Strain Fitness in Sphingobium sp. HT1-2 around GFF4312

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,319,411	+				+0.3
4,319,411	+				-0.2
4,319,411	+				-0.3
4,319,411	+				-0.8
4,319,416	+				+0.8
4,319,416	+				+0.1
4,319,424	-				-0.4
4,319,424	-				-2.9
4,319,424	-				-0.1
4,319,424	-				-1.0
4,319,427	-				-1.0
4,319,429	+				-1.1
4,319,447	+				-1.4
4,319,486	+				-0.1
4,319,493	+				+0.8
4,319,501	-				+0.5
4,319,510	-				-1.5
4,319,525	-				-1.4
4,319,538	-				-1.6
4,319,539	+				+0.5
4,319,539	+				-0.8
4,319,539	+				-0.7
4,319,539	+				-2.2
4,319,539	+				-2.3
4,319,539	+				-1.7
4,319,539	+				-0.8
4,319,539	+				-0.6
4,319,539	+				-0.7
4,319,539	+				+0.2
4,319,539	+				-1.2
4,319,539	+				+0.5
4,319,539	+				-1.1
4,319,539	+				-0.9
4,319,539	+				-0.9
4,319,547	-				-0.7
4,319,547	-				+0.1
4,319,547	-				-0.6
4,319,547	-				-1.2
4,319,547	-				-2.2
4,319,547	-				-1.4
4,319,547	-				-1.5
4,319,547	-				-0.4
4,319,547	-				-0.5
4,319,547	-				-2.1
4,319,547	-				-0.8
4,319,547	-				-0.5
4,319,549	+				-1.5
4,319,549	+				-0.9
4,319,549	+				-1.7
4,319,549	+				-1.2
4,319,549	+				-0.8
4,319,557	-				+0.4
4,319,557	-				-0.3
4,319,557	-				+0.2
4,319,557	-				+0.1
4,319,557	-				+0.5
4,319,563	+				+0.5
4,319,568	+				-0.6
4,319,601	-				+0.3
4,319,608	+				+0.2
4,319,608	+				-1.4
4,319,608	+				+0.7
4,319,608	+				+1.3
4,319,608	+				-0.9
4,319,608	+				-0.0
4,319,608	+				+0.3
4,319,608	+				-1.7
4,319,616	-				-2.3
4,319,616	-				-1.2
4,319,616	-				-0.7
4,319,616	-				+0.9
4,319,616	-				-0.5
4,319,621	-				-1.5
4,319,631	+				-1.0
4,319,639	-				-1.0
4,319,639	-				+1.1
4,319,661	-				-0.6
4,319,683	+				-1.2
4,319,683	+				-1.1
4,319,690	+				+0.4
4,319,690	-				-0.9
4,319,708	-		GFF4311	0.12	+0.3
4,319,713	-		GFF4311	0.13	-0.4
4,319,719	+		GFF4311	0.14	-1.5
4,319,719	-		GFF4311	0.14	-1.7
4,319,725	-		GFF4311	0.14	+0.5
4,319,727	-		GFF4311	0.15	-1.3
4,319,744	+		GFF4311	0.17	-0.8
4,319,752	-		GFF4311	0.18	-0.4
4,319,764	+		GFF4311	0.19	-1.5
4,319,780	+		GFF4311	0.21	+0.0
4,319,785	+		GFF4311	0.22	-0.5
4,319,803	-		GFF4311	0.24	-0.4
4,319,811	+		GFF4311	0.25	-0.7
4,319,812	+		GFF4311	0.25	+0.0
4,319,826	-		GFF4311	0.27	+0.9
4,319,826	-		GFF4311	0.27	-0.2
4,319,836	+		GFF4311	0.28	-1.5
4,319,836	+		GFF4311	0.28	-1.3
4,319,844	-		GFF4311	0.29	-1.4
4,319,859	+		GFF4311	0.31	-0.5
4,319,859	+		GFF4311	0.31	-0.5
4,319,861	-		GFF4311	0.31	-1.5
4,319,867	-		GFF4311	0.32	+0.8
4,319,870	+		GFF4311	0.32	-0.7
4,319,904	-		GFF4311	0.37	-1.2
4,319,926	+		GFF4311	0.39	-0.6
4,319,934	-		GFF4311	0.40	+0.3
4,319,941	-		GFF4311	0.41	-1.7
4,319,951	+		GFF4311	0.42	-1.4
4,319,951	+		GFF4311	0.42	+0.3
4,319,951	+		GFF4311	0.42	-0.8
4,319,951	+		GFF4311	0.42	-0.0
4,319,951	+		GFF4311	0.42	-1.5
4,319,951	+		GFF4311	0.42	-1.2
4,319,951	+		GFF4311	0.42	+0.4
4,319,951	+		GFF4311	0.42	-1.3
