830	-		GFF4436	0.12	-2.8
4,430,853	+		GFF4436	0.15	-0.2
4,430,853	+		GFF4436	0.15	-1.0
4,430,853	+		GFF4436	0.15	-1.2
4,430,853	+		GFF4436	0.15	-1.2
4,430,854	-		GFF4436	0.15	+1.1
4,430,861	-		GFF4436	0.15	-1.4
4,430,908	-		GFF4436	0.20	-3.2
4,430,917	-		GFF4436	0.20	+0.2
4,430,930	-		GFF4436	0.22	+0.1
4,430,932	+		GFF4436	0.22	-0.2
4,430,935	+		GFF4436	0.22	-1.2
4,430,961	+		GFF4436	0.24	+0.4
4,431,028	-		GFF4436	0.30	-0.1
4,431,047	+		GFF4436	0.32	-0.6
4,431,080	+		GFF4436	0.35	-0.2
4,431,090	+		GFF4436	0.36	-1.3
4,431,090	+		GFF4436	0.36	-2.0
4,431,095	+		GFF4436	0.37	-0.6
4,431,095	+		GFF4436	0.37	-1.7
4,431,095	+		GFF4436	0.37	+0.4
4,431,095	+		GFF4436	0.37	-1.0
4,431,095	+		GFF4436	0.37	-0.8
4,431,098	-		GFF4436	0.37	-1.1
4,431,098	-		GFF4436	0.37	+0.1
4,431,098	-		GFF4436	0.37	+2.0
4,431,103	-		GFF4436	0.37	-0.6
4,431,103	-		GFF4436	0.37	-0.5
4,431,134	+		GFF4436	0.40	-2.4
4,431,164	+		GFF4436	0.43	-0.8
4,431,164	+		GFF4436	0.43	-0.7
4,431,169	+		GFF4436	0.43	+0.3
4,431,172	-		GFF4436	0.43	+0.2
4,431,172	-		GFF4436	0.43	-1.7
4,431,172	-		GFF4436	0.43	-1.0
4,431,172	-		GFF4436	0.43	-1.1
4,431,172	-		GFF4436	0.43	+0.5
4,431,174	+		GFF4436	0.44	-0.7
4,431,177	-		GFF4436	0.44	-0.4
4,431,177	-		GFF4436	0.44	-1.2
4,431,177	-		GFF4436	0.44	-0.4
4,431,177	-		GFF4436	0.44	-0.7
4,431,182	-		GFF4436	0.44	+0.5
4,431,183	-		GFF4436	0.44	-0.8
4,431,233	+		GFF4436	0.49	-0.2
4,431,233	+		GFF4436	0.49	-0.7
4,431,233	+		GFF4436	0.49	-1.6
4,431,233	+		GFF4436	0.49	-0.0
4,431,233	+		GFF4436	0.49	-1.8
4,431,233	+		GFF4436	0.49	-1.5
4,431,238	+		GFF4436	0.49	-1.1
4,431,238	+		GFF4436	0.49	+0.5
4,431,238	+		GFF4436	0.49	+0.7
4,431,238	+		GFF4436	0.49	-1.4
4,431,238	+		GFF4436	0.49	-2.4
4,431,238	+		GFF4436	0.49	-1.4
4,431,238	+		GFF4436	0.49	+0.1
4,431,238	+		GFF4436	0.49	-1.4
4,431,238	+		GFF4436	0.49	+1.4
4,431,241	-		GFF4436	0.50	-0.1
4,431,245	+		GFF4436	0.50	-1.0
4,431,245	+		GFF4436	0.50	-1.1
4,431,246	-		GFF4436	0.50	-2.0
4,431,246	-		GFF4436	0.50	+1.0
4,431,246	-		GFF4436	0.50	-0.6
4,431,246	-		GFF4436	0.50	-0.4
4,431,246	-		GFF4436	0.50	-1.6
4,431,246	-		GFF4436	0.50	+0.1
4,431,246	-		GFF4436	0.50	+0.2
4,431,246	-		GFF4436	0.50	-1.1
4,431,285	+		GFF4436	0.54	-0.6
4,431,285	+		GFF4436	0.54	-1.0
4,431,285	+		GFF4436	0.54	-1.1
4,431,285	+		GFF4436	0.54	-0.7
4,431,285	+		GFF4436	0.54	-0.9
4,431,293	-		GFF4436	0.54	-0.6
4,431,293	-		GFF4436	0.54	-0.7
4,431,293	-		GFF4436	0.54	-0.2
4,431,293	-		GFF4436	0.54	-0.3