4,319,951	+		GFF4311	0.42	-1.3
4,319,951	+		GFF4311	0.42	-1.5
4,319,951	+		GFF4311	0.42	-1.7
4,319,951	+		GFF4311	0.42	-1.0
4,319,951	+		GFF4311	0.42	+1.1
4,319,951	+		GFF4311	0.42	-0.5
4,319,951	+		GFF4311	0.42	-0.6
4,319,951	+		GFF4311	0.42	+0.0
4,319,951	+		GFF4311	0.42	-0.7
4,319,951	+		GFF4311	0.42	-0.6
4,319,951	+		GFF4311	0.42	-0.5
4,319,951	+		GFF4311	0.42	-0.9
4,319,951	+		GFF4311	0.42	+0.3
4,319,951	+		GFF4311	0.42	-0.4
4,319,951	+		GFF4311	0.42	-0.5
4,319,951	+		GFF4311	0.42	-1.0
4,319,951	+		GFF4311	0.42	-0.4
4,319,951	+		GFF4311	0.42	+0.4
4,319,951	+		GFF4311	0.42	-0.9
4,319,951	+		GFF4311	0.42	-0.4
4,319,956	+		GFF4311	0.43	-1.3
4,319,958	+		GFF4311	0.43	-0.3
4,319,959	-		GFF4311	0.43	+0.4
4,319,959	-		GFF4311	0.43	+0.3
4,319,959	-		GFF4311	0.43	+0.2
4,319,959	-		GFF4311	0.43	-0.5
4,319,959	-		GFF4311	0.43	-1.3
4,319,959	-		GFF4311	0.43	-0.8
4,319,959	-		GFF4311	0.43	-1.3
4,319,959	-		GFF4311	0.43	-0.9
4,319,959	-		GFF4311	0.43	+0.5
4,319,959	-		GFF4311	0.43	-1.2
4,319,959	-		GFF4311	0.43	-0.3
4,319,959	-		GFF4311	0.43	-0.8
4,319,959	-		GFF4311	0.43	+0.9
4,319,959	-		GFF4311	0.43	-0.9
4,319,959	-		GFF4311	0.43	-0.5
4,319,959	-		GFF4311	0.43	-0.8
4,319,959	-		GFF4311	0.43	-1.4
4,319,959	-		GFF4311	0.43	+0.1
4,319,959	-		GFF4311	0.43	+0.4
4,319,959	-		GFF4311	0.43	+0.2
4,319,959	-		GFF4311	0.43	-1.4
4,319,959	-		GFF4311	0.43	-0.8
4,319,959	-		GFF4311	0.43	-0.7
4,319,959	-		GFF4311	0.43	-1.1
4,319,959	-		GFF4311	0.43	+0.4
4,319,959	-		GFF4311	0.43	-1.3
4,319,959	-		GFF4311	0.43	+0.1
4,319,981	+		GFF4311	0.46	-1.1
4,320,003	+		GFF4311	0.49	-0.3
4,320,006	+		GFF4311	0.49	-0.7
4,320,008	+		GFF4311	0.50	-0.6
4,320,012	-		GFF4311	0.50	+0.2
4,320,018	+		GFF4311	0.51	-0.6
4,320,020	+		GFF4311	0.51	-0.1
4,320,020	+		GFF4311	0.51	+0.4
4,320,026	-		GFF4311	0.52	-0.5
4,320,032	+		GFF4311	0.52	-1.7
4,320,032	+		GFF4311	0.52	+0.0
4,320,032	+		GFF4311	0.52	-0.9
4,320,042	+		GFF4311	0.54	-0.3
4,320,066	+		GFF4311	0.57	-2.2
4,320,066	+		GFF4311	0.57	+0.6
4,320,066	+		GFF4311	0.57	+1.0
4,320,066	+		GFF4311	0.57	-0.8
4,320,066	+		GFF4311	0.57	-1.1
4,320,068	+		GFF4311	0.57	-0.2
4,320,074	-		GFF4311	0.58	-0.5
4,320,074	-		GFF4311	0.58	-0.5
4,320,074	-		GFF4311	0.58	-0.5
4,320,085	+		GFF4311	0.59	-1.0
4,320,098	+		GFF4311	0.61	-0.9
4,320,106	-		GFF4311	0.62	-0.6
4,320,107	-		GFF4311	0.62	-1.3
4,320,110	+		GFF4311	0.62	+0.1
4,320,112	+		GFF4311	0.62	-1.0
4,320,120	-		GFF4311	0.63	-1.2
4,320,126	-		GFF4311	0.64	-1.3
4,320,130	+		GFF4311	0.65	+0.5
4,320,138	-		GFF4311	0.66	+0.1
4,320,141	+		GFF4311	0.66	-0.9
4,320,156	+		GFF4311	0.68	-1.9
4,320,161	+		GFF4311	0.69	+1.0
4,320,164	-		GFF4311	0.69	-1.4
4,320,171	+		GFF4311	0.70	+0.0
4,320,171	-		GFF4311	0.70	-2.6
4,320,224	-		GFF4311	0.76	-2.7
4,320,230	+		GFF4311	0.77	-0.9
4,320,235	+		GFF4311	0.78	-0.4
4,320,237	-		GFF4311	0.78	-0.6
4,320,243	-		GFF4311	0.79	-1.3
4,320,260	+		GFF4311	0.81	+0.8
4,320,268	-		GFF4311	0.82	-0.8
4,320,271	+		GFF4311	0.82	+0.4
4,320,292	+		GFF4311	0.85	-1.2
4,320,292	+		GFF4311	0.85	-0.2
4,320,292	+		GFF4311	0.85	+0.3
4,320,292	+		GFF4311	0.85	-0.3
4,320,292	+		GFF4311	0.85	+1.3
4,320,292	+		GFF4311	0.85	-0.2
4,320,292	+		GFF4311	0.85	+0.2
4,320,300	-		GFF4311	0.86	-0.9
4,320,300	-		GFF4311	0.86	+0.5
4,320,300	-		GFF4311	0.86	-0.5
4,320,300	-		GFF4311	0.86	-1.0
4,320,300	-		GFF4311	0.86	-2.5
4,320,311	+		GFF4311	0.87	-0.6
4,320,382	-				-1.0
4,320,384	+				-1.4
4,320,384	+				+0.2
4,320,408	+				-0.7
4,320,408	+				-1.5
4,320,408	+				-2.0
4,320,408	+				-0.9
4,320,408	+				+0.2
4,320,408	+				-0.6
4,320,408	+				-0.7
4,320,408	+				-0.7
4,320,408	+				-1.9
4,320,408	+				-0.3
4,320,408	+				+0.9
4,320,408	+				-1.2
4,320,408	+				-0.4
4,320,408	+				-0.2
4,320,415	+				-0.5
4,320,415	+				+0.3
4,320,416	-				-0.0
4,320,416	-				-0.1
4,320,416	-				-0.3
4,320,416	-				-1.3
4,320,416	-				-0.7
4,320,416	-				-2.2
4,320,416	-				-1.6
4,320,416	-				-0.6
4,320,416	-				+0.2
4,320,416	-				+0.5
4,320,416	-				-2.3
4,320,416	-				-0.6
4,320,416	-				-1.8
4,320,416	-				-0.8
4,320,416	-				-0.6
4,320,416	-				-0.8
4,320,416	-				-2.3
4,320,416	-				+0.1
4,320,416	-				-1.4
4,320,423	+				-1.8
4,320,423	+				+0.2
4,320,423	+				+0.2
4,320,423	+				-1.2
4,320,423	+				-0.7
4,320,423	+				-0.7
4,320,423	+				+0.5
4,320,423	+				-0.0
4,320,423	+				-1.6
4,320,423	+				-0.2
4,320,423	+				-0.6
4,320,423	+				+0.8
4,320,423	+				-0.5
4,320,423	+				+0.3
4,320,423	+				-0.7
4,320,423	-				-0.6
4,320,423	-				-0.5
4,320,431	-				-1.4
4,320,431	-				+0.2
4,320,431	-				-1.0
4,320,431	-				-0.7
4,320,431	-				-1.3
4,320,431	-				-1.8
4,320,431	-				-1.2
4,320,431	-				-2.4
4,320,431	-				-1.6
4,320,431	-				-0.9
4,320,431	-				-0.8
4,320,431	-				+0.1
4,320,431	-				-1.7
4,320,431	-				-0.5
4,320,431	-				+0.9
4,320,431	-				-1.8
4,320,431	-				+0.3
4,320,431	-				-1.1
4,320,431	-				-0.5
4,320,453	+				-0.6
4,320,455	-				-0.1
4,320,458	+				-0.0
4,320,461	-				-0.7
4,320,470	-				-0.4
4,320,483	+				-0.2
4,320,496	-		GFF4312	0.11	-1.1
4,320,505	+		GFF4312	0.12	-1.7
4,320,506	-		GFF4312	0.12	-0.3
4,320,506	-		GFF4312	0.12	+0.1
4,320,514	-		GFF4312	0.13	-1.4
4,320,532	-		GFF4312	0.15	-0.3
4,320,539	-		GFF4312	0.16	-1.6
4,320,555	+		GFF4312	0.18	+1.0
4,320,555	+		GFF4312	0.18	-1.8
4,320,563	-		GFF4312	0.19	-0.1
4,320,573	-		GFF4312	0.20	-0.1
4,320,584	+		GFF4312	0.21	-0.7
4,320,591	-		GFF4312	0.22	-0.6
4,320,592	-		GFF4312	0.22	-0.7
4,320,600	-		GFF4312	0.23	-0.0
4,320,615	+		GFF4312	0.25	-1.4
4,320,615	+		GFF4312	0.25	+0.3
4,320,615	+		GFF4312	0.25	-1.2
4,320,623	-		GFF4312	0.26	-1.6
4,320,665	-		GFF4312	0.31	-0.9
4,320,669	+		GFF4312	0.32	+1.8
4,320,715	+		GFF4312	0.38	-0.7
4,320,732	-		GFF4312	0.40	-0.5
4,320,759	+		GFF4312	0.43	-0.5