4,431,293	-		GFF4436	0.54	-0.2
4,431,293	-		GFF4436	0.54	-0.8
4,431,293	-		GFF4436	0.54	-1.6
4,431,303	+		GFF4436	0.55	-2.0
4,431,303	+		GFF4436	0.55	-0.8
4,431,303	+		GFF4436	0.55	-1.1
4,431,311	-		GFF4436	0.56	+0.8
4,431,311	-		GFF4436	0.56	-1.0
4,431,311	-		GFF4436	0.56	+0.7
4,431,311	-		GFF4436	0.56	-0.8
4,431,318	+		GFF4436	0.57	+0.1
4,431,337	+		GFF4436	0.58	-0.9
4,431,337	+		GFF4436	0.58	-0.8
4,431,345	-		GFF4436	0.59	-1.1
4,431,345	-		GFF4436	0.59	-3.0
4,431,345	-		GFF4436	0.59	-1.0
4,431,367	+		GFF4436	0.61	-0.1
4,431,368	-		GFF4436	0.61	-0.6
4,431,384	+		GFF4436	0.63	-1.2
4,431,419	-		GFF4436	0.66	-0.7
4,431,425	+		GFF4436	0.66	-1.4
4,431,425	-		GFF4436	0.66	+1.4
4,431,435	+		GFF4436	0.67	-0.4
4,431,435	+		GFF4436	0.67	-0.8
4,431,435	+		GFF4436	0.67	-1.2
4,431,435	+		GFF4436	0.67	+1.0
4,431,435	+		GFF4436	0.67	-0.4
4,431,435	+		GFF4436	0.67	+0.2
4,431,441	+		GFF4436	0.68	-1.1
4,431,443	-		GFF4436	0.68	-0.1
4,431,443	-		GFF4436	0.68	-1.3
4,431,453	+		GFF4436	0.69	+0.7
4,431,463	+		GFF4436	0.70	+0.7
4,431,469	+		GFF4436	0.70	-1.1
4,431,471	-		GFF4436	0.71	-0.6
4,431,477	-		GFF4436	0.71	-0.7
4,431,484	+		GFF4436	0.72	-0.3
4,431,492	-		GFF4436	0.72	-0.3
4,431,494	+		GFF4436	0.73	-0.9
4,431,499	+		GFF4436	0.73	-0.1
4,431,507	-		GFF4436	0.74	-1.1
4,431,539	+		GFF4436	0.77	-1.2
4,431,539	+		GFF4436	0.77	-2.5
4,431,539	+		GFF4436	0.77	-1.4
4,431,539	+		GFF4436	0.77	-0.8
4,431,545	-		GFF4436	0.77	-0.7
4,431,547	-		GFF4436	0.77	+0.2
4,431,547	-		GFF4436	0.77	+0.1
4,431,547	-		GFF4436	0.77	-0.5
4,431,565	+		GFF4436	0.79	+0.0
4,431,567	-		GFF4436	0.79	+0.4
4,431,567	-		GFF4436	0.79	+0.1
4,431,567	-		GFF4436	0.79	-1.5
4,431,593	-		GFF4436	0.82	-0.6
4,431,643	+		GFF4436	0.86	-1.2
4,431,650	-		GFF4436	0.87	-1.4
4,431,650	-		GFF4436	0.87	-0.8
4,431,672	+		GFF4436	0.89	-0.8
4,431,688	+				-1.8
4,431,689	+				-1.6
4,431,689	+				-0.5
4,431,689	+				-1.0
4,431,689	+				-0.7
4,431,689	+				-1.8
4,431,697	-				+0.2
4,431,697	-				-1.4
4,431,697	-				-0.1
4,431,697	-				-0.4
4,431,697	-				-0.1
4,431,697	-				-1.0
4,431,706	+				+0.4
4,431,706	+				+0.6
4,431,709	-				-1.6
4,431,714	-				-0.6
4,431,714	-				-1.6
4,431,714	-				+0.0
4,431,714	-				-0.3
4,431,720	-				-0.0
4,431,727	-				+0.1
4,431,746	+				-0.2
4,431,746	+				+1.0
4,431,754	-				+0.1
4,431,796	+				+0.6
4,431,796	+				-0.6
4,431,796	+				-0.6
4,431,796	+				-0.2
4,431,796	+				+1.1
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