4,320,763	+		GFF4312	0.43	+0.3
4,320,765	+		GFF4312	0.44	-2.4
4,320,773	-		GFF4312	0.45	+0.4
4,320,774	+		GFF4312	0.45	-0.3
4,320,774	+		GFF4312	0.45	-0.9
4,320,780	+		GFF4312	0.46	-0.8
4,320,780	+		GFF4312	0.46	-1.3
4,320,780	+		GFF4312	0.46	+0.5
4,320,782	+		GFF4312	0.46	-1.2
4,320,803	-		GFF4312	0.48	-1.9
4,320,816	-		GFF4312	0.50	-1.3
4,320,817	+		GFF4312	0.50	-1.4
4,320,817	+		GFF4312	0.50	+0.8
4,320,817	+		GFF4312	0.50	-0.4
4,320,825	-		GFF4312	0.51	-1.9
4,320,842	-		GFF4312	0.53	+0.9
4,320,861	+		GFF4312	0.55	-1.3
4,320,861	-		GFF4312	0.55	-1.2
4,320,861	-		GFF4312	0.55	-0.5
4,320,869	-		GFF4312	0.56	-1.7
4,320,879	+		GFF4312	0.58	+0.2
4,320,879	-		GFF4312	0.58	+1.2
4,320,887	-		GFF4312	0.59	-1.5
4,320,888	-		GFF4312	0.59	-1.1
4,320,931	+		GFF4312	0.64	-1.7
4,320,931	+		GFF4312	0.64	-1.7
4,320,931	-		GFF4312	0.64	+0.5
4,320,939	-		GFF4312	0.65	-1.9
4,320,939	-		GFF4312	0.65	+0.5
4,320,951	-		GFF4312	0.67	-0.8
4,320,963	+		GFF4312	0.68	-0.8
4,320,968	-		GFF4312	0.69	+1.3
4,320,994	-		GFF4312	0.72	-0.5
4,320,994	-		GFF4312	0.72	+0.1
4,320,995	-		GFF4312	0.72	-0.5
4,321,009	-		GFF4312	0.74	-0.7
4,321,020	+		GFF4312	0.75	+0.3
4,321,029	+		GFF4312	0.76	-0.0
4,321,034	+		GFF4312	0.77	-0.1
4,321,037	-		GFF4312	0.77	-0.3
4,321,057	-		GFF4312	0.80	+0.1
4,321,061	+		GFF4312	0.80	-0.5
4,321,065	-		GFF4312	0.81	+0.1
4,321,068	+		GFF4312	0.81	-1.7
4,321,068	+		GFF4312	0.81	-0.4
4,321,068	+		GFF4312	0.81	+0.1
4,321,068	+		GFF4312	0.81	-2.1
4,321,068	+		GFF4312	0.81	-2.0
4,321,076	-		GFF4312	0.82	+0.6
4,321,076	-		GFF4312	0.82	-0.9
4,321,104	+		GFF4312	0.85	+0.6
4,321,112	-		GFF4312	0.86	-1.4
4,321,131	+		GFF4312	0.89	-1.2
4,321,138	+		GFF4312	0.90	-1.4
4,321,139	-		GFF4312	0.90	-0.6
4,321,139	-		GFF4312	0.90	-1.4
4,321,139	-		GFF4312	0.90	-0.1
4,321,146	-				-0.5
4,321,146	-				-1.4
4,321,205	-				+0.2
4,321,211	+				-1.4
4,321,226	-				-0.6
4,321,246	-				-1.6
4,321,246	-				-1.5
4,321,250	+				-1.6
4,321,258	-				-0.6
4,321,258	-				+0.5
4,321,274	-				-2.4
4,321,274	-				+0.0
4,321,296	-				-1.3
4,321,373	+				+0.2
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4,321,385	+		GFF4313	0.10	-0.7
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4,321,389	+		GFF4313	0.11	-2.0
4,321,389	+		GFF4313	0.11	-1.4
4,321,389	+		GFF4313	0.11	-0.8
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4,321,529	+		GFF4313	0.21	-1.9
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4,321,555	+		GFF4313	0.23	-1.0
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4,321,601	+		GFF4313	0.27	-1.0
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4,321,667	+		GFF4313	0.32	-1.7
4,321,670	-		GFF4313	0.32	-0.3
4,321,670	-		GFF4313	0.32	-1.2
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4,321,680	-		GFF4313	0.33	-0.5
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4,321,736	-		GFF4313	0.37	-0.5
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4,321,748	+		GFF4313	0.38	-2.2
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4,321,748	+		GFF4313	0.38	-1.5
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4,321,756	-		GFF4313	0.39	-1.1
4,321,756	-		GFF4313	0.39	-2.9
4,321,756	-		GFF4313	0.39	-0.4
4,321,756	-		GFF4313	0.39	+0.5
4,321,756	-		GFF4313	0.39	-1.3
4,321,763	+		GFF4313	0.39	-1.8
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4,321,773	+		GFF4313	0.40	-0.4
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4,321,773	+		GFF4313	0.40	-1.0
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4,321,818	+		GFF4313	0.43	-1.2
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4,321,828	-		GFF4313	0.44	+0.0
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4,321,845	+		GFF4313	0.45	-0.8
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4,321,845	+		GFF4313	0.45	-1.0
4,321,845	+		GFF4313	0.45	-1.7
4,321,846	+		GFF4313	0.45	-0.4
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4,321,853	-		GFF4313	0.46	-0.9
4,321,853	-		GFF4313	0.46	-0.5
4,321,853	-		GFF4313	0.46	-2.6
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4,321,909	-		GFF4313	0.50	-1.1
4,321,911	+		GFF4313	0.50	-0.7
4,321,924	+		GFF4313	0.51	-1.2
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4,321,932	-		GFF4313	0.52	-0.6
4,321,937	+		GFF4313	0.52	-0.7
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4,321,960	+		GFF4313	0.54	-0.9
4,321,962	-		GFF4313	0.54	-1.3
4,321,976	+		GFF4313	0.55	-1.1
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4,321,995	+		GFF4313	0.57	-1.4
4,322,002	+		GFF4313	0.57	-0.4
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4,322,002	+		GFF4313	0.57	-0.6
4,322,002	+		GFF4313	0.57	+1.1
4,322,002	+		GFF4313	0.57	-0.9
4,322,002	+		GFF4313	0.57	-0.8
4,322,005	-		GFF4313	0.57	-1.1
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4,322,010	-		GFF4313	0.58	-0.7
4,322,010	-		GFF4313	0.58	-1.0
4,322,010	-		GFF4313	0.58	-0.8
4,322,010	-		GFF4313	0.58	-1.0
4,322,010	-		GFF4313	0.58	+1.0
4,322,010	-		GFF4313	0.58	-2.2
4,322,010	-		GFF4313	0.58	+1.5
4,322,012	+		GFF4313	0.58	-0.5
4,322,039	+		GFF4313	0.60	-0.6
4,322,044	+		GFF4313	0.60	-0.7
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4,322,047	-		GFF4313	0.61	+0.3
4,322,047	-		GFF4313	0.61	-0.8
4,322,055	+		GFF4313	0.61	-1.2
4,322,057	+		GFF4313	0.61	-1.3
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4,322,091	+		GFF4313	0.64	-0.7
4,322,101	+		GFF4313	0.65	-3.3
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4,322,137	+		GFF4313	0.67	+0.3
4,322,137	+		GFF4313	0.67	+1.1
4,322,137	+		GFF4313	0.67	+0.5
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4,322,185	-		GFF4313	0.71	-1.7
4,322,186	+		GFF4313	0.71	-1.6
4,322,187	-		GFF4313	0.71	-0.2
4,322,213	+		GFF4313	0.73	+0.3